BAC Information

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BAC

Clone NameB6Ng01-035B21
Chromosome9 (Build37)
Map Location 104,612,530 - 104,790,669
singlet/doubletdoublet
Overlap geneCpne4
Upstream geneTmem108, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
Downstream geneMrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035B21.bB6Ng01-035B21.g
ACCDH863675DH863676
length255994
definitionDH863675|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B21, 5' end.DH863676|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,790,415 - 104,790,669)(104,612,530 - 104,613,556)
sequence
catgaatccagatgtctcatgtaagttttgctgtgccagtttgcaggctt
ctgttcttgcctgggtgttgttgtagttgttgctgttgctgttgctgttg
ttgttgttgttgttgttgatgatgatgatgatgatgatgatgatgatggt
tggacaggtagcaatgatggtagtgatcattatgctgctgctgctgctgc
tggtagtgatggtgataataatgattaagatagcattatagttatggtgg
gggat
gaattcaccacataaacaaacagaaaggaaaaagccacatgatcatttca
ttagattttgaaaaagtctttgacaaagtccaagacccctttatgataaa
aatcttggaaagggcagggacacaaggcccataccgaaacacaataaagg
caatgtacagcatgccaatagccaacaccaaattaaatgaaggaaactta
aagtagttccactaaaatcaggaacaagtctgttgactctttctgtatct
cttcgacagagtacttggagttctagccagtttcacttccaaacctgtca
tttgaaagtatcagctggtcactgacagttaccacacacctcccatatgc
caggtgcccttcttgttacttcatgtgagaatgaacagttatgttcctca
ggagacagcataatgcatgaatcaaaatgttctctgcaaacttggatggg
gatgtcagagaaaggtatgttccacattgaagtaggaagatgagccaagg
aagactttatagaggatatatgacctgcggttgattttaagttgtgagtc
tgaagggaataaggtgcagaaataacactgctttcaaagaaaaacctaaa
ctttttgcagaaatctgagcccaagaaagggagagccccagttgataaac
tgtgataagtcaataatgagtagctctgagaataccatatgaagggtgaa
gcatcttcctggctggagccttaagtctttgctatttttaaagactgatt
gagaagaagaagcctgagccttcctagggccctgctgctctcgcgtcact
gtctgttcagcacagatggttttcagagatctcagctggggagaggaaag
acttcccaggagactgctgctttgaggctagtctttgatagagatgcctg
atgtgtctcagctgtgtgatcactccgatgtgcttctctgactctacatg
agacgatgtagcatgtgaatgacggctgactctgctcatgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_104790415_104790669
seq2: B6Ng01-035B21.b_51_305 (reverse)

seq1  ATCCCCCACCATAACTATAATGCTATCTTAATCATTATTATCACCATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCACCATAACTATAATGCTATCTTAATCATTATTATCACCATCAC  50

seq1  TACCAGCAGCAGCAGCAGCAGCATAATGATCACTACCATCATTGCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGCAGCAGCAGCAGCATAATGATCACTACCATCATTGCTACCT  100

seq1  GTCCAACCATCATCATCATCATCATCATCATCATCATCAACAACAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACCATCATCATCATCATCATCATCATCATCATCAACAACAACAAC  150

seq1  AACAACAACAGCAACAGCAACAGCAACAACTACAACAACACCCAGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAGCAACAGCAACAGCAACAACTACAACAACACCCAGGCAAG  200

seq1  AACAGAAGCCTGCAAACTGGCACAGCAAAACTTACATGAGACATCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGCCTGCAAACTGGCACAGCAAAACTTACATGAGACATCTGGAT  250

seq1  TCATG  255
      |||||
seq2  TCATG  255

seq1: chr9_104612530_104613556
seq2: B6Ng01-035B21.g_64_1057

seq1  GAATTCACCACATAAACAAACAGAAAGGAAAAAGCCACATGATCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACATAAACAAACAGAAAGGAAAAAGCCACATGATCATTTCA  50

seq1  TTAGATTTTGAAAAAGTCTTTGACAAAGTCCAAGACCCCTTTATGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTGAAAAAGTCTTTGACAAAGTCCAAGACCCCTTTATGATAAA  100

seq1  AATCTTGGAAAGGGCAGGGACACAAGGCCCATACCGAAACACAATAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGGAAAGGGCAGGGACACAAGGCCCATACCGAAACACAATAAAGG  150

seq1  CAATGTACAGCATGCCAATAGCCAACACCAAATTAAATGAAGGAAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACAGCATGCCAATAGCCAACACCAAATTAAATGAAGGAAACTTA  200

seq1  AAGTAGTTCCACTAAAATCAGGAACAAGTCTGTTGACTCTTTCTGTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTCCACTAAAATCAGGAACAAGTCTGTTGACTCTTTCTGTATCT  250

seq1  CTTCGACAGAGTACTTGGAGTTCTAGCCAGTTTCACTTCCAAACCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAGAGTACTTGGAGTTCTAGCCAGTTTCACTTCCAAACCTGTCA  300

seq1  TTTGAAAGTATCAGCTGGTCACTGACAGTTACCACACACCTCCCATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTATCAGCTGGTCACTGACAGTTACCACACACCTCCCATATGC  350

seq1  CAGGTGCCCTTCTTGTTACTTCATGTGAGAATGAACAGTTATGTTCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCCTTCTTGTTACTTCATGTGAGAATGAACAGTTATGTTCCTCA  400

seq1  GGAGACAGCATAATGCATGAATCAAAATGTTCTCTGCAAACTTGGATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGCATAATGCATGAATCAAAATGTTCTCTGCAAACTTGGATGGG  450

seq1  GATGTCAGAGAAAGGTATGTTCCACATTGAAGTAGGAAGATGAGCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGAGAAAGGTATGTTCCACATTGAAGTAGGAAGATGAGCCAAGG  500

seq1  AAGACTTTATAGAGGATATATGACCTGCGGTTGATTTTAAGTTGTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTATAGAGGATATATGACCTGCGGTTGATTTTAAGTTGTGAGTC  550

seq1  TGAAGGGAATAAGGTGCAGAAATAACACTGCTTTCAAAGAAAAACCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAATAAGGTGCAGAAATAACACTGCTTTCAAAGAAAAACCTAAA  600

seq1  CTTTTTGCAGAAATCTGAGCCCAAGAAAGGGAGAGCCCCAGTTGATAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCAGAAATCTGAGCCCAAGAAAGGGAGAGCCCCAGTTGATAAAC  650

seq1  TGTGATAAGTCAATAATGAGTAGCTCTGAGAATACCATATGAAGGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAGTCAATAATGAGTAGCTCTGAGAATACCATATGAAGGGTGAA  700

seq1  GCATCTTCCTGGCTGGAGCCTTAAGTCTTTGCTATTTTTAAAGACTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCCTGGCTGGAGCCTTAAGTCTTTGCTATTTTTAAAGACTGATT  750

seq1  GAGAAGAAGAAGCCTGAGCCTTCCTAGGGCCCCTGCTGCTCTCGCGTCAC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGAAGAAGAAGCCTGAGCCTTCCTAGGG-CCCTGCTGCTCTCGCGTCAC  799

seq1  TGTCTGTTCAGCACAGATGGTTTTCAGAAGATCTCAGCTGGGGAGAGGAA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCTGTTCAGCACAGATGGTTTTCAG-AGATCTCAGCTGGGGAGAGGAA  848

seq1  AGGACTTCCCAGGAAGGACTGCTGCTTTTGAGGGCTAAGTCTTTGAATAG  900
      | ||||||||||||  ||||||||| ||||| |||| |||||||| ||||
seq2  A-GACTTCCCAGGA--GACTGCTGC-TTTGA-GGCT-AGTCTTTG-ATAG  891

seq1  AGAATTGCCTGGATGTGGTCTCCAGCTTGTGTGAATTCACTCCGATGGTG  950
      |||  ||||| ||||| |||| |||| |||||||  |||||||||| |||
seq2  AGA--TGCCT-GATGT-GTCT-CAGC-TGTGTGA--TCACTCCGAT-GTG  932

seq1  GCCTTTCCTCTGACTCTACCAATGAGACCGAGTGTAGGCATGTTGGATAT  1000
        |||  ||||||||||||  |||||| ||| |||| ||||||  || ||
seq2  --CTT--CTCTGACTCTAC--ATGAGA-CGA-TGTA-GCATGT--GA-AT  970

seq1  GACGGCTGACTTCTGCTCCATTGCTGG  1027
      |||||||||| |||||||   ||||||
seq2  GACGGCTGAC-TCTGCTC--ATGCTGG  994