BAC Information

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BAC

Clone NameB6Ng01-033N04
Chromosome9 (Build37)
Map Location 20,890,276 - 21,033,348
singlet/doubletdoublet
Overlap geneRaver1, Tyk2, Cdc37, Pde4a
Upstream geneOlfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik
Downstream geneKeap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033N04.bB6Ng01-033N04.g
ACCDH862766DH862767
length963336
definitionDH862766|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N04, 5' end.DH862767|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,890,276 - 20,891,244)(21,033,013 - 21,033,348)
sequence
gaattccaacccccacaccacagaactcagcatggtgaagcatgatccag
tacttgagaagtagaactatacaatctaaaattcacactcatcctcaact
acatacgaaggtcaggatcagtatgggctatctcaaaaaacaaaataaca
aacatgagtcaggcaaagtgcctcctaccagtaaccctgacaaccatgag
ggtaaggcaaaaagatggtgtttctaggctagcctgggctacatgatcta
agtaatgagtatatgactgataagggtgtgagatgagccgaggatttgca
ctctgacctttgaaccattcccacacctacgcccttaaccaccatatccc
agagcctctcccaagagccccattcaaagctatgacagctgcttcaaatg
acccaagacctacctgacagaaggtgggggtatagaccactgacagagcc
cggcgcagggcatccacatcactgaagccaggtggcaggtggtccacaca
gaggcatcgagagtgcaacaatgcaggggtcagctgcccagcatctgtcc
agtgcacatacagtgtgcgtgggcccagtggcttgcccagcaagtcagac
ttggccctggctgctgagtctttcttcatgtactctgcaaagccatatcc
tttagagtggccagtgcgctcactgtacactaggaagcagcgctccaggc
tgccaaagggccgcaccagctcttcaaattgtgcctgtgtcagactaggt
ggtaggttggccacgcacagcagagcatcggtaggctgcaactgaactga
cagctcccgctctcgaaggcggctctggtggaaggtgttgatggcagctt
cagcctgctcccattcagcagagtcacaaaagctgtaaggtaggagagaa
gctagggtccgaatgacctgttttctacctgggcctctaaaccagtgtga
tagaacatctact
cagcccaagctacatgatgagctcatgccacagatcgactccatccacac
attaggctagagaggtggcctcttggctcttcccaaggacccgagcctgg
ctcataaccagagctgtctgtgaggcacctgtccacaaatgtatggacag
acaaacacacagctatatatacctaaaaagtctctcaaaaagctggaaat
gaagctcaatagagcccttgcagatgggggctgggggggcggcggcagaa
actcggatctctgtgaattgggaccagcctggtcttcatagacctggggg
gagagagagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20890276_20891244
seq2: B6Ng01-033N04.b_45_1007

seq1  GAATTCCAACCCCCACACCACAGAACTCAGCATGGTGAAGCATGATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCCCCACACCACAGAACTCAGCATGGTGAAGCATGATCCAG  50

seq1  TACTTGAGAAGTAGAACTATACAATCTAAAATTCACACTCATCCTCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGAAGTAGAACTATACAATCTAAAATTCACACTCATCCTCAACT  100

seq1  ACATACGAAGGTCAGGATCAGTATGGGCTATCTCAAAAAACAAAATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGAAGGTCAGGATCAGTATGGGCTATCTCAAAAAACAAAATAACA  150

seq1  AACATGAGTCAGGCAAAGTGCCTCCTACCAGTAACCCTGACAACCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGTCAGGCAAAGTGCCTCCTACCAGTAACCCTGACAACCATGAG  200

seq1  GGTAAGGCAAAAAGATGGTGTTTCTAGGCTAGCCTGGGCTACATGATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGCAAAAAGATGGTGTTTCTAGGCTAGCCTGGGCTACATGATCTA  250

seq1  AGTAATGAGTATATGACTGATAAGGGTGTGAGATGAGCCGAGGATTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGAGTATATGACTGATAAGGGTGTGAGATGAGCCGAGGATTTGCA  300

seq1  CTCTGACCTTTGAACCATTCCCACACCTACGCCCTTAACCACCATATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTTTGAACCATTCCCACACCTACGCCCTTAACCACCATATCCC  350

seq1  AGAGCCTCTCCCAAGAGCCCCATTCAAAGCTATGACAGCTGCTTCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCTCCCAAGAGCCCCATTCAAAGCTATGACAGCTGCTTCAAATG  400

seq1  ACCCAAGACCTACCTGACAGAAGGTGGGGGTATAGACCACTGACAGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGACCTACCTGACAGAAGGTGGGGGTATAGACCACTGACAGAGCC  450

seq1  CGGCGCAGGGCATCCACATCACTGAAGCCAGGTGGCAGGTGGTCCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCAGGGCATCCACATCACTGAAGCCAGGTGGCAGGTGGTCCACACA  500

seq1  GAGGCATCGAGAGTGCAACAATGCAGGGGTCAGCTGCCCAGCATCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATCGAGAGTGCAACAATGCAGGGGTCAGCTGCCCAGCATCTGTCC  550

seq1  AGTGCACATACAGTGTGCGTGGGCCCAGTGGCTTGCCCAGCAAGTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATACAGTGTGCGTGGGCCCAGTGGCTTGCCCAGCAAGTCAGAC  600

seq1  TTGGCCCTGGCTGCTGAGTCTTTCTTCATGTACTCTGCAAAGCCATATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGGCTGCTGAGTCTTTCTTCATGTACTCTGCAAAGCCATATCC  650

seq1  TTTAGAGTGGCCAGTGCGCTCACTGTACACTAGGAAGCAGCGCTCCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTGGCCAGTGCGCTCACTGTACACTAGGAAGCAGCGCTCCAGGC  700

seq1  TGCCAAAGGGCCGCACCAGCTCTTCAAATTGTGCCTGTGTCAGACTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGGGCCGCACCAGCTCTTCAAATTGTGCCTGTGTCAGACTAGGT  750

seq1  GGTAGGTTGGCCACGCACAGCAGAGCATCGGTAGGCTGCAACTGAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTGGCCACGCACAGCAGAGCATCGGTAGGCTGCAACTGAACTGA  800

seq1  CAGCTCCCGCTCTCGAAGGCGGCTCTGGTGGAAGGTGTTGATGGCAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCGCTCTCGAAGGCGGCTCTGGTGGAAGGTGTTGATGGCAGCTT  850

seq1  CAGCCTGCTCCCCATTCAGCAGAGTCACAAAAGCTGTAGGGTAGGAGAGA  900
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  CAGCCTGCT-CCCATTCAGCAGAGTCACAAAAGCTGTAAGGTAGGAGAGA  899

seq1  AGCTAGGGTCAGAGTGACCTGTCTTTCTACCCTGGGCCCTCTAAACCAGG  950
      |||||||||| || |||||||| |||||| |||||| ||||||||||| |
seq2  AGCTAGGGTCCGAATGACCTGT-TTTCTA-CCTGGG-CCTCTAAACCA-G  945

seq1  TGTGAATAGAACATCTACT  969
      |||| ||||||||||||||
seq2  TGTG-ATAGAACATCTACT  963

seq1: chr9_21033013_21033348
seq2: B6Ng01-033N04.g_73_408 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCAGGTCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCAGGTCTATG  50

seq1  AAGACCAGGCTGGTCCCAATTCACAGAGATCCGAGTTTCTGCCGCCGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGCTGGTCCCAATTCACAGAGATCCGAGTTTCTGCCGCCGCCC  100

seq1  CCCCAGCCCCCATCTGCAAGGGCTCTATTGAGCTTCATTTCCAGCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCCCATCTGCAAGGGCTCTATTGAGCTTCATTTCCAGCTTTTT  150

seq1  GAGAGACTTTTTAGGTATATATAGCTGTGTGTTTGTCTGTCCATACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTTTTTAGGTATATATAGCTGTGTGTTTGTCTGTCCATACATTT  200

seq1  GTGGACAGGTGCCTCACAGACAGCTCTGGTTATGAGCCAGGCTCGGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGGTGCCTCACAGACAGCTCTGGTTATGAGCCAGGCTCGGGTCC  250

seq1  TTGGGAAGAGCCAAGAGGCCACCTCTCTAGCCTAATGTGTGGATGGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAGCCAAGAGGCCACCTCTCTAGCCTAATGTGTGGATGGAGTC  300

seq1  GATCTGTGGCATGAGCTCATCATGTAGCTTGGGCTG  336
      ||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGGCATGAGCTCATCATGTAGCTTGGGCTG  336