BAC Information

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BAC

Clone NameB6Ng01-033C22
Chromosome9 (Build37)
Map Location 116,050,287 - 116,182,000
singlet/doubletdoublet
Overlap geneTgfbr2, LOC100043817, LOC100043819
Upstream geneOsbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829
Downstream geneD730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033C22.bB6Ng01-033C22.g
ACCDH862310DH862311
length119604
definitionDH862310|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C22, 5' end.DH862311|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,181,882 - 116,182,000)(116,050,287 - 116,050,890)
sequence
tctcggcagccttattcccacaaaagaaaatgcttgccaaaatactctct
ctctctctctctctctctctctctctctctctctctctctccctctccct
ccccccctccctccccccc
gaattctctacaatccatgctgttgggctggggcaggggcaggggcaggg
gcaggggcaggggcaggggcaggggcaggggcaggggcaggggcagggga
gcagctgcctgtgaatgtacaccaggcttatggagcgagttctccggata
gagtttggctgcgagggtttcatcaacttccattaatagctcatgagtct
tagtgctcactacagctctttcaagaaaaaaaagaacataggcacaaatt
tatattcacccagcaagtaaattaagggattaagtaataattatctgtat
ttcttaaagattaatccaatagctacttcgggggaaacttggctgtccct
gaagagtttaaaaatatatatttggcaaggatgtttttaaaaagccgttt
atagataaaacaaactaggtgaatggaaaggcaatcatttttttttgtag
tcccaaacatcaaataactaaacgattttcatctccctccttcctcctta
gccaagcagctccaaaacctcccagtacagattctgtgtcactgggaaat
gaagggatttagattctctaggcacttaaggaggatctatctccccctcc
ctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116181882_116182000
seq2: B6Ng01-033C22.b_49_167 (reverse)

seq1  GGGGGGGAGGGAGGGAGGGAGGGAGGGGGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  GGGGGGGAGGGAGGGGGGGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGTATTTTGGCAAGCATTTTCTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGTATTTTGGCAAGCATTTTCTTTTGT  100

seq1  GGGAATAAGGCTGCCGAGA  119
      |||||||||||||||||||
seq2  GGGAATAAGGCTGCCGAGA  119

seq1: chr9_116050287_116050890
seq2: B6Ng01-033C22.g_66_669

seq1  GAATTCTCTACAATCCATGCTGTTGGGCTGGGGCAGGGGCAGGGGCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAATCCATGCTGTTGGGCTGGGGCAGGGGCAGGGGCAGGG  50

seq1  GCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGA  100

seq1  GCAGCTGCCTGTGAATGTACACCAGGCTTATGGAGCGAGTTCTCCGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCCTGTGAATGTACACCAGGCTTATGGAGCGAGTTCTCCGGATA  150

seq1  GAGTTTGGCTGCGAGGGTTTCATCAACTTCCATTAATAGCTCATGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGCTGCGAGGGTTTCATCAACTTCCATTAATAGCTCATGAGTCT  200

seq1  TAGTGCTCACTACAGCTCTTTCAAGAAAAAAAAGAACATAGGCACAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTCACTACAGCTCTTTCAAGAAAAAAAAGAACATAGGCACAAATT  250

seq1  TATATTCACCCAGCAAGTAAATTAAGGGATTAAGTAATAATTATCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCACCCAGCAAGTAAATTAAGGGATTAAGTAATAATTATCTGTAT  300

seq1  TTCTTAAAGATTAATCCAATAGCTACTTCGGGGGAAACTTGGCTGTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGATTAATCCAATAGCTACTTCGGGGGAAACTTGGCTGTCCCT  350

seq1  GAAGAGTTTAAAAATATATATTTGGCAAGGATGTTTTTAAAAAGCCGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTTAAAAATATATATTTGGCAAGGATGTTTTTAAAAAGCCGTTT  400

seq1  ATAGATAAAACAAACTAGGTGAATGGAAAGGCAATCATTTTTTTTTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAAACAAACTAGGTGAATGGAAAGGCAATCATTTTTTTTTGTAG  450

seq1  TCCCAAACATCAAATAACTAAACGATTTTCATCTCCCTCCTTCCTCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACATCAAATAACTAAACGATTTTCATCTCCCTCCTTCCTCCTTA  500

seq1  GCCAAGCAGCTCCAAAACCTCCCAGTACAGATTCTGTGTCACTGGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCAGCTCCAAAACCTCCCAGTACAGATTCTGTGTCACTGGGAAAT  550

seq1  GAAGGGATTTAGATTCTCTAGGCACTTAAGGAGGATCTATCTCCCCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATTTAGATTCTCTAGGCACTTAAGGAGGATCTATCTCCCCCTCC  600

seq1  CTCT  604
      ||||
seq2  CTCT  604