BAC Information

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BAC

Clone NameB6Ng01-034A08
Chromosome9 (Build37)
Map Location 25,161,789 - 25,162,350
singlet/doubletsinglet
Overlap genenone
Upstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7
Downstream geneEG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A08.bB6Ng01-034A08.g
ACCDH862900DH862901
length5561,172
definitionDH862900|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A08, 5' end.DH862901|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aagccccaggatccatgtattagaaggaacagaccaacaagccttccttt
gtgtcctttgctctcattatatgtgctatatacagtccatgcgtgggtgt
ggctgtgtgaaacacacatctactcatacatatacaatgtatagataata
tttaaacaagaaacacaatattttataattattaaaacaattaaacaatt
gctttagatttcaaaagaaccagttatcttgtggtgaggccatgaaaatc
tctctgctttctgcaagctttttctgaaacacaccaggtctgagagtccc
tagaactcagttgttctggctgcaagataccagattttgcttgtgttagc
atgggatactttttatctgtggaaaaggccctgttcataatcttactaag
acagcagctcatgaggtttgtctgtgacatgtctgagctcttacatgaat
ggcagaccgtagatatgtcttcctagggttggggtaggcacatgagagca
cacatatggttgtgcaatgacagatgagtgggttttgttgttgttgttgt
tgtttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttacttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactaaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggtcccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaattggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctcaccctat
aggtggaacaacattatgaacttacagtaccctgagctctgactctagct
gcatatgttatcaaaaaatgctagtcgccatcaatgaagagaggccaatg
accgcagactttgtggtgccgttacaagtgtaacgcccatggccaaatga
ggtcagatagtatgtgctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25161789_25162350
seq2: B6Ng01-034A08.b_45_606 (reverse)

seq1  AAAACAACAACAACAACAACAAAACCCACTCATCTGTCATTGCACAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAACAACAAAACCCACTCATCTGTCATTGCACAACCA  50

seq1  TATGTGTGCTCTCATGTGCCTACCCCAACCCTAGGAAGACATATCTACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCTCTCATGTGCCTACCCCAACCCTAGGAAGACATATCTACGG  100

seq1  TCTGCCATTCATGTAAGAGCTCAGACATGTCACAGACAAACCTCATGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATTCATGTAAGAGCTCAGACATGTCACAGACAAACCTCATGAGC  150

seq1  TGCTGTCTTAGTAAGATTATGAACAGGGCCTTTTCCACAGATAAAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTAGTAAGATTATGAACAGGGCCTTTTCCACAGATAAAAAGTA  200

seq1  TCCCATGCTAACACAAGCAAAATCTGGTATCTTGCAGCCAGAACAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTAACACAAGCAAAATCTGGTATCTTGCAGCCAGAACAACTGA  250

seq1  GTTCTAGGGACTCTCAGACCTGGTGTGTTTCAGAAAAAGCTTGCAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGGACTCTCAGACCTGGTGTGTTTCAGAAAAAGCTTGCAGAAAG  300

seq1  CAGAGAGATTTTCATGGCCTCACCACAAGATAACTGGTTCTTTTGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATTTTCATGGCCTCACCACAAGATAACTGGTTCTTTTGAAATC  350

seq1  TAAAGCAATTGTTTAATTGTTTTAATAATTATAAAATATTGTGTTTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATTGTTTAATTGTTTTAATAATTATAAAATATTGTGTTTCTTG  400

seq1  TTTAAATATTATCTATACATTGTATATGTATGAGTAGATGTGTGTTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTATCTATACATTGTATATGTATGAGTAGATGTGTGTTTCAC  450

seq1  ACAGCCACACCCACGCATGGACTGTATATAGCACATATAATGAGAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACACCCACGCATGGACTGTATATAGCACATATAATGAGAGCAAA  500

seq1  GGACACAAAGGAAGGCTTGTTGGTCTGTTCCTTCTAATACATGGATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAAGGAAGGCTTGTTGGTCTGTTCCTTCTAATACATGGATCCTG  550

seq1  GGGCTTGAATTC  562
      ||||||||||||
seq2  GGGCTTGAATTC  562