BAC Information

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BAC

Clone NameB6Ng01-032K17
Chromosome9 (Build37)
Map Location 54,186,084 - 54,308,624
singlet/doubletdoublet
Overlap geneGldn, Dmxl2
Upstream geneKdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064
Downstream gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032K17.bB6Ng01-032K17.g
ACCDH861930DH861931
length1,107940
definitionDH861930|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K17, 5' end.DH861931|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,186,084 - 54,187,200)(54,307,681 - 54,308,624)
sequence
gaattctttctacagacatgtttactccactctaacttgcttttcgaaaa
atgtttcagatttgaatttgggaaagagacacctcagactctgaagctgg
aaaatgctttgtattttgatcgaaaatacctctttgcaaattccaagact
tacttcaacatagcagtggatgagaagggcatctggattatctacgcttc
aagtgtggatggctcaagcatccttgtagcacagctggatgagaggacat
tctccgtgacacagcacatcaacaccacataccccaaatccaaggctggc
aatgccttcatagcccgagggatcctctatgtcacagacaccaaagatac
gagggtcacgtttgcctttgatttgttaggaggaaagcaaatcaatgcaa
actttgatttcagaatgtcccagtctgttcttgccatgctgtcatacaac
atgagagatcagcatttatactcgtgggaagatggccatctgatgctcta
tcctgtgcagtttctgtcagcggcatcaagtcagcggtagggttccctcg
gctgtctgctccctctctatactccacattgtctagggtttggtcaagcc
caacagaaagctagccggtaaaggatacccaggcactcggagcgtaagcc
catgccacgggctcttgcacaagcggcgagtccgctctaagccaggttgt
tgaaatagctacagattagaaatggatgtggaagagatctggtgacccag
tatccctcctcaaactcagcaagttagctctcccccgaccgtagcgtccc
cataggtaatacgaaacatctgagtatgactgacatttcctcttcctaga
tgaaattctgtgattcttgcctgattatatattagaatgctttctggatt
cttttttttttttttctccacatgtaagtgagcttacttgcagcttgagg
ggtgggcctttcgtgatgacttatttgtatttagggaagtgcactggctc
ctatggctctaaggtttatttaatcataattgttattttcctgaatatca
cttaccactacagatgatcattgttttccacgtcctaaacacaattcaga
ttaataa
gaattcagcttctacatctgtcattagcttctgagtagatttttaaagct
ctccgtctccgtttttctctttgttgaatgagggtagaaatagtaccatc
tcagagagcagtgaggcagatgtgcttgtatgcatgaagtgtttatattt
agtacagaccacaacacatacttgcccagaccacattagctggtcttgtg
aatagtaacattagtaaaggaaggttctagaaaggatatttttgcttgta
agtagggagtgcccgctgaagaacagtaatgagctataaataatgtacat
ggtgggaagaatgtaatatacaatttatacaggacagaatggtatatgat
agggagataacatagtaaatttatctgtctttggagtccaaattaaagat
ttatttgatccattcaaaaagatactgaatcctgaatgaattccaaatgc
cagggactgaagtcctcaaccttgttaagggtgcacctccttttgaatct
ttgttttattcagtgtcctctttactaacatgttgtagttataatagtag
acagcttacatttctgtttaaaaaaggttattttgtttaagttatttatg
tctcttgtaataatttaaaaattatttttaaaacttttggcaaggttaaa
tttcatgtaagcaactttaaaaaatacttgtattttttattttatacata
tgagtgttttgcctgtatgcatgcctgtgcatcaaatgcttgcagtgccc
acagacatcagaagagagcaacagatccctttgaattagagtacaccctt
tgaatatgagccaccattgagggactgtgctctggtttttgtggaagagc
agcaagtgcttagcaactaaacccctttttagtctcaagacttctttctt
tttgtttccgtgttatgtggttgcctggcaccacatcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54186084_54187200
seq2: B6Ng01-032K17.b_46_1152

seq1  GAATTCTTTCTACAGACATGTTTACTCCACTCTAACTTGCTTTTCGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTACAGACATGTTTACTCCACTCTAACTTGCTTTTCGAAAA  50

seq1  ATGTTTCAGATTTGAATTTGGGAAAGAGACACCTCAGACTCTGAAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAGATTTGAATTTGGGAAAGAGACACCTCAGACTCTGAAGCTGG  100

seq1  AAAATGCTTTGTATTTTGATCGAAAATACCTCTTTGCAAATTCCAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTTGTATTTTGATCGAAAATACCTCTTTGCAAATTCCAAGACT  150

seq1  TACTTCAACATAGCAGTGGATGAGAAGGGCATCTGGATTATCTACGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAACATAGCAGTGGATGAGAAGGGCATCTGGATTATCTACGCTTC  200

seq1  AAGTGTGGATGGCTCAAGCATCCTTGTAGCACAGCTGGATGAGAGGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGATGGCTCAAGCATCCTTGTAGCACAGCTGGATGAGAGGACAT  250

seq1  TCTCCGTGACACAGCACATCAACACCACATACCCCAAATCCAAGGCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTGACACAGCACATCAACACCACATACCCCAAATCCAAGGCTGGC  300

seq1  AATGCCTTCATAGCCCGAGGGATCCTCTATGTCACAGACACCAAAGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCATAGCCCGAGGGATCCTCTATGTCACAGACACCAAAGATAC  350

seq1  GAGGGTCACGTTTGCCTTTGATTTGTTAGGAGGAAAGCAAATCAATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCACGTTTGCCTTTGATTTGTTAGGAGGAAAGCAAATCAATGCAA  400

seq1  ACTTTGATTTCAGAATGTCCCAGTCTGTTCTTGCCATGCTGTCATACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATTTCAGAATGTCCCAGTCTGTTCTTGCCATGCTGTCATACAAC  450

seq1  ATGAGAGATCAGCATTTATACTCGTGGGAAGATGGCCATCTGATGCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGATCAGCATTTATACTCGTGGGAAGATGGCCATCTGATGCTCTA  500

seq1  TCCTGTGCAGTTTCTGTCAGCGGCATCAAGTCAGCGGTAGGGTTCCCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCAGTTTCTGTCAGCGGCATCAAGTCAGCGGTAGGGTTCCCTCG  550

seq1  GCTGTCTGCTCCCTCTCTATACTCCACATTGTCTAGGGTTTGGTCAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCTCCCTCTCTATACTCCACATTGTCTAGGGTTTGGTCAAGCC  600

seq1  CAACAGAAAGCTAGCCGGTAAAGGATACCCAGGCACTCGGAGCGTAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAGCTAGCCGGTAAAGGATACCCAGGCACTCGGAGCGTAAGCC  650

seq1  CATGCCACGGGCTCTTGCACAAGCGGCGAGTCCGCTCTAAGCCAGGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACGGGCTCTTGCACAAGCGGCGAGTCCGCTCTAAGCCAGGTTGT  700

seq1  TGAAATAGCTACAGATTAGAAATGGATGTGGAAGAGATCTGGTGACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGCTACAGATTAGAAATGGATGTGGAAGAGATCTGGTGACCCAG  750

seq1  TATCCCTCCTCAAACTCAGCAAGTTAGCTCTCCCCCGACCGTAGCGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCCTCAAACTCAGCAAGTTAGCTCTCCCCCGACCGTAGCGTCCC  800

seq1  CATAGGTAATACGAAACATCTGAGTATGACTGACATTTCCTCTTCCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTAATACGAAACATCTGAGTATGACTGACATTTCCTCTTCCTAGA  850

seq1  TGAAATTCTGTGATTCTTGCCTGATTATATATTAGAATGCTTTCTGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTGTGATTCTTGCCTGATTATATATTAGAATGCTTTCTGGATT  900

seq1  C-TTTTTTTTTTTTTCTCCACATGTAAGTGAGCTTACTTGCAGCTTGAGG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTCTCCACATGTAAGTGAGCTTACTTGCAGCTTGAGG  950

seq1  GGTGGGCCTTTCAGTGATGACTTATTTGGTATTTAGGGAAGGTGCACTGG  999
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  GGTGGGCCTTTC-GTGATGACTTATTT-GTATTTAGGGAA-GTGCACTGG  997

seq1  CTCTTATGGCTTCTAAGGTTTTATTTTATTCATAATTTGTTATTTTCTCT  1049
      ||| |||||| ||||||||||   |||| |||||| ||||||||||| ||
seq2  CTCCTATGGC-TCTAAGGTTT--ATTTAATCATAA-TTGTTATTTTC-CT  1042

seq1  GAATATTCACCTACCACTACAGAATGATCATTGTTTT-CAGCTCCTAAAC  1098
      ||||| |||| ||||||||||| |||||||||||||| ||  ||||||||
seq2  GAATA-TCACTTACCACTACAG-ATGATCATTGTTTTCCACGTCCTAAAC  1090

seq1  ACAAATCCAAGATTAATAA  1117
      |||| ||  ||||||||||
seq2  ACAATTC--AGATTAATAA  1107

seq1: chr9_54307681_54308624
seq2: B6Ng01-032K17.g_67_1005 (reverse)

seq1  AAGATGTGGTGCACAGGCAAACACATATACACGGAAAACAAAAAGAAAGA  50
      |||||||||||| ||||||| |||||| |||||| |||||||||||||||
seq2  AAGATGTGGTGC-CAGGCAACCACATA-ACACGG-AAACAAAAAGAAAGA  47

seq1  AGTCTTGAGACTAAAAAGGGGGTTTAGTGGCTAAGGCACTTGCTGCTCTT  100
      ||||||||||||||||| |||||||||| ||||| |||||||||||||||
seq2  AGTCTTGAGACTAAAAA-GGGGTTTAGTTGCTAA-GCACTTGCTGCTCTT  95

seq1  CCAC-AAAACCAGAGCTCAGTCCCTCAATTGGTGGCTCATATTCAAAGGG  149
      |||| ||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CCACAAAAACCAGAGCACAGTCCCTCAA-TGGTGGCTCATATTCAAAGGG  144

seq1  TGTACTCTAATTCAAAGGGATCTGTTGCTCTCTTCTGATGTCTGTGGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTAATTCAAAGGGATCTGTTGCTCTCTTCTGATGTCTGTGGGCA  194

seq1  CTGCAAGCATTTGATGCACAGGCATGCATACAGGCAAAACACTCATATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCATTTGATGCACAGGCATGCATACAGGCAAAACACTCATATGT  244

seq1  ATAAAATAAAAAATACAAGTATTTTTTAAAGTTGCTTACATGAAATTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAAAATACAAGTATTTTTTAAAGTTGCTTACATGAAATTTAA  294

seq1  CCTTGCCAAAAGTTTTAAAAATAATTTTTAAATTATTACAAGAGACATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAAAAGTTTTAAAAATAATTTTTAAATTATTACAAGAGACATAA  344

seq1  ATAACTTAAACAAAATAACCTTTTTTAAACAGAAATGTAAGCTGTCTACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAACAAAATAACCTTTTTTAAACAGAAATGTAAGCTGTCTACT  394

seq1  ATTATAACTACAACATGTTAGTAAAGAGGACACTGAATAAAACAAAGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACTACAACATGTTAGTAAAGAGGACACTGAATAAAACAAAGATT  444

seq1  CAAAAGGAGGTGCACCCTTAACAAGGTTGAGGACTTCAGTCCCTGGCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGGTGCACCCTTAACAAGGTTGAGGACTTCAGTCCCTGGCATT  494

seq1  TGGAATTCATTCAGGATTCAGTATCTTTTTGAATGGATCAAATAAATCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCATTCAGGATTCAGTATCTTTTTGAATGGATCAAATAAATCTT  544

seq1  TAATTTGGACTCCAAAGACAGATAAATTTACTATGTTATCTCCCTATCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGACTCCAAAGACAGATAAATTTACTATGTTATCTCCCTATCAT  594

seq1  ATACCATTCTGTCCTGTATAAATTGTATATTACATTCTTCCCACCATGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTCTGTCCTGTATAAATTGTATATTACATTCTTCCCACCATGTA  644

seq1  CATTATTTATAGCTCATTACTGTTCTTCAGCGGGCACTCCCTACTTACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTATAGCTCATTACTGTTCTTCAGCGGGCACTCCCTACTTACAA  694

seq1  GCAAAAATATCCTTTCTAGAACCTTCCTTTACTAATGTTACTATTCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATATCCTTTCTAGAACCTTCCTTTACTAATGTTACTATTCACAA  744

seq1  GACCAGCTAATGTGGTCTGGGCAAGTATGTGTTGTGGTCTGTACTAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTAATGTGGTCTGGGCAAGTATGTGTTGTGGTCTGTACTAAATA  794

seq1  TAAACACTTCATGCATACAAGCACATCTGCCTCACTGCTCTCTGAGATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTTCATGCATACAAGCACATCTGCCTCACTGCTCTCTGAGATGG  844

seq1  TACTATTTCTACCCTCATTCAACAAAGAGAAAAACGGAGACGGAGAGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTCTACCCTCATTCAACAAAGAGAAAAACGGAGACGGAGAGCTT  894

seq1  TAAAAATCTACTCAGAAGCTAATGACAGATGTAGAAGCTGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTACTCAGAAGCTAATGACAGATGTAGAAGCTGAATTC  939