BAC Information

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BAC

Clone NameB6Ng01-031E03
Chromosome9 (Build37)
Map Location 46,908,409 - 47,044,504
singlet/doubletdoublet
Overlap genenone
Upstream geneBC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031E03.bB6Ng01-031E03.g
ACCDH860927DH860928
length1,063645
definitionDH860927|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E03, 5' end.DH860928|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,043,438 - 47,044,504)(46,908,409 - 46,909,053)
sequence
gaattcttcgtgggctaagagttaatgaaacagcactcccatccattttc
tggaagcccctccttgggcatgtggctcagttccttgagtttctgggcag
agctgttactggggtcatgataaggcccgaggaagagcccactgacaagt
gcagaatgggaaccctccggaacaatgtctggttgtcatgatggcatgtt
ggaaaattgatcaccttactctgcctaaagagaaacctccgcatgtcacc
accaatcatgcaaactagactctcaaaatgagattagaccggagcgccac
caatcagagctggagtcccaattggtctatgacttcatttaaaggtccag
tgccagcaggaagagaaaagaaatcaatagtacattttctctggcatcaa
ttttgctttttgctaaatgaaaatgcttatattcccttccttgttccctc
tgccagagaggatgttacttcttcccacctccctattctgacccctcccc
accccaaccctgtggtgacaggtgaactcatgcagagaacctcctgcagg
gaagcccttcagagcattgcagaggaggacacctcagccaaatatttgca
gtaaccgcaagcttcccccagcaggcctccctgctacagtgccagggcct
aacccctgttctgagccactgctggtcactgcaattgttaatgacattag
tcctatagactcaggacccctctagtgcaccccaactccaagcactagac
tcaggacccctctagtgcaccccaattctaagcactgtgtcaagctggag
ctgcaggccccatgaacagatgtctgagagaacagatagatctgtgtaac
tcactctcaacctctggctacagaggtagcaaagagacttccttataaac
tggtttactgtatcacggctgtggcgatggcccaggccacaaagcttgcc
atgtaagcttgagagcctgatttcattcccttagaatgcaggtccaaagc
ttgacatggtaataggagtttgtaatcctgtggtgggggagggagaaaac
agaggattctgtg
gaattcttttcattgttaaaacaaagcacacatacacaaaacaccctact
aactggatttagctgctcccccaaaaccctatgctctggacccacttcct
caccctcttaatccttatcaaccagctgccactatttaaaccacctctcg
aggtcaccaaggacttctgaaattccacattgcagacaccctggctttct
gcagcgtccatctccaagggttacattcacaaactctttgcttttcccag
agccatcaccctgatctagaccttattttctgtttacatatctgctgttt
gtcctctagtccagcagagatagcattccccaaggtctggcttcctccca
tatccccctcttcctccacattcccccataccaccacttctgcttcacta
atttatatcaccttgtccattctgctggtgtccaaacccaggtcaacctc
caatctctttctagaatccagactcacatccacattgcttgggaggagcc
caacctgtatgcccatcttggatttctccaaaagcaaaagtttgtggcaa
gggaggggtataggttatgtatagggggatgaccccaggaggcaagagga
gggagcagagtgagtaaattgtgagtgggtagtagtgatgtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47043438_47044504
seq2: B6Ng01-031E03.b_45_1107 (reverse)

seq1  CACAGGAATCCTCCTGTCTCTCCCT-CCCCACCACAGGGATTACAAACTC  49
      |||| ||||||||   | ||||||| |||||||||| |||||||||||||
seq2  CACA-GAATCCTCTGTTTTCTCCCTCCCCCACCACA-GGATTACAAACTC  48

seq1  CTATTACCATGTCAAGCTTTTGGACCTGCATTCTAAGGGAATGAAATCAG  99
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTATTACCATGTCAAGC-TTTGGACCTGCATTCTAAGGGAATGAAATCAG  97

seq1  GCTCTCAAGCTTACATGGCAAGCTTTGTGGCCTGGGCCATCGCCACAGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAGCTTACATGGCAAGCTTTGTGGCCTGGGCCATCGCCACAGCC  147

seq1  GTGATACAGTAAAACCAGTTTATAAGGAAGTCTCTTTGCTACCTCTGTAG  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAGT-AAACCAGTTTATAAGGAAGTCTCTTTGCTACCTCTGTAG  196

seq1  CCAGAGGTTGAGAGTGAGTTTACACAGATCTATCTGTTCTCTCAGACATC  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAGAGGTTGAGAGTGAG-TTACACAGATCTATCTGTTCTCTCAGACATC  245

seq1  TGTTCATGGGGCCTGCAGCTCCAGCTTGACACAGTGCTTAGAATTGGGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGGGGCCTGCAGCTCCAGCTTGACACAGTGCTTAGAATTGGGGT  295

seq1  GCACTAGAGGGGTCCTGAGTCTAGTGCTTGGAGTTGGGGTGCACTAGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGAGGGGTCCTGAGTCTAGTGCTTGGAGTTGGGGTGCACTAGAGG  345

seq1  GGTCCTGAGTCTATAGGACTAATGTCATTAACAATTGCAGTGACCAGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTCTATAGGACTAATGTCATTAACAATTGCAGTGACCAGCAG  395

seq1  TGGCTCAGAACAGGGGTTAGGCCCTGGCACTGTAGCAGGGAGGCCTGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAACAGGGGTTAGGCCCTGGCACTGTAGCAGGGAGGCCTGCTG  445

seq1  GGGGAAGCTTGCGGTTACTGCAAATATTTGGCTGAGGTGTCCTCCTCTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGCTTGCGGTTACTGCAAATATTTGGCTGAGGTGTCCTCCTCTGC  495

seq1  AATGCTCTGAAGGGCTTCCCTGCAGGAGGTTCTCTGCATGAGTTCACCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGAAGGGCTTCCCTGCAGGAGGTTCTCTGCATGAGTTCACCTG  545

seq1  TCACCACAGGGTTGGGGTGGGGAGGGGTCAGAATAGGGAGGTGGGAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAGGGTTGGGGTGGGGAGGGGTCAGAATAGGGAGGTGGGAAGAA  595

seq1  GTAACATCCTCTCTGGCAGAGGGAACAAGGAAGGGAATATAAGCATTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATCCTCTCTGGCAGAGGGAACAAGGAAGGGAATATAAGCATTTTC  645

seq1  ATTTAGCAAAAAGCAAAATTGATGCCAGAGAAAATGTACTATTGATTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAAAAAGCAAAATTGATGCCAGAGAAAATGTACTATTGATTTCT  695

seq1  TTTCTCTTCCTGCTGGCACTGGACCTTTAAATGAAGTCATAGACCAATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCCTGCTGGCACTGGACCTTTAAATGAAGTCATAGACCAATTG  745

seq1  GGACTCCAGCTCTGATTGGTGGCGCTCCGGTCTAATCTCATTTTGAGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGCTCTGATTGGTGGCGCTCCGGTCTAATCTCATTTTGAGAGT  795

seq1  CTAGTTTGCATGATTGGTGGTGACATGCGGAGGTTTCTCTTTAGGCAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGCATGATTGGTGGTGACATGCGGAGGTTTCTCTTTAGGCAGAG  845

seq1  TAAGGTGATCAATTTTCCAACATGCCATCATGACAACCAGACATTGTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGATCAATTTTCCAACATGCCATCATGACAACCAGACATTGTTCC  895

seq1  GGAGGGTTCCCATTCTGCACTTGTCAGTGGGCTCTTCCTCGGGCCTTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTCCCATTCTGCACTTGTCAGTGGGCTCTTCCTCGGGCCTTATC  945

seq1  ATGACCCCAGTAACAGCTCTGCCCAGAAACTCAAGGAACTGAGCCACATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCAGTAACAGCTCTGCCCAGAAACTCAAGGAACTGAGCCACATG  995

seq1  CCCAAGGAGGGGCTTCCAGAAAATGGATGGGAGTGCTGTTTCATTAACTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGGGGCTTCCAGAAAATGGATGGGAGTGCTGTTTCATTAACTC  1045

seq1  TTAGCCCACGAAGAATTC  1067
      ||||||||||||||||||
seq2  TTAGCCCACGAAGAATTC  1063

seq1: chr9_46908409_46909053
seq2: B6Ng01-031E03.g_67_711

seq1  GAATTCTTTTCATTGTTAAAACAAAGCACACATACACAAAACACCCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATTGTTAAAACAAAGCACACATACACAAAACACCCTACT  50

seq1  AACTGGATTTAGCTGCTCCCCCAAAACCCTATGCTCTGGACCCACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATTTAGCTGCTCCCCCAAAACCCTATGCTCTGGACCCACTTCCT  100

seq1  CACCCTCTTAATCCTTATCAACCAGCTGCCACTATTTAAACCACCTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTAATCCTTATCAACCAGCTGCCACTATTTAAACCACCTCTCG  150

seq1  AGGTCACCAAGGACTTCTGAAATTCCACATTGCAGACACCCTGGCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCAAGGACTTCTGAAATTCCACATTGCAGACACCCTGGCTTTCT  200

seq1  GCAGCGTCCATCTCCAAGGGTTACATTCACAAACTCTTTGCTTTTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTCCATCTCCAAGGGTTACATTCACAAACTCTTTGCTTTTCCCAG  250

seq1  AGCCATCACCCTGATCTAGACCTTATTTTCTGTTTACATATCTGCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACCCTGATCTAGACCTTATTTTCTGTTTACATATCTGCTGTTT  300

seq1  GTCCTCTAGTCCAGCAGAGATAGCATTCCCCAAGGTCTGGCTTCCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTAGTCCAGCAGAGATAGCATTCCCCAAGGTCTGGCTTCCTCCCA  350

seq1  TATCCCCCTCTTCCTCCACATTCCCCCATACCACCACTTCTGCTTCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCCTCTTCCTCCACATTCCCCCATACCACCACTTCTGCTTCACTA  400

seq1  ATTTATATCACCTTGTCCATTCTGCTGGTGTCCAAACCCAGGTCAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCACCTTGTCCATTCTGCTGGTGTCCAAACCCAGGTCAACCTC  450

seq1  CAATCTCTTTCTAGAATCCAGACTCACATCCACATTGCTTGGGAGGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTTTCTAGAATCCAGACTCACATCCACATTGCTTGGGAGGAGCC  500

seq1  CAACCTGTATGCCCATCTTGGATTTCTCCAAAAGCAAAAGTTTGTGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTATGCCCATCTTGGATTTCTCCAAAAGCAAAAGTTTGTGGCAA  550

seq1  GGGAGGGGTATAGGTTATGTATAGGGGGATGACCCCAGGAGGCAAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTATAGGTTATGTATAGGGGGATGACCCCAGGAGGCAAGAGGA  600

seq1  GGGAGCAGAGTGAGTAAATTGGGAGTGGGTAGTAGTGATGTGAGA  645
      ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGAGCAGAGTGAGTAAATTGTGAGTGGGTAGTAGTGATGTGAGA  645