BAC Information

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BAC

Clone NameB6Ng01-031I02
Chromosome9 (Build37)
Map Location 92,126,518 - 92,243,095
singlet/doubletdoublet
Overlap genePlscr1, Plscr2, 1700057G04Rik, LOC666850
Upstream geneZic1, Zic4, LOC331000
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I02.bB6Ng01-031I02.g
ACCDH861097DH861098
length1,056714
definitionDH861097|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I02, 5' end.DH861098|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,126,518 - 92,127,573)(92,242,381 - 92,243,095)
sequence
gaattcctgtcctaacttcctctgatgatggactatgatctagaagtgta
cactcaataaatcctttctttcccaacttgcttttaggtcagggtgtttt
ttgtcatagcaatagaaaccctaagatgctgtttgagaactttattcatg
aaaataatgtgtttggatcaaatccatgcccactccatttcctcaaactt
tccccatactcctctttcttctcccaactttatttttttatctatttttt
atttatcttatttattattatttttgtttgtattttttttcgagacaggg
tttctttgtatagccctggctgtcctagaactcactttgtagaccaggct
ggcctcaaactcagaaatctgcctgcctctgcctcctgagctcccaactt
tatatactcgggcgtttgtttgtttgtttgttttattttgttttttttac
agatactgagcacactcagtgttgtcaatatgtgcacaggtatagaccat
cctgtgaaccatgagcaaatgagcaggaattgcatccctgaagaaaataa
actcttccttctccaatagtcatcaaccacctttagctcctcagctagag
ctgtgagcctgtgattcctcactgatcgctgctggaatggtgcctgactt
gatcttgttcaggtcttgtgtatacagtcaaagccactgtgggttcatat
atgctacgctcctgtcatacccagaaaaacagtttcacagctgttctcca
ctatttcttgcctttgtacgtctttctgcctcttcttctctgataatcgt
tgaggctttagaaataggggtatcttttccaagagtggcttacacgtcga
cattgacgatcccgggagtgatgggtaaataggggttatgatacagttat
cccaattaagagtgaacaatccagtctctttcttcacttggactagatat
gaatctctatttgagtggtcatagtgaagtttgtatatgctcggctcaag
gagggcagatttaaaggtgtggccctgttggagtaggtgtgtcactgtgg
gtgtag
gaattccatctcagttccaaagaaccattcactgcaacctgaaccactgc
ctgaggttctgtggaagtctcacactggtcatagcttgggagaaagcaac
taagaaacctgttaggatgtggtaaaacatccagtgaattgcagatatgg
gaagaaagttaagttttaggtactatatttcaaattggtgtctatgacgg
gaacagctggctatcataatatttactaagaggtccctaagtggcagaaa
taaaaatccagataaaactacttgtttaaagactatgaggaaagacattg
taagagatcaagttttccatcctgcatcatccagaacgcagtatttgtgg
tgttcatcatgtctttactcttgttggctttctagaaatatgatggatac
ggcaaatacccaccttccacaaactcaaactgctgttgaatcataatatg
atctatctgtcacagtgaaaagaaaataaagaatttcagatatttcactc
aaccaaattaggaattcataattttcattatttaatatgatttataaata
gttaccagtgtttatcagtatcagattctcataattgtttgttgaataaa
atcatattaagagcagggagggggagggtataggggcctttgggaatagc
attttaaatgtaaatgaagaaaatatctaataagaaaagaaaaagaaaat
aacaagaaaatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92126518_92127573
seq2: B6Ng01-031I02.b_42_1097

seq1  GAATTCCTGTCCTAACTTCCTCTGATGATGGACTATGATCTAGAAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTAACTTCCTCTGATGATGGACTATGATCTAGAAGTGTA  50

seq1  CACTCAATAAATCCTTTCTTTCCCAACTTGCTTTTAGGTCAGGGTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAATAAATCCTTTCTTTCCCAACTTGCTTTTAGGTCAGGGTGTTTT  100

seq1  TTGTCATAGCAATAGAAACCCTAAGATGCTGTTTGAGAACTTTATTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAGCAATAGAAACCCTAAGATGCTGTTTGAGAACTTTATTCATG  150

seq1  AAAATAATGTGTTTGGATCAAATCCATGCCCACTCCATTTCCTCAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGTGTTTGGATCAAATCCATGCCCACTCCATTTCCTCAAACTT  200

seq1  TCCCCATACTCCTCTTTCTTCTCCCAACTTTATTTTTTTATCTATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATACTCCTCTTTCTTCTCCCAACTTTATTTTTTTATCTATTTTTT  250

seq1  ATTTATCTTATTTATTATTATTTTTGTTTGTATTTTTTTTCGAGACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTATTTATTATTATTTTTGTTTGTATTTTTTTTCGAGACAGGG  300

seq1  TTTCTTTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCT  350

seq1  GGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGCTCCCAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGCTCCCAACTT  400

seq1  TATATACTCGGGCGTTTGTTTGTTTGTTTGTTTTATTTTGTTTTTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCGGGCGTTTGTTTGTTTGTTTGTTTTATTTTGTTTTTTTTAC  450

seq1  AGATACTGAGCACACTCAGTGTTGTCAATATGTGCACAGGTATAGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGAGCACACTCAGTGTTGTCAATATGTGCACAGGTATAGACCAT  500

seq1  CCTGTGAACCATGAGCAAATGAGCAGGAATTGCATCCCTGAAGAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAACCATGAGCAAATGAGCAGGAATTGCATCCCTGAAGAAAATAA  550

seq1  ACTCTTCCTTCTCCAATAGTCATCAACCACCTTTAGCTCCTCAGCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTTCTCCAATAGTCATCAACCACCTTTAGCTCCTCAGCTAGAG  600

seq1  CTGTGAGCCTGTGATTCCTCACTGATCGCTGCTGGAATGGTGCCTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCTGTGATTCCTCACTGATCGCTGCTGGAATGGTGCCTGACTT  650

seq1  GATCTTGTTCAGGTCTTGTGTATACAGTCAAAGCCACTGTGGGTTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGTTCAGGTCTTGTGTATACAGTCAAAGCCACTGTGGGTTCATAT  700

seq1  ATGCTACGCTCCTGTCATACCCAGAAAAACAGTTTCACAGCTGTTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACGCTCCTGTCATACCCAGAAAAACAGTTTCACAGCTGTTCTCCA  750

seq1  CTATTTCTTGCCTTTGTACGTCTTTCTGCCTCTTCTTCTCTGATAATCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTGCCTTTGTACGTCTTTCTGCCTCTTCTTCTCTGATAATCGT  800

seq1  TGAGGCTTAAGAAATAGGGGTATCTTTTCCAAGAGTGGCTTACACGTCGA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTTAGAAATAGGGGTATCTTTTCCAAGAGTGGCTTACACGTCGA  850

seq1  CATTGACGATCCC-GGAGTGATGGTTAAATAGGGG-TATGATACAGTTAT  898
      ||||||||||||| |||||||||| |||||||||| ||||||||||||||
seq2  CATTGACGATCCCGGGAGTGATGGGTAAATAGGGGTTATGATACAGTTAT  900

seq1  CCCAATT-AGAGTGAACAATCCAGTCTCTTTCTTCACTTGGACTAGATAT  947
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAAGAGTGAACAATCCAGTCTCTTTCTTCACTTGGACTAGATAT  950

seq1  GAATCTCTATTTTGAGT-GTCATAGTGAAGGTTTGTATATGCTCGGCTCA  996
      ||||||||| ||||||| ||||||||||| ||||||||||||||||||||
seq2  GAATCTCTA-TTTGAGTGGTCATAGTGAA-GTTTGTATATGCTCGGCTCA  998

seq1  GGGAGTGGCAGGATTAGAAGGTGTGGCCCTGTTGGAGTAGGTGTGTCACT  1046
       |||| |||| ||||  |||||||||||||||||||||||||||||||||
seq2  AGGAG-GGCA-GATTTAAAGGTGTGGCCCTGTTGGAGTAGGTGTGTCACT  1046

seq1  GTGGGTGTAG  1056
      ||||||||||
seq2  GTGGGTGTAG  1056

seq1: chr9_92242381_92243095
seq2: B6Ng01-031I02.g_66_779 (reverse)

seq1  GATTTTTTCTTTTTCTTTTCTTTTTTCTTTTCTTATTAGATATTTTCTTC  50
      ||| ||||||| || ||||| |||||||||||||||||||||||||||||
seq2  GATATTTTCTTGTTATTTTC-TTTTTCTTTTCTTATTAGATATTTTCTTC  49

seq1  ATTTACATTTCAAATGCTATTCCCAAAGGCCCCTATACCCTCCCCCTCCC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTAAAATGCTATTCCCAAAGGCCCCTATACCCTCCCCCTCCC  99

seq1  TGCTCTTAATATGATTTTATTCAACAAACAATTATGAGAATCTGATACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAATATGATTTTATTCAACAAACAATTATGAGAATCTGATACTG  149

seq1  ATAAACACTGGTAACTATTTATAAATCATATTAAATAATGAAAATTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTGGTAACTATTTATAAATCATATTAAATAATGAAAATTATGA  199

seq1  ATTCCTAATTTGGTTGAGTGAAATATCTGAAATTCTTTATTTTCTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAATTTGGTTGAGTGAAATATCTGAAATTCTTTATTTTCTTTTCA  249

seq1  CTGTGACAGATAGATCATATTATGATTCAACAGCAGTTTGAGTTTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAGATAGATCATATTATGATTCAACAGCAGTTTGAGTTTGTGGA  299

seq1  AGGTGGGTATTTGCCGTATCCATCATATTTCTAGAAAGCCAACAAGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTATTTGCCGTATCCATCATATTTCTAGAAAGCCAACAAGAGTA  349

seq1  AAGACATGATGAACACCACAAATACTGCGTTCTGGATGATGCAGGATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGATGAACACCACAAATACTGCGTTCTGGATGATGCAGGATGGA  399

seq1  AAACTTGATCTCTTACAATGTCTTTCCTCATAGTCTTTAAACAAGTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGATCTCTTACAATGTCTTTCCTCATAGTCTTTAAACAAGTAGTT  449

seq1  TTATCTGGATTTTTATTTCTGCCACTTAGGGACCTCTTAGTAAATATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGATTTTTATTTCTGCCACTTAGGGACCTCTTAGTAAATATTAT  499

seq1  GATAGCCAGCTGTTCCCGTCATAGACACCAATTTGAAATATAGTACCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAGCTGTTCCCGTCATAGACACCAATTTGAAATATAGTACCTAA  549

seq1  AACTTAACTTTCTTCCCATATCTGCAATTCACTGGATGTTTTACCACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTTTCTTCCCATATCTGCAATTCACTGGATGTTTTACCACATC  599

seq1  CTAACAGGTTTCTTAGTTGCTTTCTCCCAAGCTATGACCAGTGTGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGTTTCTTAGTTGCTTTCTCCCAAGCTATGACCAGTGTGAGACT  649

seq1  TCCACAGAACCTCAGGCAGTGGTTCAGGTTGCAGTGAATGGTTCTTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAACCTCAGGCAGTGGTTCAGGTTGCAGTGAATGGTTCTTTGGA  699

seq1  ACTGAGATGGAATTC  715
      |||||||||||||||
seq2  ACTGAGATGGAATTC  714