BAC Information

Click to search

BAC

Clone NameB6Ng01-034M07
Chromosome9 (Build37)
Map Location 118,525,554 - 118,670,091
singlet/doubletdoublet
Overlap geneItga9
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
Downstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M07.bB6Ng01-034M07.g
ACCDH863425DH863426
length3501,022
definitionDH863425|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M07, 5' end.DH863426|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,525,554 - 118,525,903)(118,669,492 - 118,670,091)
sequence
cagtttctggtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtg
tgtgcactgtgttagttcaatagccaacttctgggatacaaatgtcactc
agcatatcttcaaccctgccaggttcctttggaacttgacagtctcagcc
gtctgagaacacagtccttggctgtgactcctcctttatctgaccccctg
agcacatctgttaagagcagtggcctctgaggtccctccatccttgcatg
acccacctcactccatgccttcttcccgtcagctggactcaaaattctat
cagcttcactgactgatggctctgcttcccttcttttaccccaagccatt

gaattctggccacaggcacctttgactgcagagctgcctggctctacctt
ttctgccaccatggactatattgtcccagccataagacaaagcaacgcta
cccccaccccccccaggagctgcttcttgtcaggtatttggttgcagcat
tgagaaaactctctgccttactgttctatcactgtgacaaaacaccacgg
ccagggcaacttacaaaagaaactgtttaactgggcttatggtgacagtt
cacgaagcaaagatatgggaacaggaaaagcagagagctcacatcttgat
cctcaagtaggagacagagaggatcctgggaacggacgagtcttaggagt
ctcttgaaatgtcaaagcccatgcatactgactcgtctcctccattaagg
caaccccaccctcccgatccttccaaaacagttccaccattgggagctta
ccattcaaatggctgagactgaggggggccatgtgattcaagctgccaca
gtctctgggacgtgctttaaatgagcaaattgtgcagcattatgaattat
gtctcaataaatctgctaccaaaccttttaatgggaaaaaatgccaacat
actcctgccctgctgctaagccaatctttatcaggacacctgcgcagagc
caactctactccctgttctatgagaaaagaaatggaagccacgtgtgctt
ttgattgcagtcctataaattagaagacaaacaggcaaaattaaagaaac
taaggaggaaattctataaattattttaaacagaacgtgatgaaaagcac
ctctgactgtgacagtctccccagactccatttaccttgcaaagacacaa
agcttttatctctggaaggattgagttacaaacatcaaccagatcctgaa
aatggctgattcaaaggacacaggactcttgtccctcagtcttagtgaaa
gcactaccctctttgtgcagtccatcaccactaaagacagattttggtct
gatatgtgggaagagtctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118525554_118525903
seq2: B6Ng01-034M07.b_53_402

seq1  CAGTTTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGTTTCTGGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGCACTGTGTTAGTTCAATAGCCAACTTCTGGGATACAAATGTCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTGTGTTAGTTCAATAGCCAACTTCTGGGATACAAATGTCACTC  100

seq1  AGCATATCTTCAACCCTGCCAGGTTCCTTTGGAACTTGACAGTCTCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCTTCAACCCTGCCAGGTTCCTTTGGAACTTGACAGTCTCAGCC  150

seq1  GTCTGAGAACACAGTCCTTGGCTGTGACTCCTCCTTTATCTGACCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAACACAGTCCTTGGCTGTGACTCCTCCTTTATCTGACCCCCTG  200

seq1  AGCACATCTGTTAAGAGCAGTGGCCTCTGAGGTCCCTCCATCCTTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCTGTTAAGAGCAGTGGCCTCTGAGGTCCCTCCATCCTTGCATG  250

seq1  ACCCACCTCACTCCATGCCTTCTTCCCGTCAGCTGGACTCAGAACTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  ACCCACCTCACTCCATGCCTTCTTCCCGTCAGCTGGACTCAAAATTCTAT  300

seq1  CAGCTTCACTGACTGATGGCTCTGCTTCCCTTCGTTTACCCCAAGCCATT  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCTTCACTGACTGATGGCTCTGCTTCCCTTCTTTTACCCCAAGCCATT  350

seq1: chr9_118669492_118670091
seq2: B6Ng01-034M07.g_495_1090 (reverse)

seq1  TGAAGGACTC-TCCCACCTATCAGACCAAAAATCTGTCTGTTAGT-GTGA  48
      |||| ||||| |||||| ||||||||| ||||||||||| ||||| ||||
seq2  TGAAAGACTCTTCCCACATATCAGACC-AAAATCTGTCT-TTAGTGGTGA  48

seq1  TGGACTGCACAAAGAGGGTAGGTGGCTTTCACTAAGACTGAGGGACAAGA  98
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TGGACTGCACAAAGAGGGTAG--TGCTTTCACTAAGACTGAGGGACAAGA  96

seq1  GTCCTGTGGTCCTTTGAATTCAGCCATTTTCAGGATCCTGGTTGATGTTT  148
      ||||||| |||||||||| ||||||||||||||||| |||||||||||||
seq2  GTCCTGT-GTCCTTTGAA-TCAGCCATTTTCAGGAT-CTGGTTGATGTTT  143

seq1  GTAACTCAATCCTTCCAGAGAT-AAAGCTTTGTGTCTTTGCAAGGTAAAT  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAACTCAATCCTTCCAGAGATAAAAGCTTTGTGTCTTTGCAAGGTAAAT  193

seq1  GGAGTCTGGGGAGACTGTCACAGTCAGAGGTGCTTTTCATCACGTTCTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGGGGAGACTGTCACAGTCAGAGGTGCTTTTCATCACGTTCTGT  243

seq1  TTAAAATTATTTATAGAATTTCCTCCTTAGTTTCTTTAATTTTGCCTGTT  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATTTATAGAATTTCCTCCTTAGTTTCTTTAATTTTGCCTGTT  293

seq1  TGTCTTCTAATTTATAGGACTGCAATCAAAAGCACACGTGGCTTCCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTAATTTATAGGACTGCAATCAAAAGCACACGTGGCTTCCATTT  343

seq1  CTTTTCTCATAGAACAGGGAGTAGAGTTGGCTCTGCGCAGGTGTCCTGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCATAGAACAGGGAGTAGAGTTGGCTCTGCGCAGGTGTCCTGAT  393

seq1  AAAGATTGGCTTAGCAGCAGGGCAGGAGTATGTTGGCATTTTTTCCCATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGGCTTAGCAGCAGGGCAGGAGTATGTTGGCATTTTTTCCCATT  443

seq1  AAAAGGTTTGGTAGCAGATTTATTGAGACATAATTCATAATGCTGCACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTGGTAGCAGATTTATTGAGACATAATTCATAATGCTGCACAA  493

seq1  TTTGCTCATTTAAAGCACGTCCCAGAGACTGTGGCAGCTTGAATCACATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATTTAAAGCACGTCCCAGAGACTGTGGCAGCTTGAATCACATG  543

seq1  GCCCCCCTCAGTCTCAGCCATTTGAATGGTAAGCTCCCAATGGTGGAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCTCAGTCTCAGCCATTTGAATGGTAAGCTCCCAATGGTGGAACT  593

seq1  GTT  600
      |||
seq2  GTT  596