BAC Information

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BAC

Clone NameB6Ng01-032D11
Chromosome9 (Build37)
Map Location 63,585,497 - 63,721,244
singlet/doubletdoublet
Overlap geneSmad3, LOC100040009
Upstream geneItga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik
Downstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032D11.bB6Ng01-032D11.g
ACCDH861617DH861618
length1,174816
definitionDH861617|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D11, 5' end.DH861618|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,585,497 - 63,586,694)(63,720,474 - 63,721,244)
sequence
gaattcttagtgcgtgtgctttatttttcgtagccaaccaccatcacttt
ccacccagaacacacatgcccgtcacaccaaaccacagccttacataagc
acctgcagctgtggctctcagtcccagttacacactgcagtcacctagag
aaagccagaaagtaccgccgttctcacctccacctgcggcaattctgaac
caagtggtctgaggatccaaacgtttgtaggcagccgggatggttaatac
tgattaccaacgtcgcaggagctagaatcacctaggagagcactgggcac
atctgtgagagagcctctagattcagtttactgaaatgggaaggactacc
ctaactgtgtgtgggcaacaccatcccagaggctaggaacccaggctgaa
tcaagagggagccaggagaacacaagcatacaagcatacaagcattcagc
tcatgctcgctcgcgctctctctctctctctctctctctctctgcttcct
cgttacagatgccctcgttacccattgcctcacgctgctgtcaccatttc
tcccaggccatgacagactgcgccctcaaaccacaaagcagaacagaccc
ttctttccttaagttgctgcttgctgatcaagcattttgtcacagcgatg
agaattttactaaaaacagaagccaaggcaaaaaaaaaaaaaaaaaaaaa
accttccacagtggctcagactaccaaacgtgagtgacgaggctccaaga
gtctcaactccacacaatactttgaaccccaaacttctttccattctgtc
ttcaactatgggccccactttctagccccagagagattatatcgtgattt
tgaaactctcagaatgaataactgtcatttctttggatgcaggtgcaaga
atttgacttgaagacagaggaattttaaagccctactacgccttccattt
actgacaggaagacagggggttgagtgattccctagggtaacaaagctgc
acacagagccaattctaagtctcttgtcttgaatattcaaggaggaggtg
gctaagagtttagaagaacagggactggttgggcctaccggatgctttaa
ggtcaccctcagcttcctatggagacttctcttccttccttaaaagcctg
aagcaaaaggcatgcaattttgaa
gaattccaggagaaggaaaatgagtggaggtaaacatttagtgagtgatg
gctaacatgtctagacctgagaagagacataaactagcttgcagataaag
ctagggagtcttacataagttaaataaatttaatttatttgtggatttaa
aagggtgaaactggacaaagctaaagtcaaagatcttcaaaattgccaga
gtgggggaacaaacagatggcaatgtatgcagaagaaaacatggttaggt
tagctgctggctcacatagcaacaagtggacgactgaagatcaccgtaat
ccagctccaagggatcggaaaccctcttctgtctcccaagggtgcctgca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacatataattagaagtaaaaataaatatttgtttttaaaaagaaact
agaatatttgtgcatatgttgggcaaaaaacaagtgtcaatctagaactc
tgtaggcatttttcaaagctgttgtaaaaatgaaatatttcggggctgga
gagatggctcagtggttgagagcactgattgctcttctagaggtcctgag
ttcaattcccagccaccacatggtggctaacaaaccatctgtagtgggaa
cctataccctcttctggtgtctctgaagagagcaacagtgtacatacata
cataaataaatcttttaaaaaatgaaatattttcagatggaactaaagaa
taaattgccactctaagtacattagtagaggcaaaaaccaactgctggat
ggagggaaggggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_63585497_63586694
seq2: B6Ng01-032D11.b_41_1214

seq1  GAATTCTTAGTGCGTGTGCTTTATTTTT-GTAGCCAACCACCATCACTTT  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTTAGTGCGTGTGCTTTATTTTTCGTAGCCAACCACCATCACTTT  50

seq1  CCACCCAGAACACACATGCCCGTCACACCAAACCACAGCCTTACATAAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGAACACACATGCCCGTCACACCAAACCACAGCCTTACATAAGC  100

seq1  ACCTGCAGCTGTGGCTCTCAGTCCCAGTTACACACTGCAGTCACCTAGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGCTGTGGCTCTCAGTCCCAGTTACACACTGCAGTCACCTAGAG  150

seq1  AAAGCCAGAAAGTACCGCCGTTCTCACCTCCACCTGCGGCAATTCTGAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGAAAGTACCGCCGTTCTCACCTCCACCTGCGGCAATTCTGAAC  200

seq1  CAAGTGGTCTGAGGATCCAAACGTTTGTAGGCAGCCGGGATGGTTAATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTCTGAGGATCCAAACGTTTGTAGGCAGCCGGGATGGTTAATAC  250

seq1  TGATTACCAACGTCGCAGGAGCTAGAATCACCTAGGAGAGCACTGGGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCAACGTCGCAGGAGCTAGAATCACCTAGGAGAGCACTGGGCAC  300

seq1  ATCTGTGAGAGAGCCTCTAGATTCAGTTTACTGAAATGGGAAGGACTACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGAGAGCCTCTAGATTCAGTTTACTGAAATGGGAAGGACTACC  350

seq1  CTAACTGTGTGTGGGCAACACCATCCCAGAGGCTAGGAACCCAGGCTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTGTGTGGGCAACACCATCCCAGAGGCTAGGAACCCAGGCTGAA  400

seq1  TCAAGAGGGAGCCAGGAGAACACAAGCATACAAGCATACAAGCATTCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGGAGCCAGGAGAACACAAGCATACAAGCATACAAGCATTCAGC  450

seq1  TCATGCTCGCTCGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCGCTCGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTCCT  500

seq1  CGTTACAGATGCCCTCGTTACCCATTGCCTCACGCTGCTGTCACCATTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAGATGCCCTCGTTACCCATTGCCTCACGCTGCTGTCACCATTTC  550

seq1  TCCCAGGCCATGACAGACTGCGCCCTCAAACCACAAAGCAGAACAGACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCATGACAGACTGCGCCCTCAAACCACAAAGCAGAACAGACCC  600

seq1  TTCTTTCCTTAAGTTGCTGCTTGCTGATCAAGCATTTTGTCACAGCGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTTAAGTTGCTGCTTGCTGATCAAGCATTTTGTCACAGCGATG  650

seq1  AGAATTTTACT-AAAACAGAAGCCAAGGCAAAAAAAAAAAAAAAAAAAAA  698
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTACTAAAAACAGAAGCCAAGGCAAAAAAAAAAAAAAAAAAAAA  700

seq1  ACCTTCCACAGTGGCTCAGACTACCAAACGTGAGTGACGAGGCTCCAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCACAGTGGCTCAGACTACCAAACGTGAGTGACGAGGCTCCAAGA  750

seq1  GTCTCAACTCCACACAATACTTTGAACCCCAAACTTCTTTCCATTCTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACTCCACACAATACTTTGAACCCCAAACTTCTTTCCATTCTGTC  800

seq1  TTCAACTATGGGCCCCACTTTCTAGCCCCAGAGAGATTATATCGTGATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCAACTATGGGCCCCACTTTCTAGCCCCAGAGAGATTATATCGTGATTT  850

seq1  TGAAACTCTCAGAATGAATAACTGTCATTTCTTTGAATGCAAGTGCAAGA  898
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TGAAACTCTCAGAATGAATAACTGTCATTTCTTTGGATGCAGGTGCAAGA  900

seq1  ATTTGACCTTGAAGACAGAGGAAATTTTAAAGCCCTACTACGCCTTCAAT  948
      |||||| |||||||||||||| ||||||||||||||||||||||||| ||
seq2  ATTTGA-CTTGAAGACAGAGG-AATTTTAAAGCCCTACTACGCCTTCCAT  948

seq1  TTACTGACAGGAAGACCAGGGGTTGAAGTGACTCACTCAGGGTCACAAAG  998
      ||||||||||||||||  ||||||| ||||| || || ||||| ||||||
seq2  TTACTGACAGGAAGACAGGGGGTTG-AGTGATTCCCT-AGGGTAACAAAG  996

seq1  CTGCCACACAAGAGCCCAATCTCTAAGTCTC-TGTCCTGAATATCACAAG  1047
      ||| ||||| |||| ||||| |||||||||| |||| |||||||  ||| 
seq2  CTG-CACAC-AGAG-CCAAT-TCTAAGTCTCTTGTCTTGAATAT-TCAA-  1040

seq1  GGAGGAGGGTGGCAGAAGAGTGTAGAAGGAACAGGTGAGCTGGTTGTGCA  1097
      |||||| ||||||  |||||| ||||| ||||||| || ||||||| |  
seq2  GGAGGA-GGTGGC-TAAGAGTTTAGAA-GAACAGG-GA-CTGGTTGGG--  1083

seq1  CTTACTGGATGCCTTTAGAGGTCACCCTCCAGCTACCTAATGGAAAGACT  1147
      | ||| ||||| ||||| |||||||||| ||||| ||| ||||  |||||
seq2  CCTACCGGATG-CTTTA-AGGTCACCCT-CAGCTTCCT-ATGG--AGACT  1127

seq1  TCATCTCCTTCACTTAAGATGCCTGAAGGCAAAAGGCAGTGAGCTTTTGA  1197
      ||   |||||| ||||| | ||||||| |||||||||| ||   ||||||
seq2  TCTCTTCCTTC-CTTAA-AAGCCTGAA-GCAAAAGGCA-TGCAATTTTGA  1173

seq1  A  1198
      |
seq2  A  1174

seq1: chr9_63720474_63721244
seq2: B6Ng01-032D11.g_67_840 (reverse)

seq1  TAATGTACTTAGAGTGGCAATTTATTCTTTAGTTCCATCTG-AAATATTT  49
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAATGTACTTAGAGTGGCAATTTATTCTTTAGTTCCATCTGAAAATATTT  50

seq1  CATTTTTT-AAAGATTTATTTATGTATGTATGTACACTGTTGCTCTCTTC  98
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAAAGATTTATTTATGTATGTATGTACACTGTTGCTCTCTTC  100

seq1  AGAGACACCAGAAGAGGGTATAGGTTCCCACTACAGATGG-TTGTTAGCC  147
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAGACACCAGAAGAGGGTATAGGTTCCCACTACAGATGGTTTGTTAGCC  150

seq1  ACCATGTGGTGGCTGGGAATTGAACTCAGGACCTCTAGAAGAGCAATCAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTGGCTGGGAATTGAACTCAGGACCTCTAGAAGAGCAATCAG  200

seq1  TGCTCTCAACCACTGAGCCATCTCTCCAGCCCCGAAATATTTCATTTTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAACCACTGAGCCATCTCTCCAGCCCCGAAATATTTCATTTTTA  250

seq1  CAACAGCTTTGAAAAATGCCTACAGAGTTCTAGATTGACACTTGTTTTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTTTGAAAAATGCCTACAGAGTTCTAGATTGACACTTGTTTTTT  300

seq1  GCCCAACATATGCACAAATATTCTAGTTTCTTTTTAAAAACAAATATTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACATATGCACAAATATTCTAGTTTCTTTTTAAAAACAAATATTTA  350

seq1  TTTTTACTTCTAATTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTCTAATTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGCAGGCACCCTTGGGAGACAGAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGCAGGCACCCTTGGGAGACAGAAGA  450

seq1  GGGTTTCCGATCCCTTGGAGCTGGATTACGGTGATCTTCAGTCGTCCACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCGATCCCTTGGAGCTGGATTACGGTGATCTTCAGTCGTCCACT  500

seq1  TGTTGCTATGTGAGCCAGCAGCTAACCTAACCATGTTTTCTTCTGCATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTATGTGAGCCAGCAGCTAACCTAACCATGTTTTCTTCTGCATAC  550

seq1  ATTGCCATCTGTTTGTTCCCCCACTCTGGCAATTTTGAAGATCTTTGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATCTGTTTGTTCCCCCACTCTGGCAATTTTGAAGATCTTTGACT  600

seq1  TTAGCTTTGTCCAGTTTCACCCTTTTAAATCCACAAATAAATTAAATTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTGTCCAGTTTCACCCTTTTAAATCCACAAATAAATTAAATTTA  650

seq1  TTTAACTTATGTAAGACTCCCTAGCTTTATCTGCAAGCTAGTTTATGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTATGTAAGACTCCCTAGCTTTATCTGCAAGCTAGTTTATGTCT  700

seq1  CTTCTCAGGTCTAGACATGTTAGCCATCACTCACTAAATGTTTACCTCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGTCTAGACATGTTAGCCATCACTCACTAAATGTTTACCTCCA  750

seq1  CTCATTTTCCTTCTCCTGGAATTC  771
      ||||||||||||||||||||||||
seq2  CTCATTTTCCTTCTCCTGGAATTC  774