BAC Information

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BAC

Clone NameB6Ng01-031J24
Chromosome9 (Build37)
Map Location 14,446,140 - 14,575,019
singlet/doubletdoublet
Overlap geneEG665374, Piwil4, Fut4, 1700012B09Rik
Upstream geneMaml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1
Downstream geneAnkrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031J24.bB6Ng01-031J24.g
ACCDH861184DH861185
length976696
definitionDH861184|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J24, 5' end.DH861185|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,446,140 - 14,447,114)(14,574,303 - 14,575,019)
sequence
gaattcctgaccctcccctcccattactgccttcgcctcagaagtgaata
ctgacaaaggcaaggcttggcatacaccctgcattcagaaacggccactt
ccttccttctccaccaagattggcttctccctggccctgtgacaccacaa
gggaaatctttctgttttgatgaccgcagtgagaccgtaaccactgacct
tctgtgatttgcctgcctcatgctgacaggctgggcttcccaatcttcct
gcctctcccctaaggaggaatgcaagcagggggtgggggaagtccccaac
ctctacctcaaactgctgagtgagcaaagctagaagaagaaatgctttgt
gggtaccctgaaaggccagttcaccctgtaccaaatcccagttgtggtag
attgtagcccaggccagaccaaactgtactgtgacactcagaggcaggcc
agtctcctgtcttcctcctcctcctcctcctcctcacgttttatgtgaca
gtgactacatacaattttgttcagaaaatgtgttctaggttgtaaaaata
ggtttaaaaacccactgggccaggtcctctgaagaatttgaaaggatgta
ggaagcaaaaaccaggggcgggactttcctttcggaaattccttatcacc
accaccaccaccatcaccacacacacacacacacacacacacacacacac
acatacacacccttcaatgaggaccttcttagcaggcttcctggagttag
tccctccctaagactgcctggagaaactcaggataatttaaggacctgcc
tgaaggtctgtgactcaagatggctgagccttactggcagagactgaatt
taatgaggtctccatgaagccaaagaccagagccctaaggccttcacaat
caactttccctggacttcaccaagaaatgcaaatcccaccctggggtatc
aaggcttcagctgccagcagcttgct
gaattcctgagcccaagggctggatatcatcctcaactgagttgagttgg
tcgataacagcattgctttttaaaggaaccatgaatacattaccccagag
gtatgtatctaatggtgttggggatagagcttggtggtataccacttgtc
taggacctccaggacctgggttcactccctcctacttgtctgagatgcag
ggtaagaaccactcacccctcacaaggcatccttcatttcccagatcata
aaaccaaggcgcagagcagggggaaggagatgaagtcagccagggctggc
aaaatacttaaaacccttcaacaatcacctccagcagtccaaacccccaa
atcactacctgggttagaatttcacatgcaatctttcttatgtcctctgc
ccatggaatatgcaaacaatattcaaatcagtaaagactgtcttgaggca
gttgtaactatatttctaacaggtttgtagcgtcctgtacctgatccttt
agcagctggtgagggagatggatgaaaacacagggccaaggaggagtgca
aacagcttccagggctgctcagagcctccttgattgcctctctggggact
aacaggagcatctggcggctcccgctgcttgcgccctcttctctctctct
ctctctctctctctctctctctctctctctctctctctgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_14446140_14447114
seq2: B6Ng01-031J24.b_48_1023

seq1  GAATTCCTGACCCTCCCCTCCCATTACTGCCTTCGCCTCAGAAGTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACCCTCCCCTCCCATTACTGCCTTCGCCTCAGAAGTGAATA  50

seq1  CTGACAAAGGCAAGGCTTGGCATACACCCTGCATTCAGAAACGGCCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAGGCAAGGCTTGGCATACACCCTGCATTCAGAAACGGCCACTT  100

seq1  CCTTCCTTCTCCACCAAGATTGGCTTCTCCCTGGCCCTGTGACACCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCTCCACCAAGATTGGCTTCTCCCTGGCCCTGTGACACCACAA  150

seq1  GGGAAATCTTTCTGTTTTGATGACCGCAGTGAGACCGTAACCACTGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTTTCTGTTTTGATGACCGCAGTGAGACCGTAACCACTGACCT  200

seq1  TCTGTGATTTGCCTGCCTCATGCTGACAGGCTGGGCTTCCCAATCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTTGCCTGCCTCATGCTGACAGGCTGGGCTTCCCAATCTTCCT  250

seq1  GCCTCTCCCCTAAGGAGGAATGCAAGCAGGGGGTGGGGGAAGTCCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCCCCTAAGGAGGAATGCAAGCAGGGGGTGGGGGAAGTCCCCAAC  300

seq1  CTCTACCTCAAACTGCTGAGTGAGCAAAGCTAGAAGAAGAAATGCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTCAAACTGCTGAGTGAGCAAAGCTAGAAGAAGAAATGCTTTGT  350

seq1  GGGTACCCTGAAAGGCCAGTTCACCCTGTACCAAATCCCAGTTGTGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCCTGAAAGGCCAGTTCACCCTGTACCAAATCCCAGTTGTGGTAG  400

seq1  ATTGTAGCCCAGGCCAGACCAAACTGTACTGTGACACTCAGAGGCAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGCCCAGGCCAGACCAAACTGTACTGTGACACTCAGAGGCAGGCC  450

seq1  AGTCTCCTGTCTTCCTCCTCCTCCTCCTCCTCCTCACGTTTTATGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTGTCTTCCTCCTCCTCCTCCTCCTCCTCACGTTTTATGTGACA  500

seq1  GTGACTACATACAATTTTGTTCAGAAAATGTGTTCTAGGTTGTAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTACATACAATTTTGTTCAGAAAATGTGTTCTAGGTTGTAAAAATA  550

seq1  GGTTTAAAAACCCACTGGGCCAGGTCCTCTGAAGAATTTGAAAGGATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAAACCCACTGGGCCAGGTCCTCTGAAGAATTTGAAAGGATGTA  600

seq1  GGAAGCAAAAACCAGGGGCGGGACTTTCC-TTCGGAAATTCCTTATCACC  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAAGCAAAAACCAGGGGCGGGACTTTCCTTTCGGAAATTCCTTATCACC  650

seq1  ACCACCACCACCATCACCACACACACACACACACACACACACACACACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCACCATCACCACACACACACACACACACACACACACACACAC  700

seq1  ACATACACACCCTTCATTGAGGACCTTCTTAGCAGGCTTCCTGGAGTTAG  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATACACACCCTTCAATGAGGACCTTCTTAGCAGGCTTCCTGGAGTTAG  750

seq1  TCCCTCCCTAAGAACTGCCTGGAGAAACTCAGGATAATTTAAGGACCTGC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTAAG-ACTGCCTGGAGAAACTCAGGATAATTTAAGGACCTGC  799

seq1  CTGAAGGTCTGTGACTCAGGATGGCTGAGCCTTACTGGCAGAGACTGAAT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  CTGAAGGTCTGTGACTCAAGATGGCTGAGCCTTACTGGCAGAGACTGAA-  848

seq1  TTTAATGAGGTCTCCATGAAGCC-AAGAACAGAGCCCTAAGGCCTTCACA  898
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  TTTAATGAGGTCTCCATGAAGCCAAAGACCAGAGCCCTAAGGCCTTCACA  898

seq1  ATTCAACTTTCCCTGGAACTTCA-CTAGAAATGCAAATCCCACCCT-GGG  946
      | |||||||||||||| |||||| | |||||||||||||||||||| |||
seq2  A-TCAACTTTCCCTGG-ACTTCACCAAGAAATGCAAATCCCACCCTGGGG  946

seq1  TATC-AGGCTTCAGCTGCCAGCAGCCTGCT  975
      |||| |||||||||||||||||||| ||||
seq2  TATCAAGGCTTCAGCTGCCAGCAGCTTGCT  976

seq1: chr9_14574303_14575019
seq2: B6Ng01-031J24.g_64_759 (reverse)

seq1  ACACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||                     |||||||||||||||||||||
seq2  ACACACAC---------------------AGAGAGAGAGAGAGAGAGAGA  29

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGCGCAAGCAGCGGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGCGCAAGCAGCGGGAGC  79

seq1  CGCCAGATGCTCCTGTTAGTCCCCAGAGAGGCAATCAAGGAGGCTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGATGCTCCTGTTAGTCCCCAGAGAGGCAATCAAGGAGGCTCTGAG  129

seq1  CAGCCCTGGAAGCTGTTTGCACTCCTCCTTGGCCCTGTGTTTTCATCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGAAGCTGTTTGCACTCCTCCTTGGCCCTGTGTTTTCATCCAT  179

seq1  CTCCCTCACCAGCTGCTAAAGGATCAGGTACAGGACGCTACAAACCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACCAGCTGCTAAAGGATCAGGTACAGGACGCTACAAACCTGTT  229

seq1  AGAAATATAGTTACAACTGCCTCAAGACAGTCTTTACTGATTTGAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAGTTACAACTGCCTCAAGACAGTCTTTACTGATTTGAATATT  279

seq1  GTTTGCATATTCCATGGGCAGAGGACATAAGAAAGATTGCATGTGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATATTCCATGGGCAGAGGACATAAGAAAGATTGCATGTGAAATT  329

seq1  CTAACCCAGGTAGTGATTTGGGGGTTTGGACTGCTGGAGGTGATTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCAGGTAGTGATTTGGGGGTTTGGACTGCTGGAGGTGATTGTTGA  379

seq1  AGGGTTTTAAGTATTTTGCCAGCCCTGGCTGACTTCATCTCCTTCCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTAAGTATTTTGCCAGCCCTGGCTGACTTCATCTCCTTCCCCCT  429

seq1  GCTCTGCGCCTTGGTTTTATGATCTGGGAAATGAAGGATGCCTTGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCGCCTTGGTTTTATGATCTGGGAAATGAAGGATGCCTTGTGAGG  479

seq1  GGTGAGTGGTTCTTACCCTGCATCTCAGACAAGTAGGAGGGAGTGAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGTTCTTACCCTGCATCTCAGACAAGTAGGAGGGAGTGAACCC  529

seq1  AGGTCCTGGAGGTCCTAGACAAGTGGTATACCACCAAGCTCTATCCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGGAGGTCCTAGACAAGTGGTATACCACCAAGCTCTATCCCCAA  579

seq1  CACCATTAGATACATACCTCTGGGGTAATGTATTCATGGTTCCTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAGATACATACCTCTGGGGTAATGTATTCATGGTTCCTTTAAAA  629

seq1  AGCAATGCTGTTATCGACCAACTCAACTCAGTTGAGGATGATATCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCTGTTATCGACCAACTCAACTCAGTTGAGGATGATATCCAGCC  679

seq1  CTTGGGCTCAGGAATTC  717
      |||||||||||||||||
seq2  CTTGGGCTCAGGAATTC  696