BAC Information

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BAC

Clone NameB6Ng01-035E02
Chromosome9 (Build37)
Map Location 16,499,315 - 16,657,389
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc36a4, Mtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035E02.bB6Ng01-035E02.g
ACCDH863773DH863774
length998467
definitionDH863773|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E02, 5' end.DH863774|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,656,349 - 16,657,389)(16,499,315 - 16,499,786)
sequence
gaattcacactattatgtcttttcttcaacagtttccgatttataactac
acattcagactccgtattccccaggctctgggtgtgtgtgcagtggcaca
catttgaaaatcgtgcttcttttgtccttgtcttcagttgttcagtacaa
tggctgtggcttctggaggtttcttaactgatgaaatgtctcataagata
agagtggacttaatgaacccacttaaaatacaagagctgcacctatcaat
tagcatagcctttacactaaccccggttcttgctgtgttcctgtggctta
tttcagtcattagtgcttatcacggctgtgacaggctggaattccttaca
cacacagatcatgcaagctctaatttcctctaggaagaccatgttaccag
agttttcatgcatttgaaatcgggcatcagaaaagcagatgattattccg
aatttgacgagtccttaccgtttagctatagaacaaggtgttacaaaatg
tgctgtttgcacaggaatctacattttgcagtgagtaacaggtgtcacat
gctcagcactgatgtagctgacatttttaattgtgattagatgtactaac
tgtgggctgataattgtttgttaaaagcattattttttctgaatttctgt
ctgatgttaacaaatgagtattgaaaatgatattgcatgaatataattta
ttggggcgagaaagccagacaacaaaatcaaaaccagtgctttaagttat
ctgggcctcaggccagaactattacccctcttagcagcatacacaaaacc
aacctacaacccagtgttaagttgtcaatatttcaaaaattgaaggtcac
tccatctctatttgcttatgtttgtcacctaaaattaaaaatttcaagtc
tttttaaatctcgagacgatttaggatgttaactttagtattactatcct
gaacttctgggcttgtctagtactatctggtgctaagctgctagacat
ccatagggagtggtactactagtaggtatggcccttttggagtaggtgtg
gcttttttttttttttttttttttttttgagaaagtgtgttttagggttt
ggggatttgaattttcagaagctcatgccaggcctagtgtctcactctct
tttcctgttccctgctgctcttgttgtagaactctcaactactctctaga
accaggcctgcctgcatcctgttactctttttcccatgatgaaaattgac
taaactatatcttcatagtagtagaaatcctaagacaacccattcctgaa
ccttatgatattaaatgatcatatgatctcctagatattctgatagtgag
tattaattatcatagaatcacctatgatgagagctcaaatgttggattgt
ttatatcactttgaccagtgggactgtcttggttgccttaattgacacat
tttgtgtgtgtggtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16656349_16657389
seq2: B6Ng01-035E02.b_44_1041 (reverse)

seq1  ATGTCTAGCAAGCTCTAAGCACCCAGATAGTTACTAAGAAACCAAAGCCC  50
      ||||||||||    || |||| |||||||| |||| |||     ||||||
seq2  ATGTCTAGCA---GCTTAGCA-CCAGATAG-TACT-AGA----CAAGCCC  40

seq1  CCAAAGAAGTTCCAGTGATAGGTAATTTACTAAAGTTATACATTCTCTTA  100
          ||||||| ||| |||| ||||  ||||||||||| |||   || ||
seq2  ----AGAAGTT-CAG-GATA-GTAA--TACTAAAGTTA-ACA---TCCTA  77

seq1  GATCGTTCTTTGGAGATTTAAATAGATCTTTGTAAATTTTTTTAATTTTA  150
       ||||   | | |||||||||| |||   ||| ||   ||||||||||| 
seq2  AATCG---TCTCGAGATTTAAAAAGA--CTTGAAA---TTTTTAATTTT-  118

seq1  AGTTGACAAACATAAGCAAATATGAGATGTGAGTGACCTTCAATCTTTGA  200
      || ||||||||||||||||||| |||||| |||||||||||||| |||||
seq2  AGGTGACAAACATAAGCAAATA-GAGATG-GAGTGACCTTCAATTTTTGA  166

seq1  AATATTTGAACAACTTAACAACTTGTGTTTGTAGGTTGGTTTTTGTGTAT  250
      ||||||   |||||||||| |||   | ||||||||||| ||||||||||
seq2  AATATT--GACAACTTAAC-ACT--GGGTTGTAGGTTGG-TTTTGTGTAT  210

seq1  GGCTGCTAATGAGTGGTAATAGTTCTGGCCTGAGGCCACAGATAACTATA  300
       |||||||| ||| ||||||||||||||||||||||| ||||||||| ||
seq2  -GCTGCTAA-GAGGGGTAATAGTTCTGGCCTGAGGCC-CAGATAACT-TA  256

seq1  AGGCACTGGTTTTGATTTTGTTGTCTGGCTTTCTCG-CCCAATAAATTAT  349
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGCACTGGTTTTGATTTTGTTGTCTGGCTTTCTCGCCCCAATAAATTAT  306

seq1  ATTCATGCAATAATCATTTTCAATACTCATTTGTTAACATCAGACAGAAA  399
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCAAT-ATCATTTTCAATACTCATTTGTTAACATCAGACAGAAA  355

seq1  TTCAG-AAAAATAATGCTTTTAACAAACAATTATCAGCCCACAGTTAGTA  448
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAAATAATGCTTTTAACAAACAATTATCAGCCCACAGTTAGTA  405

seq1  CATCTAATCACAATTAAAAATGTCAGCTACATCAGTGCTGAGCATGTGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATCACAATTAAAAATGTCAGCTACATCAGTGCTGAGCATGTGAC  455

seq1  ACCTGTTACTCACTGCAAAATGTAGATTCCTGTGCAAACAGCACATTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTACTCACTGCAAAATGTAGATTCCTGTGCAAACAGCACATTTTG  505

seq1  TAACACCTTGTTCTATAGCTAAACGGTAAGGACTCGTCAAATTCGGAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCTTGTTCTATAGCTAAACGGTAAGGACTCGTCAAATTCGGAATA  555

seq1  ATCATCTGCTTTTCTGATGCCCGATTTCAAATGCATGAAAACTCTGGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGCTTTTCTGATGCCCGATTTCAAATGCATGAAAACTCTGGTAA  605

seq1  CATGGTCTTCCTAGAGGAAATTAGAGCTTGCATGATCTGTGTGTGTAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTTCCTAGAGGAAATTAGAGCTTGCATGATCTGTGTGTGTAAGG  655

seq1  AATTCCAGCCTGTCACAGCCGTGATAAGCACTAATGACTGAAATAAGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCCTGTCACAGCCGTGATAAGCACTAATGACTGAAATAAGCCA  705

seq1  CAGGAACACAGCAAGAACCGGGGTTAGTGTAAAGGCTATGCTAATTGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACACAGCAAGAACCGGGGTTAGTGTAAAGGCTATGCTAATTGATA  755

seq1  GGTGCAGCTCTTGTATTTTAAGTGGGTTCATTAAGTCCACTCTTATCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCTCTTGTATTTTAAGTGGGTTCATTAAGTCCACTCTTATCTTA  805

seq1  TGAGACATTTCATCAGTTAAGAAACCTCCAGAAGCCACAGCCATTGTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATTTCATCAGTTAAGAAACCTCCAGAAGCCACAGCCATTGTACT  855

seq1  GAACAACTGAAGACAAGGACAAAAGAAGCACGATTTTCAAATGTGTGCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTGAAGACAAGGACAAAAGAAGCACGATTTTCAAATGTGTGCCA  905

seq1  CTGCACACACACCCAGAGCCTGGGGAATACGGAGTCTGAATGTGTAGTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACACACCCAGAGCCTGGGGAATACGGAGTCTGAATGTGTAGTTA  955

seq1  TAAATCGGAAACTGTTGAAGAAAAGACATAATAGTGTGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGGAAACTGTTGAAGAAAAGACATAATAGTGTGAATTC  998

seq1: chr9_16499315_16499786
seq2: B6Ng01-035E02.g_67_539

seq1  GAATTCCCATAGGGAGTGGTACTACTAGTAGGTATGGCCCTTTTGGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGGGAGTGGTACTACTAGTAGGTATGGCCCTTTTGGAGTA  50

seq1  GGTGTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGTGTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGTGTGTTTTA  100

seq1  GGGTTGTGGGATTTGAATTTTCAGAAGCTCATGCCAGGCCTAGTGTCTCA  150
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGGGATTTGAATTTTCAGAAGCTCATGCCAGGCCTAGTGTCTCA  150

seq1  CTCTCTTTTCCTGTTCCCTGCTGCTCTTGTTGTAGAACTCTCAACTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTCCTGTTCCCTGCTGCTCTTGTTGTAGAACTCTCAACTACTC  200

seq1  TCTAGAACCAGGCCTGCCTGCATCCTGTTACTCTTTTTCCCATGATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCAGGCCTGCCTGCATCCTGTTACTCTTTTTCCCATGATGAAA  250

seq1  ATTGACTAAACTATATCTTCATAGTAGTAGAAATCCTAAGACAACCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAAACTATATCTTCATAGTAGTAGAAATCCTAAGACAACCCATT  300

seq1  CCTGAACCTTATGATATTAAATGATCATATGATCTCCTAGATATTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCTTATGATATTAAATGATCATATGATCTCCTAGATATTCTGAT  350

seq1  AGTGAGTATTAATTATCATAGAATCACCTATGATGAGAGCTCAAATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATTAATTATCATAGAATCACCTATGATGAGAGCTCAAATGTTG  400

seq1  GATTGTTTATATCACTTTGACCAGTGGGACTGTCTTGGTTGCCTTAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTATATCACTTTGACCAGTGGGACTGTCTTGGTTGCCTTAATTG  450

seq1  ACACA-TTTGTGTGTGTGGTCTT  472
      ||||| |||||||||||||||||
seq2  ACACATTTTGTGTGTGTGGTCTT  473