BAC Information

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BAC

Clone NameB6Ng01-035F12
Chromosome9 (Build37)
Map Location 100,150,835 - 100,293,163
singlet/doubletdoublet
Overlap genenone
Upstream geneCep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F12.bB6Ng01-035F12.g
ACCDH863835DH863836
length3821,038
definitionDH863835|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F12, 5' end.DH863836|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,292,776 - 100,293,163)(100,150,835 - 100,151,899)
sequence
agcttgatgaatgcttggattagtaggtgtgtcccatcacatcaggctag
ataatatttttaaaaaaactatcagaatgaccttgtatactggaaagaac
tctccttagttgtgagaaatgttttacttttcttgattctttttaaaaat
attttcttcactgtttgttcttttacttgttgtggagagccctggggcta
tttgtaatttgatgctaattccattctcctgggaggggctttgaacaagg
aatgagtcagcactcaggtgatttcctgtaaacctgcttcccaccttaat
ttgtaaaataaatgctagagctagaggaagggaaggtggagctgaaagtg
gggagggagaagaaggaggagtgggagagagt
gaattctaacgccagccaattccttggactctctgagccttggttcgtca
tcttcaacttagggatgttgataacagtccccaccttgtggggctatagt
aaggacttaaggagattataatgagctgacaggtattaagtgctccgaat
gtattacacattacctgatgctagccttagttcttggtcagagcttcttg
ttagtctgctctattacagcccatccacagggtttctcagcagcaggtat
ttgccgccatgctccagaggcaactgtcattaggtccagttctattgtag
aggtcacgagtcagccacagcatgcctgttgtcacagttatccttgacat
ccaaaacatccacgccacagtcagtgaacgtacatcagtcaaaggtgtag
aacaaaggagagactgaagagatgatgtggattgaatccagtccagggaa
tactttgggaggagaatcatccgccttcatagaatctgtttcgtttcgtt
ttgttttgtcacttgtaaagctgagataataaccaccacttataaagtac
taaagggcataccttggtgtgttgctcactcttcactaataacttgagtc
gactaagaatcacagaggagatgcatcttggggtgtacttagggcatttc
cagagagatttaaataaggaaagacctaccctgaatgtagtggtaccatc
ccacagagtgaggtcccaaactgagtaataaggggagaggaggaagtcag
ttgatcaccagcctttatctctctctgtttcttgactgagatgcaacatg
accagcagcctcagccttgctaccacattttcctcactgtaaactgtacc
ttcagtctgtgagcggaaagagacccttcctcccttaggtgatttcatta
tgcattcatcacagcatgataaattatactaatacaataactaaaataaa
atcattgcaatgctttgctgctgaggatatgtatttgtatcactaatcaa
ctgaagcaatccaatgctacctagtcctgataaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100292776_100293163
seq2: B6Ng01-035F12.b_48_435 (reverse)

seq1  ACTCTCTCCCACTCCTCCTTCTTCTCCCTCCCCACTTTCAGCTCCACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCCACTCCTCCTTCTTCTCCCTCCCCACTTTCAGCTCCACCTT  50

seq1  CCCTTCCTCTAGCTCTAGCATTTATTTTACAAATTAAGGTGGGAAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTAGCTCTAGCATTTATTTTACAAATTAAGGTGGGAAGCAGG  100

seq1  TTTACAGGAAATCACCTGAGTGCTGACTCATTCCTTGTTCAAAGCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGAAATCACCTGAGTGCTGACTCATTCCTTGTTCAAAGCCCCTC  150

seq1  CCAGGAGAATGGAATTAGCATCAAATTACAAATAGCCCCAGGGCTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAATGGAATTAGCATCAAATTACAAATAGCCCCAGGGCTCTCCA  200

seq1  CAACAAGTAAAAGAACAAACAGTGAAGAAAATATTTTTAAAAAGAATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTAAAAGAACAAACAGTGAAGAAAATATTTTTAAAAAGAATCAA  250

seq1  GAAAAGTAAAACATTTCTCACAACTAAGGAGAGTTCTTTCCAGTATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAAAACATTTCTCACAACTAAGGAGAGTTCTTTCCAGTATACAA  300

seq1  GGTCATTCTGATAGTTTTTTTAAAAATATTATCTAGCCTGATGTGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCTGATAGTTTTTTTAAAAATATTATCTAGCCTGATGTGATGGG  350

seq1  ACACACCTACTAATCCAAGCATTCATCAAGCTGAATTC  388
      ||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTACTAATCCAAGCATTCATCAAGCTGAATTC  388

seq1: chr9_100150835_100151899
seq2: B6Ng01-035F12.g_70_1107

seq1  GAATTCTAACGCCAGCCAATTCCTTGGACTCTCTGAGCCTTGGTTCGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACGCCAGCCAATTCCTTGGACTCTCTGAGCCTTGGTTCGTCA  50

seq1  TCTTCAACTTAGGGATGTTGATAACAGTCCCCACCTTGTGGGGCTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACTTAGGGATGTTGATAACAGTCCCCACCTTGTGGGGCTATAGT  100

seq1  AAGGACTTAAGGAGATTATAATGAGCTGACAGGTATTAAGTGCTCCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTAAGGAGATTATAATGAGCTGACAGGTATTAAGTGCTCCGAAT  150

seq1  GTATTACACATTACCTGATGCTAGCCTTAGTTCTTGGTCAGAGCTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACACATTACCTGATGCTAGCCTTAGTTCTTGGTCAGAGCTTCTTG  200

seq1  TTAGTCTGCTCTATTACAGCCCATCCACAGGGTTTCTCAGCAGCAGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGCTCTATTACAGCCCATCCACAGGGTTTCTCAGCAGCAGGTAT  250

seq1  TTGCCGCCATGCTCCAGAGGCAACTGTCATTAGGTCCAGTTCTATTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGCCATGCTCCAGAGGCAACTGTCATTAGGTCCAGTTCTATTGTAG  300

seq1  AGGTCACGAGTCAGCCACAGCATGCCTGTTGTCACAGTTATCCTTGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACGAGTCAGCCACAGCATGCCTGTTGTCACAGTTATCCTTGACAT  350

seq1  CCAAAACATCCACGCCACAGTCAGTGAACGTACATCAGTCAAAGGTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACATCCACGCCACAGTCAGTGAACGTACATCAGTCAAAGGTGTAG  400

seq1  AACAAAGGAGAGACTGAAGAGATGATGTGGATTGAATCCAGTCCAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGAGAGACTGAAGAGATGATGTGGATTGAATCCAGTCCAGGGAA  450

seq1  TACTTTGGGAGGAGAATCATCCGCCTTCATAGAATCTGTTTCGTTTCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGGAGGAGAATCATCCGCCTTCATAGAATCTGTTTCGTTTCGTT  500

seq1  TTGTTTTGTCACTTGTAAAGCTGAGATAATAACCACCACTTATAAAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTCACTTGTAAAGCTGAGATAATAACCACCACTTATAAAGTAC  550

seq1  TAAAGGGCATACCTTGGTGTGTTGCTCACTCTTCACTAATAACTTGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGCATACCTTGGTGTGTTGCTCACTCTTCACTAATAACTTGAGTC  600

seq1  GACTAAGAATCACAGAGGAGATGCATCTTGGGGTGTACTTAGGGCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGAATCACAGAGGAGATGCATCTTGGGGTGTACTTAGGGCATTTC  650

seq1  CAGAGAGATTTAAATAAGGGAAGACCTACCCTGAATGTAGTGGTACCATC  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGAGAGATTTAAATAAGGAAAGACCTACCCTGAATGTAGTGGTACCATC  700

seq1  CCACAGAGTGAGGTCCCAAACTGAGTAATAAGGGGGAGAGGAGGAAGTCA  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCACAGAGTGAGGTCCCAAACTGAGTAATAA-GGGGAGAGGAGGAAGTCA  749

seq1  GTTGATCACCAGCCTTTATCTCTCTCTGTTTCTTGACTGAAGATGCAACA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTGATCACCAGCCTTTATCTCTCTCTGTTTCTTGACTG-AGATGCAACA  798

seq1  TGACCAGCAGCCTCAGCCTTGCTACCACACTTTCCTCACTGTAAACTGTA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGACCAGCAGCCTCAGCCTTGCTACCACATTTTCCTCACTGTAAACTGTA  848

seq1  CCTTCAGTCTGTGAGCGGAAAGAGACCCTTCCTTCCCTAAGTGGATTTCA  900
      |||||||||||||||||||||||||||||||| ||||| ||  |||||||
seq2  CCTTCAGTCTGTGAGCGGAAAGAGACCCTTCC-TCCCTTAGGTGATTTCA  897

seq1  TTATGCATTTCATCACAGCAATGATAAAATTATAACTAATACAATAACTA  950
      ||||||| ||||||||||| ||||| ||||||| ||||||||||||||| 
seq2  TTATGCA-TTCATCACAGC-ATGAT-AAATTAT-ACTAATACAATAACT-  942

seq1  AAAATAAAATTCCAATGGCAAATGCTTTGCCTGCTGAGGATTATGTATTT  1000
      ||||||||||  || ||   ||||||||| |||||||||| |||||| ||
seq2  AAAATAAAAT--CATTG--CAATGCTTTG-CTGCTGAGGA-TATGTA-TT  985

seq1  TGTATCACTAATTCAAACTGTAGCCAATTCCCAT-CTGCCTACCCTTAGG  1049
      ||||||||||||   ||||| |||  | ||| || || ||||       |
seq2  TGTATCACTAAT--CAACTGAAGC--AATCCAATGCTACCTA-------G  1024

seq1  TCCTGTGATAAACTCT  1065
      |||  |||||||||||
seq2  TCC--TGATAAACTCT  1038