BAC Information

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BAC

Clone NameB6Ng01-029P01
Chromosome9 (Build37)
Map Location 88,617,717 - 88,778,307
singlet/doubletdoublet
Overlap geneBcl2a1d, LOC100039674, EG666731
Upstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721
Downstream geneLOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P01.bB6Ng01-029P01.g
ACCDH859993DH859994
length1,055696
definitionDH859993|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P01, 5' end.DH859994|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,617,717 - 88,618,775)(88,777,612 - 88,778,307)
sequence
gaattccactttttgtgtcttgccatgggacaaatgtggattggcaagag
aaagaaggcaagagaaggtcagagaggactataacttgaggccttccttt
tagccccaacattgcttatctgactgtcctatccatgaaccccaaattaa
aggccaaagagtaaagattcaggagagggcatcaataagaaactgtaaaa
atccaggaaaaggtaggaagaagattttagcctctgtaaggtttagctta
gtaacccagccttttagatcatgagcacacccttatggaaaagtctctac
ctcatgctagaggtacaaaaaggatccttccaggtcatcatctgtcctta
cttcaatacctgtcccttgtattgaatgacagactcaaaactgaaatcat
gaaacatgtacagaaacaaatactagtaatttattcattaaagttgaaac
aaaatatctgcaactctggaaagacaagtttcatgtttgtaaatggaaat
gccaagtgctgataaccattctcgtgggagccaaggttctctctggtccg
tagtgttacttgaggagaaagagcatttcccagatctgtcctgtcatctg
cagaaaagtcagccagccagatttgggttcaaacttctttatgaagccat
cttcctatgagaaaatattgaacatttaaaaattggtgggataatctctc
tgctctcactacctgtaatcattacattttcaatatgttctctactccaa
ggctaaactccttgagaaacctttagaaacactgcccaatagaaatgtag
tttcgcctacatgtgctaatattacttcttttgctttgtagccacatatt
gagaaatctcttagtcaatcttcttttgctgtaaagagacatcatgacca
aggcagctcttatagaaaggaaaacaattaaatggggggcttacttttgg
tctcagaggttagtcattatcatcatgtcatgatgcacgtgcacacaggc
tgctaagacctatatcctgatctgatcctagaagagacgagatagagaca
gacaa
gaattcctggctctcaaaactgtatacagagagaaagtgaaaacatgagt
ctgttcatgctgtgggatgcccttgcttccttggttgagccttccattca
tctaagaagatctgaagacaatagcatcatggctgagagtacagcatgta
gttcaggggtgctgcccatccatgaagagttgtgtctgctgtccagttga
ctgcatatgtaaactaagatattgccacagatgcttgaaagcattcatgt
gaaaagtccgaagactccctgctgtgtctggtctttttacacagttcttt
gaagtaaaaagcaatcatgaaggaccctaaggtggctacatcagtaggtt
ttagactcctttaagaagctgacctgaaatataaaaataaaattactgga
gtactatagtatacttgattatagcactgtgagaaataagattttccaaa
cttgcttgccaatcaccaaggaaagattcagttaaacagtcctctgcaat
tctgaaaaacacctctttgtggcacaaatctagtgctaacaattacacat
actgagctttaaaactcttttattaattaaatcatgtcagttttcttttt
tctatttctgaccatccccataccccctaccttgttctctctcaaattca
tatcttctgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88617717_88618775
seq2: B6Ng01-029P01.b_41_1095

seq1  GAATTCCACTTTTTGTGTCTTGCCATGGGACAAATGTGGATTGGCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTTTGTGTCTTGCCATGGGACAAATGTGGATTGGCAAGAG  50

seq1  AAAGAAGGCAAGAGAAGGTCAGAGAGGACTATAACTTGAGGCCTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGCAAGAGAAGGTCAGAGAGGACTATAACTTGAGGCCTTCCTTT  100

seq1  TAGCCCCAACATTGCTTATCTGACTGTCCTATCCATGAACCCCAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCAACATTGCTTATCTGACTGTCCTATCCATGAACCCCAAATTAA  150

seq1  AGGCCAAAGAGTAAAGATTCAGGAGAGGGCATCAATAAGAAACTGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAGAGTAAAGATTCAGGAGAGGGCATCAATAAGAAACTGTAAAA  200

seq1  ATCCAGGAAAAGGTAGGAAGAAGATTTTAGCCTCTGTAAGGTTTAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGAAAAGGTAGGAAGAAGATTTTAGCCTCTGTAAGGTTTAGCTTA  250

seq1  GTAACCCAGCCTTTTAGATCATGAGCACACCCTTATGGAAAAGTCTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCAGCCTTTTAGATCATGAGCACACCCTTATGGAAAAGTCTCTAC  300

seq1  CTCATGCTAGAGGTACAAAAAGGATCCTTCCAGGTCATCATCTGTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTAGAGGTACAAAAAGGATCCTTCCAGGTCATCATCTGTCCTTA  350

seq1  CTTCAATACCTGTCCCTTGTATTGAATGACAGACTCAAAACTGAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATACCTGTCCCTTGTATTGAATGACAGACTCAAAACTGAAATCAT  400

seq1  GAAACATGTACAGAAACAAATACTAGTAATTTATTCATTAAAGTTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGTACAGAAACAAATACTAGTAATTTATTCATTAAAGTTGAAAC  450

seq1  AAAATATCTGCAACTCTGGAAAGACAAGTTTCATGTTTGTAAATGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTGCAACTCTGGAAAGACAAGTTTCATGTTTGTAAATGGAAAT  500

seq1  GCCAAGTGCTGATAACCATTCTCGTGGGAGCCAAGGTTCTCTCTGGTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGCTGATAACCATTCTCGTGGGAGCCAAGGTTCTCTCTGGTCCG  550

seq1  TAGTGTTACTTGAGGAGAAAGAGCATTTCCCAGATCTGTCCTGTCATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTACTTGAGGAGAAAGAGCATTTCCCAGATCTGTCCTGTCATCTG  600

seq1  CAGAAAAGTCAGCCAGCCAGATTTGGGTTCAAACTTCTTTATGAAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTCAGCCAGCCAGATTTGGGTTCAAACTTCTTTATGAAGCCAT  650

seq1  CTTCCTATGAGAAAATATTGAACATTTAAAAATTGGTGGGATAATCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATGAGAAAATATTGAACATTTAAAAATTGGTGGGATAATCTCTC  700

seq1  TGCTCTCACTACCTGTAATCATTACATTTTCAATATGTTCTCTACTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCACTACCTGTAATCATTACATTTTCAATATGTTCTCTACTCCAA  750

seq1  GGCTAAACTCCTTGAGAAACCTTTAGAAACACTGCCCAATAGAAATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACTCCTTGAGAAACCTTTAGAAACACTGCCCAATAGAAATGTAG  800

seq1  TTTCGCCTACATGTGCTAATATTACTTCTTTTGCTTTGTAGCCACATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCCTACATGTGCTAATATTACTTCTTTTGCTTTGTAGCCACATATT  850

seq1  GAGAAATCTCTTAGTCAATCTTCTTTTGCTGTAAAGAGACATCATGACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCTCTTAGTCAATCTTCTTTTGCTGTAAAGAGACATCATGACCA  900

seq1  AGGCAGCTCTTATAGAAAGG-AAACAATT-AATTGGGGGCTTACTTTTGG  948
      |||||||||||||||||||| |||||||| ||| ||||||||||||||||
seq2  AGGCAGCTCTTATAGAAAGGAAAACAATTAAATGGGGGGCTTACTTTTGG  950

seq1  TCTCAGAGGTTAGTCCATTATCATCATGTCATGATGCACGGTGGCACACA  998
      |||||||||||||| |||||||||||||||||||||||||   |||||||
seq2  TCTCAGAGGTTAGT-CATTATCATCATGTCATGATGCACG--TGCACACA  997

seq1  GGCTGCTAAGACCTATATCCTGATCTGATCCATAGGAAGAGACAGAGATA  1048
      ||||||||||||||||||||||||||||||| || |||||||| ||||||
seq2  GGCTGCTAAGACCTATATCCTGATCTGATCC-TA-GAAGAGAC-GAGATA  1044

seq1  GAGACAGACAA  1059
      |||||||||||
seq2  GAGACAGACAA  1055

seq1: chr9_88777612_88778307
seq2: B6Ng01-029P01.g_66_761 (reverse)

seq1  CACACACACACACACACACACACACACACACACAGCTCAGAAGATATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGCTCAGAAGATATGAA  50

seq1  TTTGAGAGAGAACAAGGTAGGGGGTATGGGGATGGTCAGAAATAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGAGAACAAGGTAGGGGGTATGGGGATGGTCAGAAATAGAAAAA  100

seq1  AGAAAACTGACATGATTTAATTAATAAAAGAGTTTTAAAGCTCAGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGACATGATTTAATTAATAAAAGAGTTTTAAAGCTCAGTATGT  150

seq1  GTAATTGTTAGCACTAGATTTGTGCCACAAAGAGGTGTTTTTCAGAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGTTAGCACTAGATTTGTGCCACAAAGAGGTGTTTTTCAGAATTG  200

seq1  CAGAGGACTGTTTAACTGAATCTTTCCTTGGTGATTGGCAAGCAAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACTGTTTAACTGAATCTTTCCTTGGTGATTGGCAAGCAAGTTTG  250

seq1  GAAAATCTTATTTCTCACAGTGCTATAATCAAGTATACTATAGTACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTATTTCTCACAGTGCTATAATCAAGTATACTATAGTACTCCA  300

seq1  GTAATTTTATTTTTATATTTCAGGTCAGCTTCTTAAAGGAGTCTAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTATTTTTATATTTCAGGTCAGCTTCTTAAAGGAGTCTAAAACC  350

seq1  TACTGATGTAGCCACCTTAGGGTCCTTCATGATTGCTTTTTACTTCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGTAGCCACCTTAGGGTCCTTCATGATTGCTTTTTACTTCAAAG  400

seq1  AACTGTGTAAAAAGACCAGACACAGCAGGGAGTCTTCGGACTTTTCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTAAAAAGACCAGACACAGCAGGGAGTCTTCGGACTTTTCACAT  450

seq1  GAATGCTTTCAAGCATCTGTGGCAATATCTTAGTTTACATATGCAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTCAAGCATCTGTGGCAATATCTTAGTTTACATATGCAGTCAA  500

seq1  CTGGACAGCAGACACAACTCTTCATGGATGGGCAGCACCCCTGAACTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGCAGACACAACTCTTCATGGATGGGCAGCACCCCTGAACTACA  550

seq1  TGCTGTACTCTCAGCCATGATGCTATTGTCTTCAGATCTTCTTAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTACTCTCAGCCATGATGCTATTGTCTTCAGATCTTCTTAGATGAA  600

seq1  TGGAAGGCTCAACCAAGGAAGCAAGGGCATCCCACAGCATGAACAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCTCAACCAAGGAAGCAAGGGCATCCCACAGCATGAACAGACTC  650

seq1  ATGTTTTCACTTTCTCTCTGTATACAGTTTTGAGAGCCAGGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCACTTTCTCTCTGTATACAGTTTTGAGAGCCAGGAATTC  696