BAC Information

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BAC

Clone NameB6Ng01-031I14
Chromosome9 (Build37)18 (Build37)
Map Location 15,121,733 - 15,121,80217,103,326 - 17,104,286
singlet/doubletsingletsinglet
Overlap gene5830418K08Rik
Upstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3
Downstream geneLOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I14.bB6Ng01-031I14.g
ACCDH861120DH861121
length969957
definitionDH861120|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I14, 5' end.DH861121|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,121,733 - 15,121,802)(17,103,326 - 17,104,286)
sequence
gaattcctgatctctccaatatttttaacatgaaggagtgttatattttg
tcaaatgatttttcagcatctaatgagatgatcatgtgggtttttttttt
ttgctttgagtttgtttataaagtggattgtattgatggatttctgtatg
ttgaaccagccctgcatccgtagaatgaagcctacttgagcaaggtgaat
gatcattttgatgtgttctttgatttggtttgcaagaattttattatgta
tttttgcatcgatattcataaggaaaattggtctgaagttctcttttttg
ttggctctttgtgtgatgtcaaagaaagtattaggtagtgaaccttctgt
ttctattttgtggaataacttgagaagtattggtattagatcatctttga
aggtatgatagaagtctgtactaaggccatctagccctggcatgttttgg
ttgggagtgttctaatgactgtttggatttcttaagggattatgggactg
tttagatgatttatctgatcctgatttaactttggtacctggtgtctctc
tagaaaatcatcatttcatctacattttccagttttgttgagtgtaggtt
tatctgatgatcatttttagaggcactctttccattcctgattttgttca
tttgttcattgtgttctttgtgccctctagtttgtatggctaaagggctt
atctgtctttgttgattttctgaaagaaccagctcctagaacatcaagtc
tctgaagaaaaaaaattggagaagacctcagaatatggaaagatatccca
ttttcatggagtggcagattaacatagtaaaattggtcattataccaaaa
agcactctagagattcataggagccccatcaaaataccatctcaattctt
aatggagatagaaagagcattggaaattcctttggaatagaaaaaacaga
aagcaacctatttcacata
gaattcaccccctctaatacacaaagtgcctttatttccatctctcagaa
gttgccatgtcttctttactactgctatgtcagataaggagttaacttgt
aggactttcatcaaactatattagaatctgcctttaatgacttctatatt
gatacttcaagaagtattaactgggacttactaattgaatcatgcctcca
ggtatcaaactgttattgagttataataaataagttatatgttttggatc
taatgtagggataggagaaaatattttatcccatgactcatttaaactaa
catgtagactagggatttattatccaataattaaatatcagaagtttcat
gtgtattttataaactatgagatttttaaaaaatcctctctcattttatt
tttcttctgaactaaaaataatgtactttagtaataacttgggttggtac
agggtccttattaacgctctggtgtcttgtcttagcttactcctgtaggc
atggaagcataaaatagttggttttaccagtagtattcctgaactggttt
ggaggacgacagagggggtgtatttccaaatgtgtgaatatgcctaatac
atttgtgtgtgtctgtatgtgtgtgtatgtgtgtgtacatatgcatgcat
tagtttgaagtttctctagataaacagaactgatgagatatctataatct
atctatctatctatctatctatctatctatctatcatctatctatctgtc
atctatctctctatagaatggctttcatttcctgctagtccagcaacctt
ttctaccaactgaaaatcaaaattcagaaaatttagtagttgttcagtcc
atggctggatgtttcactggtcttcaatatactctgggattgtgaaggaa
gtggctttactgcagtgaagaaacgaatttgctatcagcttgaggcaagc
aggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_15121733_15121802
seq2: B6Ng01-031I14.b_108_232 (reverse)

seq1  AAGTAGGCTTC---------ATCCCTGGATGGTTCAATATACAGAAATCC  41
      |||||||||||         || |  || |||||||| ||||||||||||
seq2  AAGTAGGCTTCATTCTACGGATGCAGGGCTGGTTCAACATACAGAAATCC  50

seq1  AT--------------------------------------AGAAGTA---  50
      ||                                      | ||  |   
seq2  ATCAATACAATCCACTTTATAAACAAACTCAAAGCAAAAAAAAAAAACCC  100

seq1  ----GAT-ATCTCATTAGATGCTGA  70
          ||| |||||||||||||||||
seq2  ACATGATCATCTCATTAGATGCTGA  125

seq1: chr18_17103326_17104286
seq2: B6Ng01-031I14.g_68_1024

seq1  GAATTCACCCCCTCTAATACACAAAGTGCCTTTATTTCCATCTCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCCTCTAATACACAAAGTGCCTTTATTTCCATCTCTCAGAA  50

seq1  GTTGCCATGTCTTCTTTACTACTGCTATGTCAGATAAGGAGTTAACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATGTCTTCTTTACTACTGCTATGTCAGATAAGGAGTTAACTTGT  100

seq1  AGGACTTTCATCAAACTATATTAGAATCTGCCTTTAATGACTTCTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTCATCAAACTATATTAGAATCTGCCTTTAATGACTTCTATATT  150

seq1  GATACTTCAAGAAGTATTAACTGGGACTTACTAATTGAATCATGCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCAAGAAGTATTAACTGGGACTTACTAATTGAATCATGCCTCCA  200

seq1  GGTATCAAACTGTTATTGAGTTATAATAAATAAGTTATATGTTTTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAAACTGTTATTGAGTTATAATAAATAAGTTATATGTTTTGGATC  250

seq1  TAATGTAGGGATAGGAGAAAATATTTTATCCCATGACTCATTTAAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGGGATAGGAGAAAATATTTTATCCCATGACTCATTTAAACTAA  300

seq1  CATGTAGACTAGGGATTTATTATCCAATAATTAAATATCAGAAGTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACTAGGGATTTATTATCCAATAATTAAATATCAGAAGTTTCAT  350

seq1  GTGTATTTTATAAACTATGAGATTTTTAAAAAATCCTCTCTCATTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTATAAACTATGAGATTTTTAAAAAATCCTCTCTCATTTTATT  400

seq1  TTTCTTCTGAACTAAAAATAATGTACTTTAGTAATAACTTGGGTTGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGAACTAAAAATAATGTACTTTAGTAATAACTTGGGTTGGTAC  450

seq1  AGGGTCCTTATTAACGCTCTGGTGTCTTGTCTTAGCTTACTCCTGTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTTATTAACGCTCTGGTGTCTTGTCTTAGCTTACTCCTGTAGGC  500

seq1  ATGGAAGCATAAAATAGTTGGTTTTACCAGTAGTATTCCTGAACTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCATAAAATAGTTGGTTTTACCAGTAGTATTCCTGAACTGGTTT  550

seq1  GGAGGACGACAGAGGGGGTGTATTTCCAAATGTGTGAATATGCCTAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACGACAGAGGGGGTGTATTTCCAAATGTGTGAATATGCCTAATAC  600

seq1  ATTTGTGTGTGTCTGTATGTGTGTGTATGTGTGTGTACATATGCATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGTGTCTGTATGTGTGTGTATGTGTGTGTACATATGCATGCAT  650

seq1  TAG-TTGAAG-TTCTCTAGATAAACAGAACTGATGAGATATCTATAATCT  698
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAAGTTTCTCTAGATAAACAGAACTGATGAGATATCTATAATCT  700

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGT  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATC-ATCTATCTATCTGT  749

seq1  CATCTATCTCTCTAGTAGAATGGCTTTCAGTTCCTGCTAGTCCAGCAATC  798
      |||||||||||||| |||||||||||||| |||||||||||||||||| |
seq2  CATCTATCTCTCTA-TAGAATGGCTTTCATTTCCTGCTAGTCCAGCAA-C  797

seq1  ATTTTCTACCAACTGAAAATTCAAATTCAG-AAATTTAGTAGTTGTTCAG  847
       |||||||||||||||||||  |||||||| |||||||||||||||||||
seq2  CTTTTCTACCAACTGAAAATCAAAATTCAGAAAATTTAGTAGTTGTTCAG  847

seq1  TCCATGGCTGGATGTTTCAGCTGGTCTTCAATATACTCT-GGAATCTTAA  896
      ||||||||||||||||||| ||||||||||||||||||| ||| | | ||
seq2  TCCATGGCTGGATGTTTCA-CTGGTCTTCAATATACTCTGGGATTGTGAA  896

seq1  GGAAGTAGGCTTTACTGCCAGTGAAGAAACGGATTTGCTATCAAGCATGA  946
      |||||| |||||||||| ||||||||||||| |||||||||| ||| |||
seq2  GGAAGT-GGCTTTACTG-CAGTGAAGAAACGAATTTGCTATC-AGCTTGA  943

seq1  GGGCAAGCAGGCAAA  961
       ||||||||||||||
seq2  -GGCAAGCAGGCAAA  957