This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-034K01
Chromosome
9 (Build37)
Map Location
9,724,862 - 9,725,396
singlet/doublet
singlet
Overlap gene
Cntn5
Upstream gene
Pgr
,
9030420J04Rik
Downstream gene
LOC665154
,
LOC100039970
Link
Open Mouse BAC browser
Click to get alignment info.
name
Pgr
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18667
MGI:97567
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
9030420J04Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71544
MGI:1918794
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins
name
Cntn5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:244682
MGI:3042287
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins
name
LOC665154
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665154
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins
pseudo
: _no_value
name
LOC100039970
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039970
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs
name
Pgr
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:112363097
GeneID:18667
MGI:97567
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: progesterone receptor
transcript_id
: NM_008829.2
name
9030420J04Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94385576
GeneID:71544
MGI:1918794
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins
product
: RIKEN cDNA 9030420J04 gene
transcript_id
: XM_146632.7
name
Cntn5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149259445
GeneID:244682
MGI:3042287
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins
product
: contactin 5
transcript_id
: XM_974864.2
name
LOC100039970
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149259457
GeneID:100039970
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs
product
: hypothetical protein LOC100039970
transcript_id
: XM_001473774.1
name
Pgr
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:112363098
CCDS:CCDS22816.1
GeneID:18667
MGI:97567
definition
GO_component
: GO:0005634 - nucleus [Evidence IC]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IMP]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IMP]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0030879 - mammary gland development [Evidence IMP]; GO:0001542 - ovulation (sensu Mammalia) [Evidence IMP]; GO:0050847 - progesterone receptor signaling pathway [Evidence IDA]; GO:0050678 - regulation of epithelial cell proliferation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
product
: progesterone receptor
protein_id
: NP_032855.2
name
9030420J04Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94385577
GeneID:71544
MGI:1918794
definition
codon_start
: 1
product
: hypothetical protein LOC71544
protein_id
: XP_146632.7
name
Cntn5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149259446
GeneID:244682
MGI:3042287
definition
codon_start
: 1
product
: contactin 5
protein_id
: XP_979958.2
name
LOC100039970
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149259458
GeneID:100039970
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001473824.1
name
LOC665154
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149259447
GeneID:665154
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins
product
: similar to MGC27348 protein
pseudo
: _no_value
transcript_id
: XR_031035.1
clone name
MSMg01-480O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408N10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-179N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-177A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-468D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-127P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-278B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343L02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-091L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-360E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-399L23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-350N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-432B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-197A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354B03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-289G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-081F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-209J08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-210C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084A20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-045D18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-299E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020I09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253I13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-176I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-053L23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-226H19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-292M09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-139E24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-341L14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-099M05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-074M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-081E09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-216G03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274D07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-195O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-231I15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-345N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-345M18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-183E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258L15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-146I07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-229E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100K11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240I13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091K20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-298C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-251C06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-025E02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262D08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-291B18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-206P14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285M21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-017K09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076L12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-076P13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095J10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235E15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-319L21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-030M21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257I13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-141G06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-068P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-282L17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-089E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029B17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-183L19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-121K09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170H19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190J13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-282G11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-265C23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-198C04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-150C17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-334G01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-274F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-161L05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160B23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-084N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-334L03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-333H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037N08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-227N07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266B17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034K01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160C16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-133F09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-346L19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-132I08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-304D14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-078I21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142M20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-211N07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309G20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-110E03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-012N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-066D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-097G03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151A22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-054L10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-176A01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-228A03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203L21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-066A22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-223B22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235P23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058I02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-063I08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-319P05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-339D06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-087L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086F18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-268K08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-187A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203D08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-294O21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-286F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027H21
singlet/doublet
doublet
plural/unique
unique