BAC Information

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BAC

Clone NameB6Ng01-031A21
Chromosome9 (Build37)
Map Location 76,575,354 - 76,717,362
singlet/doubletdoublet
Overlap genenone
Upstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031A21.bB6Ng01-031A21.g
ACCDH860777DH860778
length1,054820
definitionDH860777|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A21, 5' end.DH860778|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,716,303 - 76,717,362)(76,575,354 - 76,576,614)
sequence
gaattcattcatgtccgtcccacacagggcacctgtatatctgccaattg
cttgtatctgctgtgaacagtgagttggaaattgatgaatgtgcatacca
gccatgtctacacagtgccacgtgtcaggatgtttttggggcttacttct
gtgactacacttatggattctttgggaaccatgatgaagtcagctttgat
gaatgtgccagtcagccatgtcttcatggaggtctatgtggatgaaggaa
acaactgctactgtgactgaacaggtagtggaatcacaaggacacactgt
gagactttgatgcctccttattggtcaaagccttgtcacaatcatacaac
atgtgaaacatccttaatttcaaaagaaaaagtaatgcacacatagtaga
cacagttagcaaaggccacattagccagttgatcttaaattagatctcat
ttactgctgtttaaattaacagcagtaaatgagatatcacactggcattt
ccatcttgatatgtgatgtcactgtggtgaaaagtctttcaaatgcctga
ttacttgttaggatacatcagacaaactgagattgaagtagcttctaaaa
aattgctagtctatattttgaaacaaacatgacactacacaaatttccac
ccatgatgcaacatagctattgcatagatgaactcaggacagctgtggtc
acctacaaaggacctgtaaaagatcaaaacaactcaaatttaaatataga
ggaaggaatatgccctgtgacgccactcctagataaggaactattggcaa
ttgatggctgaagggagtgggagagttatttttctttgaggttgccacag
tgaatcacctcacacctatgtgcagaactacagcactaatcttgactcag
tagacttaaactatctcatcatgcaatagtgtctgggtttggtggctgat
tatgggatggatcctgaatggggtagtctctggatagtccatcctttcgt
ctaactccaactttgtctctgtacttctatcatgagtattttgttcctat
tcta
gaattcattgctattcctgacatctggttaagggttcaaaagcaattaca
aagttcagacagagcatacagaagtctgatgttcctgaaagaagagatac
tacttattgaaagatagaatgcagcttttgacttctcagtactccgtctt
aggtagatctgtcaaggaaaatgaaggcttacaaattattatcctgaaat
agaaaatgttaagaatgttattcaattttactttgaaagaattccatgtt
accttgaaatagttatgaaatcagttattcattaatttatgtatggatta
cctcagtgtttgctatgaaaatagtgacagtaagaactctaagctacact
ctatcactacattgttgactgggacagataacaccaaacacaagggaaat
gaagggctctaaaaatactttttaaacccatacgtaagaaaaaacagagg
taatgaccttagaatattccagctttgccaagagcttttgatgttggttt
gaggatcagggtggggtgaggtaacacatgggggagggacacaagggtag
acagaaaggggacacgttagctactgggaggagatttgcatgggtttaat
tatttgtgtgttgtattgttttaatatactaaaatattgaataatttaat
tgcctagttatctgagtaaccacttcacagaaactcaatgaatgcatatt
tgcctctccatatatcatatttgattctgggtgaatactgtgatgacaga
aatgtagacaaatctatgcagaagaagcaaaacgtgtgaggttgttttaa
agtgatatataatactgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76716303_76717362
seq2: B6Ng01-031A21.b_43_1096 (reverse)

seq1  TAGAATAGGGAACAAAATACTCATGATAGGAGTTACAGAGACAAAGTTTG  50
      ||||||| ||||||||||||||||||||| || ||||||||||||| |||
seq2  TAGAATA-GGAACAAAATACTCATGATAGAAG-TACAGAGACAAAG-TTG  47

seq1  GAGCTAAGACGAAAGGATGGACTATCCAGAGACTACCCCATTCAGGGATC  100
      ||| | |||||||||||||||||||||||||||||||||||||| |||||
seq2  GAG-TTAGACGAAAGGATGGACTATCCAGAGACTACCCCATTCA-GGATC  95

seq1  CATCCCATAATCAGCCACCAAACCCAGACACTATTGCATGATGAGATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCCCATAATCAGCCACCAAACCCAGACACTATTGCATGATGAGATAG-  144

seq1  TTTAAGTCTACTGAGTCAAGATTAGTGCTGTAGTTCTGCACATAGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCTACTGAGTCAAGATTAGTGCTGTAGTTCTGCACATAGGTGTG  194

seq1  AGGTGATTCACTGTGGCAACCTCAAAGAAAAATAACTCTCCCACTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTCACTGTGGCAACCTCAAAGAAAAATAACTCTCCCACTCCCTT  244

seq1  CAGCCATCAATTGCCAATAGTTCCTTATCTAGGAGTGGCGTCACAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCAATTGCCAATAGTTCCTTATCTAGGAGTGGCGTCACAGGGCA  294

seq1  TATTCCTTCCTCTATATTTAAATTTGAGTTGTTTTGATCTTTTACAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTCCTCTATATTTAAATTTGAGTTGTTTTGATCTTTTACAGGTC  344

seq1  CTTTGTAGGTGACCACAGCTGTCCTGAGTTCATCTATGCAATAGCTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGGTGACCACAGCTGTCCTGAGTTCATCTATGCAATAGCTATGT  394

seq1  TGCATCATGGGTGGAAATTTGTGTAGTGTCATGTTTGTTTCAAAATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATGGGTGGAAATTTGTGTAGTGTCATGTTTGTTTCAAAATATAG  444

seq1  ACTAGCAATTTTTTAGAAGCTACTTCAATCTCAGTTTGTCTGATGTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAATTTTTTAGAAGCTACTTCAATCTCAGTTTGTCTGATGTATCC  494

seq1  TAACAAGTAATCAGGCATTTGAAAGACTTTTCACCACAGTGACATCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTAATCAGGCATTTGAAAGACTTTTCACCACAGTGACATCACAT  544

seq1  ATCAAGATGGAAATGCCAGTGTGATATCTCATTTACTGCTGTTAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATGGAAATGCCAGTGTGATATCTCATTTACTGCTGTTAATTTAA  594

seq1  ACAGCAGTAAATGAGATCTAATTTAAGATCAACTGGCTAATGTGGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTAAATGAGATCTAATTTAAGATCAACTGGCTAATGTGGCCTTT  644

seq1  GCTAACTGTGTCTACTATGTGTGCATTACTTTTTCTTTTGAAATTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGTGTCTACTATGTGTGCATTACTTTTTCTTTTGAAATTAAGGA  694

seq1  TGTTTCACATGTTGTATGATTGTGACAAGGCTTTGACCAATAAGGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACATGTTGTATGATTGTGACAAGGCTTTGACCAATAAGGAGGCA  744

seq1  TCAAAGTCTCACAGTGTGTCCTTGTGATTCCACTACCTGTTCAGTCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCTCACAGTGTGTCCTTGTGATTCCACTACCTGTTCAGTCACAG  794

seq1  TAGCAGTTGTTTCCTTCATCCACATAGACCTCCATGAAGACATGGCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTGTTTCCTTCATCCACATAGACCTCCATGAAGACATGGCTGAC  844

seq1  TGGCACATTCATCAAAGCTGACTTCATCATGGTTCCCAAAGAATCCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATTCATCAAAGCTGACTTCATCATGGTTCCCAAAGAATCCATAA  894

seq1  GTGTAGTCACAGAAGTAAGCCCCAAAAACATCCTGACACGTGGCACTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTCACAGAAGTAAGCCCCAAAAACATCCTGACACGTGGCACTGTG  944

seq1  TAGACATGGCTGGTATGCACATTCATCAATTTCCAACTCACTGTTCACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGGCTGGTATGCACATTCATCAATTTCCAACTCACTGTTCACAG  994

seq1  CAGATACAAGCAATTGGCAGATATACAGGTGCCCTGTGTGGGACGGACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAAGCAATTGGCAGATATACAGGTGCCCTGTGTGGGACGGACAT  1044

seq1  GAATGAATTC  1060
      ||||||||||
seq2  GAATGAATTC  1054

seq1: chr9_76575354_76576614
seq2: B6Ng01-031A21.g_66_885

seq1  GAATTCATTGCTATTCCTGACATCTGGTTAAGGGTTCAAAAGCAATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTATTCCTGACATCTGGTTAAGGGTTCAAAAGCAATTACA  50

seq1  AAGTTCAGACAGAGCATACAGAAGTCTGATGTTCCTGAAAGAAGAGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGACAGAGCATACAGAAGTCTGATGTTCCTGAAAGAAGAGATAC  100

seq1  TACTTATTGAAAGATAGAATGCAGCTTTTGACTTCTCAGTACTCCGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTGAAAGATAGAATGCAGCTTTTGACTTCTCAGTACTCCGTCTT  150

seq1  AGGTAGATCTGTCAAGGAAAATGAAGGCTTACAAATTATTATCCTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATCTGTCAAGGAAAATGAAGGCTTACAAATTATTATCCTGAAAT  200

seq1  AGAAAATGTTAAGAATGTTATTCAATTTTACTTTGAAAGAATTCCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTTAAGAATGTTATTCAATTTTACTTTGAAAGAATTCCATGTT  250

seq1  ACCTTGAAATAGTTATGAAATCAGTTATTCATTAATTTATGTATGGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAATAGTTATGAAATCAGTTATTCATTAATTTATGTATGGATTA  300

seq1  CCTCAGTGTTTGCTATGAAAATAGTGACAGTAAGAACTCTAAGCTACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGTTTGCTATGAAAATAGTGACAGTAAGAACTCTAAGCTACACT  350

seq1  CTATCACTACATTGTTGACTGGGACAGATAACACCAAACACAAGGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTACATTGTTGACTGGGACAGATAACACCAAACACAAGGGAAAT  400

seq1  GAAGGGCTCTAAAAATACTTTTTAAACCCATACGTAAGAAAAAACAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTCTAAAAATACTTTTTAAACCCATACGTAAGAAAAAACAGAGG  450

seq1  TAATGACCTTAGAATATTCCAGCTTTGCCAAGAGCTTTTGATGTTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCTTAGAATATTCCAGCTTTGCCAAGAGCTTTTGATGTTGGTTT  500

seq1  GAGGATCAGGGTGGGGTGAGGTAACACATGGGGGAGGGACACAAGGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCAGGGTGGGGTGAGGTAACACATGGGGGAGGGACACAAGGGTAG  550

seq1  ACAGAAAGGGGACACGTTAGCTACTGGGAGGAGATTTGCATGGGTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGGGACACGTTAGCTACTGGGAGGAGATTTGCATGGGTTTAAT  600

seq1  TATTTGTGTGTTGTATTGTTTTAATATACTAAAATATTGAATAATTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTGTTGTATTGTTTTAATATACTAAAATATTGAATAATTTAAT  650

seq1  TGCCTAGTTATCTGAGTAACCACTTCACAGAAACTCAATGAATGCATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTTATCTGAGTAACCACTTCACAGAAACTCAATGAATGCATATT  700

seq1  TGCCTCTCCATATATCATAATTTGATTCTGGGTGAATACGGTGATGACAG  750
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TGCCTCTCCATATATCAT-ATTTGATTCTGGGTGAATACTGTGATGACAG  749

seq1  AAATGTAGACAAATCTATGCAG-AGAAGCAAAACGTGTGAGGTGATTTTA  799
      |||||||||||||||||||||| ||||||||||||||||||||  |||||
seq2  AAATGTAGACAAATCTATGCAGAAGAAGCAAAACGTGTGAGGTTGTTTTA  799

seq1  AAGTTGATATATAATATTGTGGGGATATTCTTTCTGATACGCAGGGAGAA  849
      ||| |||||||||||| || ||                            
seq2  AAG-TGATATATAATACTGGGG----------------------------  820

seq1  AGGGGGGAAGAAACAGCCATGATGCCTCTGTCCCACACAACTAAAGGGCT  899
                                                        
seq2  --------------------------------------------------  820

seq1  TGTGCAAATAGACTGAGGATCATGGCCTTCACTGCTAAGAAACACCTAAC  949
                                                        
seq2  --------------------------------------------------  820

seq1  AAAGAGGAACAGCTGTTCTGTAGAACAGGTTCACACTACTATCTTCCTCC  999
                                                        
seq2  --------------------------------------------------  820

seq1  TACCCAAGACTGGTGTTTTCTTGGGACCATTCTCTGGAATCCTGAATTTC  1049
                                                        
seq2  --------------------------------------------------  820

seq1  CTTAGGTTCCCATGGCATCTTTGGCCTATTCATTACCTCCAAACCTTTTT  1099
                                                        
seq2  --------------------------------------------------  820

seq1  GTAGAGCCTAGAAGGTTTTCTTTCTTTCTTTCTTTTTTCTTTTTTTTTAA  1149
                                                        
seq2  --------------------------------------------------  820

seq1  TTACATATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCACC  1199
                                                        
seq2  --------------------------------------------------  820

seq1  CCCCCCACTCCCCTAACCTACCCATTCCCATTTTTTGGCCCTGGCATTCC  1249
                                                        
seq2  --------------------------------------------------  820

seq1  CCTGTACTGGGG  1261
                  
seq2  ------------  820