BAC Information

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BAC

Clone NameB6Ng01-033G04
Chromosome9 (Build37)
Map Location 76,014,876 - 76,109,004
singlet/doubletdoublet
Overlap geneGfral, Hcrtr2
Upstream geneMyo5a, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
Downstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033G04.bB6Ng01-033G04.g
ACCDH862448DH862449
length147822
definitionDH862448|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G04, 5' end.DH862449|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,014,876 - 76,015,022)(76,108,026 - 76,109,004)
sequence
gaattccacaggtaactgccatgcacacaacaacatagagtagttctcct
gtgaagaaaaggttagacattaactcaacatgtttgttgtgagcataaaa
aagagaaagagctattaacatgtgttctggtggggtgtgggggtagg
gaattcattagcagaagaagctagcactctatgcaggcatagattttgaa
actggtggttttgaaatttgtatgtgtcagacaggtggagggcacagtgt
gcagtaattgatattctttccataaaaagcagctgagtgggcccgcacag
cattaaagaaggaaggttccacagtgtggtaaggaggccaagcaggtcag
atttcagcgtgatgttcagtggccattgagagtaataaagagagaattgg
agcctagaatttaaatatactctattattacctcttcgttttcaaaaatg
gagacaaactaagtggtgaaggacacaattatcacttggaacttactact
tttcatactttgtaagttcttaacaggtccaataaatgttttgtctcaat
tttctcacacacaaatatgcctgatgtcttcctgtaagattttcccaaat
tttagcaaaatataagtacatgaacgatttggctaagtattcgataaaag
ttggggttgagttaaggtggaatagtagtaggctagtttgtttgtttatt
tgcttttctttccaatagttaatattttcttctcctggttgtccacaatg
caaatttgtgggacgacatggatcaaggtcatgaatgaggtgattataat
tgttctttgaagattactaattctaattctcctcattcaactacaactca
tcaacttttttattttaatttttggctgagttgtattatgtagccctaac
tgacttggacctcagtgtgtaaatcaggctatcttaactcatagagtttg
gctgcctctgcctctgcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76014876_76015022
seq2: B6Ng01-033G04.b_41_187

seq1  GAATTCCACAGGTAACTGCCATGCACACAACAACATAGAGTAGTTCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGTAACTGCCATGCACACAACAACATAGAGTAGTTCTCCT  50

seq1  GTGAAGAAAAGGTTAGACATTAACTCAACATGTTTGTTGTGAGCATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAAAGGTTAGACATTAACTCAACATGTTTGTTGTGAGCATAAAA  100

seq1  AAGAGAAAGAGCTATTAACATGTGTTCTGGTGGGGTGTGGGGGTAGG  147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGAGCTATTAACATGTGTTCTGGTGGGGTGTGGGGGTAGG  147

seq1: chr9_76108026_76109004
seq2: B6Ng01-033G04.g_66_887 (reverse)

seq1  CAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGGCAGAGGCAGAGGCAGAGGCAGGCAGATCTCTATGAGTTTAAGAT  200
            ||||||||||||||||||||| || | ||||||||| |||||| 
seq2  ------CAGAGGCAGAGGCAGAGGCAGCCA-AACTCTATGAG-TTAAGA-  41

seq1  TAGCCTGATTTACACACTGAGGTCCAAGTCAGTTAGGGCTACATAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGATTTACACACTGAGGTCCAAGTCAGTTAGGGCTACATAATACA  91

seq1  ACTCAGCC-AAAATTAAAAT-AAAAAGTTGATGAGTTGTAGTTGAATGAG  298
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCAGCCAAAAATTAAAATAAAAAAGTTGATGAGTTGTAGTTGAATGAG  141

seq1  GAGAATTAGAATTAGTAATCTTCAAAGAACAATTATAATCACCTCATTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAGAATTAGTAATCTTCAAAGAACAATTATAATCACCTCATTCA  191

seq1  TGACCTTGATCCATGTCGTCCCACAAATTTGCATTGTGGACAACCAGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGATCCATGTCGTCCCACAAATTTGCATTGTGGACAACCAGGAG  241

seq1  AAGAAAATATTAACTATTGGAAAGAAAAGCAAATAAACAAACAAACTAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATTAACTATTGGAAAGAAAAGCAAATAAACAAACAAACTAGC  291

seq1  CTACTACTATTCCACCTTAACTCAACCCCAACTTTTATCGAATACTTAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTATTCCACCTTAACTCAACCCCAACTTTTATCGAATACTTAGC  341

seq1  CAAATCGTTCATGTACTTATATTTTGCTAAAATTTGGGAAAATCTTACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGTTCATGTACTTATATTTTGCTAAAATTTGGGAAAATCTTACAG  391

seq1  GAAGACATCAGGCATATTTGTGTGTGAGAAAATTGAGACAAAACATTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATCAGGCATATTTGTGTGTGAGAAAATTGAGACAAAACATTTAT  441

seq1  TGGACCTGTTAAGAACTTACAAAGTATGAAAAGTAGTAAGTTCCAAGTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGTTAAGAACTTACAAAGTATGAAAAGTAGTAAGTTCCAAGTGA  491

seq1  TAATTGTGTCCTTCACCACTTAGTTTGTCTCCATTTTTGAAAACGAAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGTCCTTCACCACTTAGTTTGTCTCCATTTTTGAAAACGAAGAG  541

seq1  GTAATAATAGAGTATATTTAAATTCTAGGCTCCAATTCTCTCTTTATTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATAGAGTATATTTAAATTCTAGGCTCCAATTCTCTCTTTATTAC  591

seq1  TCTCAATGGCCACTGAACATCACGCTGAAATCTGACCTGCTTGGCCTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGGCCACTGAACATCACGCTGAAATCTGACCTGCTTGGCCTCCT  641

seq1  TACCACACTGTGGAACCTTCCTTCTTTAATGCTGTGCGGGCCCACTCAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACTGTGGAACCTTCCTTCTTTAATGCTGTGCGGGCCCACTCAGC  691

seq1  TGCTTTTTATGGAAAGAATATCAATTACTGCACACTGTGCCCTCCACCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTATGGAAAGAATATCAATTACTGCACACTGTGCCCTCCACCTG  741

seq1  TCTGACACATACAAATTTCAAAACCACCAGTTTCAAAATCTATGCCTGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACATACAAATTTCAAAACCACCAGTTTCAAAATCTATGCCTGCA  791

seq1  TAGAGTGCTAGCTTCTTCTGCTAATGAATTC  979
      |||||||||||||||||||||||||||||||
seq2  TAGAGTGCTAGCTTCTTCTGCTAATGAATTC  822