BAC Information

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BAC

Clone NameB6Ng01-034E20
Chromosome9 (Build37)
Map Location 52,235,844 - 52,379,091
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034E20.bB6Ng01-034E20.g
ACCDH863096DH863097
length923409
definitionDH863096|Mus musculus domesticus DNA, BAC clone: B6Ng01-034E20, 5' end.DH863097|Mus musculus domesticus DNA, BAC clone: B6Ng01-034E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,378,161 - 52,379,091)(52,235,844 - 52,236,257)
sequence
gaattctgaagctcagaacagttatagatctagcttgaaactacatacca
aaatctgaaatgtcgggactccctaatgttctttgaatttagacctacgg
ttatacatcattcccactctaagttactactctattggacggagaaattc
tgtaatgtgaaagatatatttccacgtggccaaaataaacaggtgtaagg
tgtttttagttggagtaccattccaaggccatttcatgctagttttacac
tgagattatcatcagtgaaaggccccatgagaaagttatttcatcccaag
acaactgtgagatgtttgacttcacagtagttaaatcagccatctattca
ccagcaaagtactgaggaagtcctgtgtgccaagtactgtcctttatgct
ggagtactctagagaccaagaacttcctatagtatccatcttcaagcaca
tggttcatccttcattatgtttgaagcagtccctggggtcaacttatgaa
cgactctgtagctccatttgatggatgggaattaattcagaagacaggag
taatccattcaaatgtcaaaattcactgaataaaataaaatttctataaa
atgaaggactttctggaacactacagaggaggattagaataagagactag
atataaggaaccttgttaggagaccagaggccatttttgtgtaggaaact
cctgtgctataaccttggtggtggtttgaataatgctcagcccaggaagt
ggcatactaggaaatgtggccttgttggagtgggtgtggtcttgttggca
gagtatgtcactgtagggatgggcgtgagaccctcttcctagctgcttga
agctactctttctgtctgctgtagactctcagctcctccagcccctggat
cagccatgctcttaccttgatca
cacatttatatacttggcatccaatatatagttgtataaagactttaaga
aaataaatttaaaaattataaaacaagggagataataatagttacctcag
gggattattgacaggaataaatgtgataacacaccgtggggcttttattt
tgttttaacaggacatggagaaagatcatcaactttaactattcttataa
ctttagataacaacaaggaagttatttctcccaaagatggagctgtcatt
cctgcagctcagcctacttccactcaggtaaacgcaacagaattcgaaca
agaacagaaatctgtctgataaggctcccattgccttacctccatttccc
ccagcatctcccttcccatggggttttcaaagcaataccctctctgtact
tgtgtatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52378161_52379091
seq2: B6Ng01-034E20.b_45_967 (reverse)

seq1  TGATCAAGGTAGGAGCATGGCTGGATCCAGGGGCTGGAGGAGCTGAGAGT  50
      ||||||||||| |||||||||| |||||||||||||||||||||||||| 
seq2  TGATCAAGGTAAGAGCATGGCT-GATCCAGGGGCTGGAGGAGCTGAGAG-  48

seq1  TCTACAGGCAGACAGGAAAAGAGTAGCTTCCAGGCAGCTAGGAAGAGGGT  100
      |||||| ||||||||  |||||||||||| || |||||||||||||||||
seq2  TCTACA-GCAGACAG--AAAGAGTAGCTT-CAAGCAGCTAGGAAGAGGGT  94

seq1  CTCCACGCCCATCCCTACAGTGACATACTTCTGCCAACAAGACCACACCC  150
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CT-CACGCCCATCCCTACAGTGACATAC-TCTGCCAACAAGACCACACCC  142

seq1  ACTCCAACAAGGCCACATTTCCTAGTATTGCCACTTCCTGGGCTGAGCA-  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  ACTCCAACAAGGCCACATTTCCTAGTA-TGCCACTTCCTGGGCTGAGCAT  191

seq1  TATTCAAACCACCACCAAGGTTATAGCACAGGAGTTTCCTACACAAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAACCACCACCAAGGTTATAGCACAGGAGTTTCCTACACAAAAAT  241

seq1  GGCCTCTGGTCTCCTAACAAGGTTCCTTATATCTAGTCTCTTATTCTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGGTCTCCTAACAAGGTTCCTTATATCTAGTCTCTTATTCTAAT  291

seq1  CCTCCTCTGTAGTGTTCCAGAAAGTCCTTCATTTTATAGAAATTTTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTGTAGTGTTCCAGAAAGTCCTTCATTTTATAGAAATTTTATTT  341

seq1  TATTCAGTGAATTTTGACATTTGAATGGATTACTCCTGTCTTCTGAATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTGAATTTTGACATTTGAATGGATTACTCCTGTCTTCTGAATTA  391

seq1  ATTCCCATCCATCAAATGGAGCTACAGAGTCGTTCATAAGTTGACCCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATCCATCAAATGGAGCTACAGAGTCGTTCATAAGTTGACCCCAG  441

seq1  GGACTGCTTCAAACATAATGAAGGATGAACCATGTGCTTGAAGATGGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTCAAACATAATGAAGGATGAACCATGTGCTTGAAGATGGATA  491

seq1  CTATAGGAAGTTCTTGGTCTCTAGAGTACTCCAGCATAAAGGACAGTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAAGTTCTTGGTCTCTAGAGTACTCCAGCATAAAGGACAGTACT  541

seq1  TGGCACACAGGACTTCCTCAGTACTTTGCTGGTGAATAGATGGCTGATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACAGGACTTCCTCAGTACTTTGCTGGTGAATAGATGGCTGATTT  591

seq1  AACTACTGTGAAGTCAAACATCTCACAGTTGTCTTGGGATGAAATAACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGTGAAGTCAAACATCTCACAGTTGTCTTGGGATGAAATAACTT  641

seq1  TCTCATGGGGCCTTTCACTGATGATAATCTCAGTGTAAAACTAGCATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGGGCCTTTCACTGATGATAATCTCAGTGTAAAACTAGCATGAA  691

seq1  ATGGCCTTGGAATGGTACTCCAACTAAAAACACCTTACACCTGTTTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTGGAATGGTACTCCAACTAAAAACACCTTACACCTGTTTATTT  741

seq1  TGGCCACGTGGAAATATATCTTTCACATTACAGAATTTCTCCGTCCAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACGTGGAAATATATCTTTCACATTACAGAATTTCTCCGTCCAATA  791

seq1  GAGTAGTAACTTAGAGTGGGAATGATGTATAACCGTAGGTCTAAATTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTAACTTAGAGTGGGAATGATGTATAACCGTAGGTCTAAATTCAA  841

seq1  AGAACATTAGGGAGTCCCGACATTTCAGATTTTGGTATGTAGTTTCAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTAGGGAGTCCCGACATTTCAGATTTTGGTATGTAGTTTCAAGC  891

seq1  TAGATCTATAACTGTTCTGAGCTTCAGAATTC  931
      ||||||||||||||||||||||||||||||||
seq2  TAGATCTATAACTGTTCTGAGCTTCAGAATTC  923

seq1: chr9_52235844_52236257
seq2: B6Ng01-034E20.g_71_485

seq1  GAATTCCACA-GAATATACTTGGCATCCAATATATAGTTGTATAAAGACT  49
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTATATACTTGGCATCCAATATATAGTTGTATAAAGACT  50

seq1  TTAAGAAAATAAATTTAAAAATTATAAAACAAGGGAGATAATAATAGTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAATAAATTTAAAAATTATAAAACAAGGGAGATAATAATAGTTA  100

seq1  CCTCAGGGGATTATTGACAGGAATAAATGTGATAACACACCGTGGGGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGGATTATTGACAGGAATAAATGTGATAACACACCGTGGGGCTT  150

seq1  TTATTTTGTTTTAACAGGACATGGAGAAAGATCATCAACTTTAACTATTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTTTAACAGGACATGGAGAAAGATCATCAACTTTAACTATTC  200

seq1  TTATAACTTTAGATAACAACAAGGAAGTTATTTCTCCCAAAGATGGAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTTAGATAACAACAAGGAAGTTATTTCTCCCAAAGATGGAGCT  250

seq1  GTCATTCCTGCAGCTCAGCCTACTTCCACTCAGGTAAACGCAACAGAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCCTGCAGCTCAGCCTACTTCCACTCAGGTAAACGCAACAGAATT  300

seq1  CGAACAAGAACAGAAATCTGTCTGATAAGGCTCCCATTGCCTTACCTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAGAACAGAAATCTGTCTGATAAGGCTCCCATTGCCTTACCTCCA  350

seq1  TTTCCCCCAGCATCTCCCTTCCCATGGGGTTTTCAAAGCAATACCCTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCAGCATCTCCCTTCCCATGGGGTTTTCAAAGCAATACCCTCTC  400

seq1  TGTACTTGTGTATAC  414
      |||||||||||||||
seq2  TGTACTTGTGTATAC  415