BAC Information

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BAC

Clone NameB6Ng01-029M19
Chromosome9 (Build37)
Map Location 111,812,134 - 111,812,751
singlet/doubletsinglet
Overlap genenone
Upstream geneGm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M19.bB6Ng01-029M19.g
ACCDH859894DH859895
length1,190903
definitionDH859894|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M19, 5' end.DH859895|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagagtgctcagtacccctgttgtcaaactacaagcctcttat
aagatatgtttttcttatgccctatcccaaccacatcacataattaaaaa
tggaagttgtagggtctcaggagatggcttagctgtgaaagcacttgcct
ggcaaacttgacagcccaagttcaccctgtaaccagcatagagcttgatg
ctcatccagagcataacagagaaaggatggtgctcacctgagctcccaac
actcctgctaccgtgtgggaggcagagacaagagaatcagctggaagctt
gagggccaatcagcttggagtgtgctaaacaagatcgaccctgcctcaaa
aaaaaaaaaaaaaaaaaaaaaaacaaggtgaaaggtgagagctaactcct
gaaaggtgtcctctgattggcatgcaaataccatgacacatgtgtgtccc
acctcctgccggctgcctctctctctctctctctctctctctctctctct
ctctctcacaaacacacatttgcttgcacacacccacacacccaaataga
catagagaaacagataaacacatatggatatagaaaaacactcaaaatgg
agggggaggacggggagactgcactaagaaatgtaaaattaactgtatct
gccactgcaacaacaacatatcacccactaacgtttaactcacctcattt
ttatttgattgtttgtctgtttcttatttaacttgtgctcttgtgtttta
agctaaactggtcgaatttgagcaacgctcacctagagcatcagcctctc
ctttggagctagggattacaggggcttctttgaaaaatataaggtattga
cattctataaaagcaatcacaaagacaataactgcagcggcgatactcag
cagccactctggaagattctttgctggctgtaaaacagagttactgacca
tgggctgctgttgacaggaattgaatctgttggtgaatggttctagcgtt
actctgtcaaacaaaacaaccgggattttgtatgaaatgaaactaaatga
cgtctaaatgaattctaggcagccgttatttagacaaaatgattgggatg
gctcgttttctaaagagtatagaagaaaggtttcatatggactcttccgg
gtcaaaaattattatccctcggaactccaggtatatcgcg
gaattctctggtctgaatgagactttgggccctgggagggacctccacgc
catactctgtttcttgccggtgggctgctgggtgtgtttaacatgtacat
gagctggcttctgaagcaggcaggaggcaatagaaagaagtcgaagacct
taacttccccatcccagtcctcagaagattctaggaggcaaagagacacc
acaaaaaagacaagagagccatagagggtaggaggacagctagaccagga
agagtaagaaaagagaggaggtgggggtggggggaaggtcatactttcaa
ctttcacttggcgagtcttcatgaatgtgaagggtacgggcattccgctg
ttgataagtgtgcaatgcgtgtctttcatgtagattatcccgcaggcgct
gttcatgttagtttattttctacctgctttgcctatcaagtcctagaata
tgatcctgacatcactgacacttgctggtttctcctgtgcagtctattca
cgtctgcctcctgtgcttcattcattcattcattcattcatcacaaatca
aaaatcgttatgttggtgagagaatattgcagatgcacctatgtagaaat
ggccagaatagcatagggatgccacggggatggctgaggagaggctcttt
ctctgaggtgaaaaacagtagcatcaacagcaaagaaaggacatttggga
gggacagaattcttctggagggcccagccctcgctagagcatgctgtcct
gtctatgtggctgactacaactgcagcaatttcagaaccatggcttagct
tagagagctacagcatccatgtggatgttagaggaccactcgtgggagtc
tgttctcaattctgtctggtgagttcagaatggacttagtgtgtcaagct
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111812134_111812751
seq2: B6Ng01-029M19.g_353_969

seq1  AGGTCATACTTTCAACTTTCACTTGGCGAGTCTTCATGAATGTGAAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATACTTTCAACTTTCACTTGGCGAGTCTTCATGAATGTGAAGGGT  50

seq1  ACGGGCATTCCGCTGTTGATAAGTGTGCAATGCGTGTCTTTCATGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCATTCCGCTGTTGATAAGTGTGCAATGCGTGTCTTTCATGTAGAT  100

seq1  TATCCCGCAGGCGCTGTTCATGTTAGTTTATTTTCTACCTGCTTTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCGCAGGCGCTGTTCATGTTAGTTTATTTTCTACCTGCTTTGCCTA  150

seq1  TCAAGTCCTAGAATATGATCCTGACATCACTGACACTTGCTGGTTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTAGAATATGATCCTGACATCACTGACACTTGCTGGTTTCTCC  200

seq1  TGTGCAGTCTATTCACGTCTGCCTCCTGTGCTTCATTCATTCATTCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTCTATTCACGTCTGCCTCCTGTGCTTCATTCATTCATTCATTC  250

seq1  ATTCATCACAAATCAAAAATCGTTATGTTGGTGAGAGAATATTGCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCACAAATCAAAAATCGTTATGTTGGTGAGAGAATATTGCAGATG  300

seq1  CACCTATGTAGAAATGGCCAGAATAGCATAGGGATGCCACGGGGATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATGTAGAAATGGCCAGAATAGCATAGGGATGCCACGGGGATGGCT  350

seq1  GAGGAGAGGCTC-TTCTCTGAGGTGAAAAACAGTAGCATCAACAGCAAAG  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCTCTTTCTCTGAGGTGAAAAACAGTAGCATCAACAGCAAAG  400

seq1  AAAGGACATTTGGGAGGGACAGAATTCTTCTGGAGGGCCCAGCCCTCGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACATTTGGGAGGGACAGAATTCTTCTGGAGGGCCCAGCCCTCGCT  450

seq1  AGAGCATGCTGTCCTGTCTATGTGGCTGACTACAACTGCAGCAA-TTCAG  498
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAGCATGCTGTCCTGTCTATGTGGCTGACTACAACTGCAGCAATTTCAG  500

seq1  AACCATGGCTTAGCTTAGAGAGCTACAGCATCCATGTGGAGGTTAGAGGA  548
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACCATGGCTTAGCTTAGAGAGCTACAGCATCCATGTGGATGTTAGAGGA  550

seq1  CAACACGTGGGAGTCTGTTCTCAATTCTGTCTGGTGAGTTTCAGAAATGG  598
      | || ||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CCACTCGTGGGAGTCTGTTCTCAATTCTGTCTGGTGAG-TTCAG-AATGG  598

seq1  AACTCAGTGTGTCAGGCTTC  618
       ||| ||||||||| |||||
seq2  -ACTTAGTGTGTCAAGCTTC  617