BAC Information

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BAC

Clone NameB6Ng01-031M10
Chromosome9 (Build37)
Map Location 57,530,967 - 57,640,970
singlet/doubletdoublet
Overlap geneCyp1a2, Cyp1a1, Edc3, Clk3, Arid3b
Upstream geneLingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk
Downstream geneLOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M10.bB6Ng01-031M10.g
ACCDH861297DH861298
length1,103953
definitionDH861297|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M10, 5' end.DH861298|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,639,842 - 57,640,970)(57,530,967 - 57,531,931)
sequence
gaattccaaaggtcttggtggccttctcctgcttagagcttccagagcct
ccaaacaagtttccatagctataaggggtcccacccacctcctcagcccc
agtgggctagcccaacttgctgctgtgtctcaggttttctggccactgtc
tcttcagtttaatgctttttccctttcaagcaatctagacactactcacc
accaaaaccttcctgggctatacttcccgctcctctctccagaaccatta
tgatgtccccaacagcagaggtacacctgtctcagaacatttatgtcatt
ctagcaaagagactgcgtgcatgcttgtccttcagcagtctgtgaacctt
tggtggcaggacaattgtctgggcttcccctgacatctggcatggtagga
gagtaagcccagcagtcatgccctgtttcattgaaccaagctactcctta
gcccatactgcttttcctcccaacccaggtgtgctgtttgcccagaaacc
agtggtccacctcattgcgggctctactccccagagcattggcagcagcg
ccagcagcagcaacagcagcagctctcactgctcaccaagtcctacctca
tcccggggtacccccagtgcagagccctccaccagctggtccctctgatg
agcagcactcagcacccactccctactctcctgccaagattaaaggagat
tgatgcacagaatttacctcacctcatggagcccacaacagacaccatct
ggccagatgttaaatttggaagagtccgtctggccaagctccattcagtt
ctgctgtattctaggggcaggacagagtagcgttgtccaatcagggattg
tcttggagaactgggtggggcatctgggcatccagctttcccaggttccc
aaccacctcccaacccagagtagtatatcgacatctgtaggcgactgggg
ctggagctttcactcccttccccttattattcccttctgctgcttctgct
tcacccagatcaccagacttttagtctgcccagtccccagtgttaatcca
tttggggctctaggagtcaggacttgtcttctggctcttgtgctgaacat
ggg
gaattctttccctacctctttactccaggcaactgtcctcagaaaaagcc
tggttgaaactgtttaattaaaggtaatgggctagtgagatggctcagtg
gtaaaagcacttgctgaaagcctgatgacttgagtttgatccctggaatt
gatgtggtggaaagaaagaactgattcctgaaagttgtctctgagctcca
cacataagctgtggtgttcagacagacagacagaaagacagaaagacaga
cagagatacacacacacacacacatacatataaacacacacacggaggtg
caaaggtccagggctgagaattaagaagcaaaaccttagacctctcagat
ttccttcacttcccacagggtccccgtttctccatcataatagcatttag
gaaatagcagcaggtctcatgatctggaaagacacacagacgtacctgaa
gggcaggggctggagactggcagagttgtgggagtcagtccaggacttct
gggttccgacgaggggccttttataacaccacccactctggactggccca
ggtgcccgggtcacttgatatcatagctggatgctgcacaaagctgaaag
gatcaattcttggcttcaagccatggctcctcagttccacctttcacttg
gggtcagaagtggcttggggtccatggagataaatattcatggagataaa
aaagtatgacattttaggggccaaggtatatgtctttgaaagaatacact
tctttcaaagacagggcagggttcaggtgtaaaaattacgtggatgaaca
gatataacctcttctccacccatgagaatggacgggcctagccccaggcc
aaccagggcagctcatgctctcacggagcagatagggagtgcattgtact
cgtgactttctgaattacatctacctgacaaagaagggaagaaggaaggg
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_57639842_57640970
seq2: B6Ng01-031M10.b_44_1146 (reverse)

seq1  CCCATGCTCAGCCAACAAGAGCAAGGAAGACAAGCTCCTGACTCCTAGAG  50
      |||||| |||||  |||||||| | ||||||||| |||||||||||||||
seq2  CCCATGTTCAGC--ACAAGAGCCA-GAAGACAAG-TCCTGACTCCTAGAG  46

seq1  CCCCAAATGGGATTTAAACACTGGGGGACTGGGCAGACTAAAAGTCTGGT  100
      |||||||| |||||  |||||| |||||||||||||||||||||||||||
seq2  CCCCAAAT-GGATT--AACACT-GGGGACTGGGCAGACTAAAAGTCTGGT  92

seq1  GATCCTGGGGTGAAGGCAGAAGGCAGCAGAAGGGAAATAAATTAAGGGGG  150
      ||||   ||||||| |||||| |||||||||||| |||||  ||| ||||
seq2  GATC--TGGGTGAA-GCAGAA-GCAGCAGAAGGG-AATAA--TAA-GGGG  134

seq1  AAGGGAAGTGAAAAGCCTCCAGCCCCAAGTCGCCTTACAGATTGTCGATA  200
      ||||| |||||||   |||||||||| ||||||| |||||| ||||||||
seq2  AAGGG-AGTGAAA--GCTCCAGCCCC-AGTCGCC-TACAGA-TGTCGATA  178

seq1  TACTACTCTGGGTTGGGAGGTGGTTGGGGAACCCTGGGAAAGCTGGATGC  250
      ||||||||||||||||||||||||||||  | ||||||||||||||||||
seq2  TACTACTCTGGGTTGGGAGGTGGTTGGG--AACCTGGGAAAGCTGGATGC  226

seq1  CCAGATGCCCCACCCAGTTCTCCAAGACAATCCCTGATTGGACAACGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCCCACCCAGTTCTCCAAGACAATCCCTGATTGGACAACGCTA  276

seq1  CTCTGTCCTGCCCCCTAGAATACAGCAGAACCTGAATGGAGCTTGGCCAG  350
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CTCTGTCCTG-CCCCTAGAATACAGCAGAA-CTGAATGGAGCTTGGCCAG  324

seq1  ACGGACTCTTCCAAATTTAACATCTGGCCAGATGGTGTCTGTTGTGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTCTTCCAAATTTAACATCTGGCCAGATGGTGTCTGTTGTGGGCT  374

seq1  CCATGAGGTGAGGTAAATTCTGTGCATCAATCTCCTTTAATCTTGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGTGAGGTAAATTCTGTGCATCAATCTCCTTTAATCTTGGCAGG  424

seq1  AGAGTAGGGAGTGGGTGCTGAGTGCTGCTCATCAGAGGGACCAGCTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGGAGTGGGTGCTGAGTGCTGCTCATCAGAGGGACCAGCTGGTG  474

seq1  GAGGGCTCTGCACTGGGGGTACCCCGGGATGAGGTAGGACTTGGTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTCTGCACTGGGGGTACCCCGGGATGAGGTAGGACTTGGTGAGCA  524

seq1  GTGAGAGCTGCTGCTGTTGCTGCTGCTGGCGCTGCTGCCAATGCTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCTGCTGCTGTTGCTGCTGCTGGCGCTGCTGCCAATGCTCTGGG  574

seq1  GAGTAGAGCCCGCAATGAGGTGGACCACTGGTTTCTGGGCAAACAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGCCCGCAATGAGGTGGACCACTGGTTTCTGGGCAAACAGCACA  624

seq1  CCTGGGTTGGGAGGAAAAGCAGTATGGGCTAAGGAGTAGCTTGGTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTGGGAGGAAAAGCAGTATGGGCTAAGGAGTAGCTTGGTTCAAT  674

seq1  GAAACAGGGCATGACTGCTGGGCTTACTCTCCTACCATGCCAGATGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGGCATGACTGCTGGGCTTACTCTCCTACCATGCCAGATGTCAG  724

seq1  GGGAAGCCCAGACAATTGTCCTGCCACCAAAGGTTCACAGACTGCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCCAGACAATTGTCCTGCCACCAAAGGTTCACAGACTGCTGAAG  774

seq1  GACAAGCATGCACGCAGTCTCTTTGCTAGAATGACATAAATGTTCTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCATGCACGCAGTCTCTTTGCTAGAATGACATAAATGTTCTGAGA  824

seq1  CAGGTGTACCTCTGCTGTTGGGGACATCATAATGGTTCTGGAGAGAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTACCTCTGCTGTTGGGGACATCATAATGGTTCTGGAGAGAGGAG  874

seq1  CGGGAAGTATAGCCCAGGAAGGTTTTGGTGGTGAGTAGTGTCTAGATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGTATAGCCCAGGAAGGTTTTGGTGGTGAGTAGTGTCTAGATTGC  924

seq1  TTGAAAGGGAAAAAGCATTAAACTGAAGAGACAGTGGCCAGAAAACCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGGAAAAAGCATTAAACTGAAGAGACAGTGGCCAGAAAACCTGA  974

seq1  GACACAGCAGCAAGTTGGGCTAGCCCACTGGGGCTGAGGAGGTGGGTGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAGCAAGTTGGGCTAGCCCACTGGGGCTGAGGAGGTGGGTGGG  1024

seq1  ACCCCTTATAGCTATGGAAACTTGTTTGGAGGCTCTGGAAGCTCTAAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTATAGCTATGGAAACTTGTTTGGAGGCTCTGGAAGCTCTAAGCA  1074

seq1  GGAGAAGGCCACCAAGACCTTTGGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  GGAGAAGGCCACCAAGACCTTTGGAATTC  1103

seq1: chr9_57530967_57531931
seq2: B6Ng01-031M10.g_67_1019

seq1  GAATTCTTTCCCTACCTCTTTACTCCAGGCAACTGTCCTCAGAAAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTACCTCTTTACTCCAGGCAACTGTCCTCAGAAAAAGCC  50

seq1  TGGTTGAAACTGTTTAATTAAAGGTAATGGGCTAGTGAGATGGCTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAACTGTTTAATTAAAGGTAATGGGCTAGTGAGATGGCTCAGTG  100

seq1  GTAAAAGCACTTGCTGAAAGCCTGATGACTTGAGTTTGATCCCTGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCACTTGCTGAAAGCCTGATGACTTGAGTTTGATCCCTGGAATT  150

seq1  GATGTGGTGGAAAGAAAGAACTGATTCCTGAAAGTTGTCTCTGAGCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTGGAAAGAAAGAACTGATTCCTGAAAGTTGTCTCTGAGCTCCA  200

seq1  CACATAAGCTGTGGTGTTCAGACAGACAGACAGAAAGACAGAAAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGCTGTGGTGTTCAGACAGACAGACAGAAAGACAGAAAGACAGA  250

seq1  CAGAGATACACACACACACACACATACATATAAACACACACACGGAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATACACACACACACACACATACATATAAACACACACACGGAGGTG  300

seq1  CAAAGGTCCAGGGCTGAGAATTAAGAAGCAAAACCTTAGACCTCTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCCAGGGCTGAGAATTAAGAAGCAAAACCTTAGACCTCTCAGAT  350

seq1  TTCCTTCACTTCCCACAGGGTCCCCGTTTCTCCATCATAATAGCATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCACTTCCCACAGGGTCCCCGTTTCTCCATCATAATAGCATTTAG  400

seq1  GAAATAGCAGCAGGTCTCATGATCTGGAAAGACACACAGACGTACCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCAGCAGGTCTCATGATCTGGAAAGACACACAGACGTACCTGAA  450

seq1  GGGCAGGGGCTGGAGACTGGCAGAGTTGTGGGAGTCAGTCCAGGACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGCTGGAGACTGGCAGAGTTGTGGGAGTCAGTCCAGGACTTCT  500

seq1  GGGTTCCGACGAGGGGCCTTTTATAACACCACCCACTCTGGACTGGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCGACGAGGGGCCTTTTATAACACCACCCACTCTGGACTGGCCCA  550

seq1  GGTGCCCGGGTCACTTGATATCATAGCTGGATGCTGCACAAAGCTGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCGGGTCACTTGATATCATAGCTGGATGCTGCACAAAGCTGAAAG  600

seq1  GATCAATTCTTGGCTTCAAGCCATGGCTCCTCAGTTCCACCTTTCACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTCTTGGCTTCAAGCCATGGCTCCTCAGTTCCACCTTTCACTTG  650

seq1  GGGTCAGAAGTGGCTTGGGGTCCATGGAGATAAATATTCATGGAGATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAAGTGGCTTGGGGTCCATGGAGATAAATATTCATGGAGATAAA  700

seq1  AAAGTATGACATTTTAGGGGCCAAGGTATATGTCTTTGAAAGAATACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGACATTTTAGGGGCCAAGGTATATGTCTTTGAAAGAATACACT  750

seq1  TCTTTCAAAGACAGGGCAGGGTTCAGGGTGTAAAAATTAGGTGGATGAAC  800
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TCTTTCAAAGACAGGGCAGGGTTCA-GGTGTAAAAATTACGTGGATGAAC  799

seq1  AGATATAACCTCTTCTCCACCCATGAGAATGGACGGGCCTAGCCCCCAGG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATATAACCTCTTCTCCACCCATGAGAATGGACGGGCCTAG-CCCCAGG  848

seq1  CCAACCAGGGCAGCTCATGCTCTCCACGGAGGCAGATAGGGAGGTGCATT  900
      ||||||||||||||||||||||| |||||| ||||||||||| |||||||
seq2  CCAACCAGGGCAGCTCATGCTCT-CACGGA-GCAGATAGGGA-GTGCATT  895

seq1  GTACTCGTGACTTTTCTGGAATTAACAATCTACCTGACAAAAGGAAGGGA  950
      ||||||||||| ||||| ||||||   ||||||||||||||  |||||||
seq2  GTACTCGTGAC-TTTCT-GAATTA--CATCTACCTGACAAA--GAAGGGA  939

seq1  AGGAAGGAAGGGAGG  965
      | |||||||||||||
seq2  A-GAAGGAAGGGAGG  953