BAC Information

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BAC

Clone NameB6Ng01-030D08
Chromosome9 (Build37)
Map Location 16,028,322 - 16,160,611
singlet/doubletdoublet
Overlap geneFat3
Upstream gene2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b
Downstream geneEG434373, LOC100040074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030D08.bB6Ng01-030D08.g
ACCDH860182DH860183
length1,118781
definitionDH860182|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D08, 5' end.DH860183|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,028,322 - 16,029,462)(16,159,831 - 16,160,611)
sequence
gaattctcctaatacacaactaaatctcctgcctatcaacccaaatatag
ggtcctgattgtcctcaaagaaatttcctcacagtaggaataatggttca
gataagaacatgagtcctaggaagtgggtttttgttaacaggtttctcct
tcctccaaagggaccttggtggcatttttaggcacttagaagtactcagc
ttataggtccccagtcaggttctgaggctgtcagagatttagaaccatgc
atttagcactatgatcttggtgtgctcattctctagacttcaattttaaa
caaataattcagtacatgaaaaaggagactacgggctcagtgcaccttcc
agtggccaacaagtcaatggataaaaatggccaagaccagcttttgattt
ctctcaggccaactagtcttctaatagaagaaactctttggtttaaatgc
cactgaagatggtgtcctttaagtaagacaatttcattccctttcctttt
ctcctccctctggggccttcttttcacagaagtcttactgaggtcaaatt
gtcctggaggttgcctagtcaaacttctggaatccaagccttctacacaa
actaatcttcaaaactatgcatagttttgaaatgtttctaaggaccctaa
aatttaaaagatcattaataccagattccagaaggcatgagtttcatcat
gtctaatgtcttgtatattctcccttgtatttaagcagaagaacgacact
aagaaagattcctgagtgatgcatgagagaccacattccctgggaaagag
tggcccagtgtccagagggctcaaattcagcattgtgatgggaggggaaa
gccctaacattataataaaatctacccactgaggataccagagaaacaaa
gaaggtctgggaatccaagaaaatgtcagcacactcaagtagcatcacta
aacagtagtcaaggtttctgactggaccacatgtttgggatggtggctga
gctagtgacccagattcttattttttatgagtcttgactgctagagttcc
tctattatctcatctggacaattaatagtccacagatcgctgtctcttaa
ttgagccactttagcgca
gaattcttagcagcactccgggaaagactgtgatttagcctccattttaa
gttcctaattctgcccattctcttaaaggacagtgtttggggaccttggt
tactcatgtggaaatgtgtgcagacaatcaacataaaatgaaggtgacac
tcctgaaatgtttctctgagacactgaagggcagtttctgtgttttcagc
aagatttttccttgatgcccttctgttgagttttgctggttcttcattgc
agcactgaacttactttagggaaaggaagtctaataaaaccaggagctca
ggggaaaaaaattaaactctgctctggccggagtcaatcctgtgttattc
taggagaccccagttctgggcatctgacttttttttttttttttacttta
aggggtaggatctgtgttcttttttgatttgggatttaatacaggctcct
aatgcttaatagtgaaaaagaaaagaaagaaaaggcatgtcttcacatat
atttcaatttcctcagttgtaaactttgcatgagtattatgctggccctc
agaagtggttttcagagctggtatttaaaatacaaaaaaagcaggacctt
atggtggggtgtctgccagggtgtcgtttaaggaaatatttctgatgctc
ctggcttggtgttttttgtttttgtttttgttttgttttggtttttgttt
tttttccccatgtctgtttattggagttggttgtcacctaatgcaacact
aatagaattttgtggctggaggttctctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16028322_16029462
seq2: B6Ng01-030D08.b_45_1162

seq1  GAATTCTCCTAATACACAACTAAATCTCCTGCCTATCAACCCAAATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAATACACAACTAAATCTCCTGCCTATCAACCCAAATATAG  50

seq1  GGTCCTGATTGTCCTCAAAGAAATTTCCTCACAGTAGGAATAATGGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGATTGTCCTCAAAGAAATTTCCTCACAGTAGGAATAATGGTTCA  100

seq1  GATAAGAACATGAGTCCTAGGAAGTGGGTTTTTGTTAACAGGTTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAACATGAGTCCTAGGAAGTGGGTTTTTGTTAACAGGTTTCTCCT  150

seq1  TCCTCCAAAGGGACCTTGGTGGCATTTTTAGGCACTTAGAAGTACTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAAGGGACCTTGGTGGCATTTTTAGGCACTTAGAAGTACTCAGC  200

seq1  TTATAGGTCCCCAGTCAGGTTCTGAGGCTGTCAGAGATTTAGAACCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTCCCCAGTCAGGTTCTGAGGCTGTCAGAGATTTAGAACCATGC  250

seq1  ATTTAGCACTATGATCTTGGTGTGCTCATTCTCTAGACTTCAATTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCACTATGATCTTGGTGTGCTCATTCTCTAGACTTCAATTTTAAA  300

seq1  CAAATAATTCAGTACATGAAAAAGGAGACTACGGGCTCAGTGCACCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTCAGTACATGAAAAAGGAGACTACGGGCTCAGTGCACCTTCC  350

seq1  AGTGGCCAACAAGTCAATGGATAAAAATGGCCAAGACCAGCTTTTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAACAAGTCAATGGATAAAAATGGCCAAGACCAGCTTTTGATTT  400

seq1  CTCTCAGGCCAACTAGTCTTCTAATAGAAGAAACTCTTTGGTTTAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGCCAACTAGTCTTCTAATAGAAGAAACTCTTTGGTTTAAATGC  450

seq1  CACTGAAGATGGTGTCCTTTAAGTAAGACAATTTCATTCCCTTTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGATGGTGTCCTTTAAGTAAGACAATTTCATTCCCTTTCCTTTT  500

seq1  CTCCTCCCTCTGGGGCCTTCTTTTCACAGAAGTCTTACTGAGGTCAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCTGGGGCCTTCTTTTCACAGAAGTCTTACTGAGGTCAAATT  550

seq1  GTCCTGGAGGTTGCCTAGTCAAACTTCTGGAATCCAAGCCTTCTACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAGGTTGCCTAGTCAAACTTCTGGAATCCAAGCCTTCTACACAA  600

seq1  ACTAATCTTCAAAACTATGCATAGTTTTGAAATGTTTCTAAGGACCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCTTCAAAACTATGCATAGTTTTGAAATGTTTCTAAGGACCCTAA  650

seq1  AATTTAAAAGATCATTAATACCAGATTCCAGAAGGCATGAGTTTCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAGATCATTAATACCAGATTCCAGAAGGCATGAGTTTCATCAT  700

seq1  GTCTAATGTCTTTGTATATTCTCCCTTGTATTTAAGCAGAAGAACGACAC  750
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGTC-TTGTATATTCTCCCTTGTATTTAAGCAGAAGAACGACAC  749

seq1  TAAGAAAGATTCCTGAGTGATGCATGAGAGACCACATTCCCTGGGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGATTCCTGAGTGATGCATGAGAGACCACATTCCCTGGGAAAGA  799

seq1  GTGGCCCAGTGTCCAGAGGGCTCAAATTCAGCATTGTGATGGGAGGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAGTGTCCAGAGGGCTCAAATTCAGCATTGTGATGGGAGGGGAA  849

seq1  AGCCCTAACATTATAATAAAATCTACCCACTGAGGATACCAGAGAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAACATTATAATAAAATCTACCCACTGAGGATACCAGAGAAACAA  899

seq1  AGAAGGGTCTGGGAATCCAAGAAACATGTCAGCAACACTCAAGTAGCATC  950
      |||| ||||||||||||||||||| |||||||| ||||||||||||||||
seq2  AGAA-GGTCTGGGAATCCAAGAAA-ATGTCAGC-ACACTCAAGTAGCATC  946

seq1  ACTAAACAGTAAGTTCAAGGGTTTCTGACCTGGACACACATGTTTTGGGA  1000
      |||||||||||   |||| ||||||||| |||||| |||||| |||||||
seq2  ACTAAACAGTA--GTCAA-GGTTTCTGA-CTGGAC-CACATG-TTTGGGA  990

seq1  TGGTGGCCTGAGCTTAGTGACCCAGAATTCTCTATTTTATATTGAGGTCT  1050
      |||||| |||||| ||||||||||| ||||| |||||| || ||| ||||
seq2  TGGTGG-CTGAGC-TAGTGACCCAG-ATTCT-TATTTTTTA-TGA-GTCT  1034

seq1  TGGAACTGCTAGAGTTCCTCTATTATCTCATCTGGGACAAATTAATAGTT  1100
      ||  ||||||||||||||||||||||||||||| |||| |||||||||| 
seq2  TG--ACTGCTAGAGTTCCTCTATTATCTCATCT-GGAC-AATTAATAGT-  1079

seq1  CCAACAGA-CGCTGTCTCTTTAATTGTAGCCACCTTAGCGCA  1141
       | ||||| ||||||||| ||||||| |||||| ||||||||
seq2  -CCACAGATCGCTGTCTC-TTAATTG-AGCCACTTTAGCGCA  1118

seq1: chr9_16159831_16160611
seq2: B6Ng01-030D08.g_69_849 (reverse)

seq1  GTGAGAGAACCT-CAG-CACATAATTCTATTAGTGTTGCACTTAGGTGAC  48
      |||||||||||| ||| |||| |||||||||||||||||| |||||||||
seq2  GTGAGAGAACCTCCAGCCACAAAATTCTATTAGTGTTGCA-TTAGGTGAC  49

seq1  AACCAACT-CAATAAACAGACATGGGGAAAAAAAACAAAAAACAAAAACA  97
      |||||||| |||||||||||||||||||||||||||||||| |||||   
seq2  AACCAACTCCAATAAACAGACATGGGGAAAAAAAACAAAAACCAAAA--C  97

seq1  AAAACAAAAACAAAAACAAAAAACACCAAGCCAGGAGCATCAGAAATATT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAACAAAAAACACCAAGCCAGGAGCATCAGAAATATT  147

seq1  TCCTTAAACGACACCCTGGCAGACACCCCACCATAAGGTCCTGCTTTTTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACGACACCCTGGCAGACACCCCACCATAAGGTCCTGCTTTTTT  197

seq1  TGTATTTTAAATACCAGCTCTGAAAACCACTTCTGAGGGCCAGCATAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTAAATACCAGCTCTGAAAACCACTTCTGAGGGCCAGCATAATA  247

seq1  CTCATGCAAAGTTTACAACTGAGGAAATTGAAATATATGTGAAGACATGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCAAAGTTTACAACTGAGGAAATTGAAATATATGTGAAGACATGC  297

seq1  CTTTTCTTTCTTTTCTTTTTCACTATTAAGCATTAGGAGCCTGTATTAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCTTTTCTTTTTCACTATTAAGCATTAGGAGCCTGTATTAAA  347

seq1  TCCCAAATCAAAAAAGAACACAGATCCTACCCCTTAAAGTAAAAAAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATCAAAAAAGAACACAGATCCTACCCCTTAAAGTAAAAAAAAAA  397

seq1  AAAAAAGTCAGATGCCCAGAACTGGGGTCTCCTAGAATAACACAGGATTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTCAGATGCCCAGAACTGGGGTCTCCTAGAATAACACAGGATTG  447

seq1  ACTCCGGCCAGAGCAGAGTTTAATTTTTTTCCCCTGAGCTCCTGGTTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGGCCAGAGCAGAGTTTAATTTTTTTCCCCTGAGCTCCTGGTTTTA  497

seq1  TTAGACTTCCTTTCCCTAAAGTAAGTTCAGTGCTGCAATGAAGAACCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTCCTTTCCCTAAAGTAAGTTCAGTGCTGCAATGAAGAACCAGC  547

seq1  AAAACTCAACAGAAGGGCATCAAGGAAAAATCTTGCTGAAAACACAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAACAGAAGGGCATCAAGGAAAAATCTTGCTGAAAACACAGAAA  597

seq1  CTGCCCTTCAGTGTCTCAGAGAAACATTTCAGGAGTGTCACCTTCATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTCAGTGTCTCAGAGAAACATTTCAGGAGTGTCACCTTCATTTT  647

seq1  ATGTTGATTGTCTGCACACATTTCCACATGAGTAACCAAGGTCCCCAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATTGTCTGCACACATTTCCACATGAGTAACCAAGGTCCCCAAAC  697

seq1  ACTGTCCTTTAAGAGAATGGGCAGAATTAGGAACTTAAAATGGAGGCTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTTTAAGAGAATGGGCAGAATTAGGAACTTAAAATGGAGGCTAA  747

seq1  ATCACAGTCTTTCCCGGAGTGCTGCTAAGAATTC  781
      ||||||||||||||||||||||||||||||||||
seq2  ATCACAGTCTTTCCCGGAGTGCTGCTAAGAATTC  781