BAC Information

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BAC

Clone NameB6Ng01-035N15
Chromosome9 (Build37)
Map Location 33,273,648 - 33,416,977
singlet/doubletdoublet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035N15.bB6Ng01-035N15.g
ACCDH864209DH864210
length1,0861,052
definitionDH864209|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N15, 5' end.DH864210|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,415,871 - 33,416,977)(33,273,648 - 33,274,716)
sequence
gaattctctcctgtgaacgaaagctcaaaccaaacagaaactgcttcatt
ataccataaccaccatataattgcaccaagggcacatcttaattgtctgg
ttagtattatagcatgcagggtttgtggatggataaagccattgatgtaa
tctacccaaattgtctaaatagtataagctagctagcagggataaagttt
cccagtcagttcctgagtgacctaagtatgtgctagagtttgtggtgttt
tttctagttatagtggataatcagaagcagcctgtgttgtttcaaaggtc
tctgcactgggattttcatttgataacttattccttctgaaaatactatt
gtctacccatgcaaagttcctccattccaattccttttgttattataatt
tttattagattacagatttgttggtttccataagcttcccccacccattc
ttagtttagggtaatctttcttttccttttctccccttcctgttcccagt
tcccagtatctctgccctcttctcatgtaataactcttttactacaccct
ctgattatatttttagttgggttgcaaaatagtagatttctatatattct
ttttttgttttaaacagagtcatactatgtaggcctggctgccctagaat
ttgctctgtagatcaggttagccttgaaattgccaagataatcctgagtc
tgtctcccaagtgctagaaaatacacattgttagctcctttatctttatt
agctcccctgctttctcatttctgatatctcctgtgttacctaccgcctg
gttaaatctttcagcctcagaattctccatttctcctcatgttctatttg
tattctgtatctctcctcccttactgaatcccacataacccacttctagc
tcctggtttctacatgcatgccagttaacacaaacaacagaaaacattta
gaataacatgaagaagctatttgcttttctgtgctggatacttcactaat
ttttcctccatttgcctgaaatatcatcttcattttcttccactgaataa
atccatgagttcattactaacctgtcttgttcattc
gaattcacatgatctgtccattttagttcagatttcccaactagttactg
gttcctacagtacatttctcagttgcatttttgctccagaaagttatagt
cctctctgactgctggtttctctcctcctttggaatatgagtttgagtga
tggagacaaacaaagctttgaatactctttgttgttgtttaactttttac
ttgttaaaatggaaaataaacttgtatatgccagactagaaacaacaaaa
tgagttttttttaaaaatttctctctgttttcccaatgattctgtataca
attaatttcatttgttttgttttgttactgttccaagatgatttgcggat
agactgcttttcccaacgatatatgccagtaaaatttaaaagatgataca
tattgtatgtgaagaggaaaatgagcacctttctaatcttgcttctgtta
gtttcttttggagagcaaggcctagtggtgcatgcttttaataccagcac
ttgggaaatagaggcagtaagagttcaaggccagcctggtctacatagtg
agaccctgtctcaataataataataataataataataataataataataa
taataatgattatgatacttcctaccccctctcacccctttactttcacc
ttttaatgtcattatgacttcaaagaatatttgtttgttctttccatttt
tacccagagaagcaatgtatttgtgagttaggatgctgtatctctacttc
ccaaacaaattagcatactctttacatccacttctatgaataactcaaat
atgtgcattcacatgtgcacgcacatgtgttgcatgtatgtgtgtgcatg
tgtatgtgcacatgggtattgcatgtatgtgtacatgagttacctcaact
gtcactgtgatagatctaaattttctgggtgatgtgcatctgggcatgtc
tgtgatagttgtttgatagatcaagtgagggggagactgatttcttgaac
ctttctagctggaacctaatataataacacggagaaaatgaatgtggcat
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33415871_33416977
seq2: B6Ng01-035N15.b_44_1129 (reverse)

seq1  GAATGAACAAGACAGGTGTAGTATATGAACATCATGGATTTTATTCAGTT  50
      ||||||||||||||||| ||||| |||||| ||||||| ||||||||| |
seq2  GAATGAACAAGACAGGT-TAGTA-ATGAAC-TCATGGA-TTTATTCAG-T  45

seq1  GGAAAGAAAAATGAAAGGATGATATTTCAGGCAAATGGAGGAAAAAATTA  100
      ||||   ||||||||  |||||||||||||||||||||||||||||  | 
seq2  GGAA--GAAAATGAA--GATGATATTTCAGGCAAATGGAGGAAAAA--TT  89

seq1  AGTGAAGTAATCCAGGCACAGAAAAGCAAATAGCTTTCTTCATGTTTATT  150
      |||||||| ||||| ||||||||||||||||||| ||||||||| |||||
seq2  AGTGAAGT-ATCCA-GCACAGAAAAGCAAATAGC-TTCTTCATG-TTATT  135

seq1  CTAAATGTTTTTCTGTTGTTTTGTGTTTAACTTGGCATGCATGTAGAAAC  200
      ||||||| |||||||||| |||||| ||||| ||||||||||||||||||
seq2  CTAAATG-TTTTCTGTTG-TTTGTG-TTAAC-TGGCATGCATGTAGAAAC  181

seq1  CAGGGAGCTAGAAGTGGGTTATGTGGGATTCAGTAAGGGAGGAGAGATAA  250
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CA-GGAGCTAGAAGTGGGTTATGTGGGATTCAGTAAGGGAGGAGAGAT-A  229

seq1  CAGAATACAAATAGAACATGAGGAGAAATGGAGAATTCTGAGGCTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACAAATAGAACATGAGGAGAAATGGAGAATTCTGAGGCTGAAAG  279

seq1  ATTTAACCAGGCGGTAGGTAACACAGGAGATATCAGAAATGAGAAAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCAGGCGGTAGGTAACACAGGAGATATCAGAAATGAGAAAGCAG  329

seq1  GGGAGCTAATAAAGATAAAGGAGCTAACAATGTGTATTTTCTAGCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAATAAAGATAAAGGAGCTAACAATGTGTATTTTCTAGCACTTG  379

seq1  GGAGACAGACTCAGGATTATCTTGGCAATTTCAAGGCTAACCTGATCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGACTCAGGATTATCTTGGCAATTTCAAGGCTAACCTGATCTAC  429

seq1  AGAGCAAATTCTAGGGCAGCCAGGCCTACATAGTATGACTCTGTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAATTCTAGGGCAGCCAGGCCTACATAGTATGACTCTGTTTAAAA  479

seq1  CAAAAAAAGAATATATAGAAATCTACTATTTTGCAACCCAACTAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGAATATATAGAAATCTACTATTTTGCAACCCAACTAAAAATA  529

seq1  TAATCAGAGGGTGTAGTAAAAGAGTTATTACATGAGAAGAGGGCAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAGGGTGTAGTAAAAGAGTTATTACATGAGAAGAGGGCAGAGAT  579

seq1  ACTGGGAACTGGGAACAGGAAGGGGAGAAAAGGAAAAGAAAGATTACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAACTGGGAACAGGAAGGGGAGAAAAGGAAAAGAAAGATTACCCT  629

seq1  AAACTAAGAATGGGTGGGGGAAGCTTATGGAAACCAACAAATCTGTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGAATGGGTGGGGGAAGCTTATGGAAACCAACAAATCTGTAATC  679

seq1  TAATAAAAATTATAATAACAAAAGGAATTGGAATGGAGGAACTTTGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATTATAATAACAAAAGGAATTGGAATGGAGGAACTTTGCATG  729

seq1  GGTAGACAATAGTATTTTCAGAAGGAATAAGTTATCAAATGAAAATCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACAATAGTATTTTCAGAAGGAATAAGTTATCAAATGAAAATCCCA  779

seq1  GTGCAGAGACCTTTGAAACAACACAGGCTGCTTCTGATTATCCACTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGACCTTTGAAACAACACAGGCTGCTTCTGATTATCCACTATAA  829

seq1  CTAGAAAAAACACCACAAACTCTAGCACATACTTAGGTCACTCAGGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAAACACCACAAACTCTAGCACATACTTAGGTCACTCAGGAACT  879

seq1  GACTGGGAAACTTTATCCCTGCTAGCTAGCTTATACTATTTAGACAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAAACTTTATCCCTGCTAGCTAGCTTATACTATTTAGACAATTT  929

seq1  GGGTAGATTACATCAATGGCTTTATCCATCCACAAACCCTGCATGCTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGATTACATCAATGGCTTTATCCATCCACAAACCCTGCATGCTATA  979

seq1  ATACTAACCAGACAATTAAGATGTGCCCTTGGTGCAATTATATGGTGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAACCAGACAATTAAGATGTGCCCTTGGTGCAATTATATGGTGGTT  1029

seq1  ATGGTATAATGAAGCAGTTTCTGTTTGGTTTGAGCTTTCGTTCACAGGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATAATGAAGCAGTTTCTGTTTGGTTTGAGCTTTCGTTCACAGGAG  1079

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1086

seq1: chr9_33273648_33274716
seq2: B6Ng01-035N15.g_67_1118

seq1  GAATTCACATGATCTGTCCATTTTAGTTCAGATTTCCCAACTAGTTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGATCTGTCCATTTTAGTTCAGATTTCCCAACTAGTTACTG  50

seq1  GTTCCTACAGTACATTTCTCAGTTGCATTTTTGCTCCAGAAAGTTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACAGTACATTTCTCAGTTGCATTTTTGCTCCAGAAAGTTATAGT  100

seq1  CCTCTCTGACTGCTGGTTTCTCTCCTCCTTTGGAATATGAGTTTGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGACTGCTGGTTTCTCTCCTCCTTTGGAATATGAGTTTGAGTGA  150

seq1  TGGAGACAAACAAAGCTTTGAATACTCTTTGTTGTTGTTTAACTTTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAAACAAAGCTTTGAATACTCTTTGTTGTTGTTTAACTTTTTAC  200

seq1  TTGTTAAAATGGAAAATAAACTTGTATATGCCAGACTAGAAACAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAATGGAAAATAAACTTGTATATGCCAGACTAGAAACAACAAAA  250

seq1  TGAGTTTTTTTTAAAAATTTCTCTCTGTTTTCCCAATGATTCTGTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTTTTAAAAATTTCTCTCTGTTTTCCCAATGATTCTGTATACA  300

seq1  ATTAATTTCATTTGTTTTGTTTTGTTACTGTTCCAAGATGATTTGCGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCATTTGTTTTGTTTTGTTACTGTTCCAAGATGATTTGCGGAT  350

seq1  AGACTGCTTTTCCCAACGATATATGCCAGTAAAATTTAAAAGATGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTTTTCCCAACGATATATGCCAGTAAAATTTAAAAGATGATACA  400

seq1  TATTGTATGTGAAGAGGAAAATGAGCACCTTTCTAATCTTGCTTCTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATGTGAAGAGGAAAATGAGCACCTTTCTAATCTTGCTTCTGTTA  450

seq1  GTTTCTTTTGGAGAGCAAGGCCTAGTGGTGCATGCTTTTAATACCAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTGGAGAGCAAGGCCTAGTGGTGCATGCTTTTAATACCAGCAC  500

seq1  TTGGGAAATAGAGGCAGTAAGAGTTCAAGGCCAGCCTGGTCTACATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATAGAGGCAGTAAGAGTTCAAGGCCAGCCTGGTCTACATAGTG  550

seq1  AGACCCTGTCTCAATAATAATAATAATAATAATAATAATAATAATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGTCTCAATAATAATAATAATAATAATAATAATAATAATAATAA  600

seq1  TAATAATGATTATGATACTTCCTACCCCCTCTCACCCCTTTACTTTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGATTATGATACTTCCTACCCCCTCTCACCCCTTTACTTTCACC  650

seq1  -TTTAATGTCATTATGACTTCAAAGAATATTTGTTTGTTCTTTCCATTTT  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTCATTATGACTTCAAAGAATATTTGTTTGTTCTTTCCATTTT  700

seq1  TACCCAGAGAAGCAATGTATTTGTGAGTTAGGATGCTGTATCTCTACTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAGAAGCAATGTATTTGTGAGTTAGGATGCTGTATCTCTACTTC  750

seq1  CCAAACAAATTAGCATACTCTTTACATCCACTTCTATGAATAACTCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAATTAGCATACTCTTTACATCCACTTCTATGAATAACTCAAAT  800

seq1  ATGTGCATTCACATGTGCACGCACATGTGTTTGCATGTATGTGTGTGCAT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTGCATTCACATGTGCACGCACATGTG-TTGCATGTATGTGTGTGCAT  849

seq1  GTGTATGTGCACATGGGTATTTGCATGTATGTGTACATGAGTTAACCTCA  899
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GTGTATGTGCACATGGGTA-TTGCATGTATGTGTACATGAGTT-ACCTCA  897

seq1  ACTGTCACTGTGATAAGATCTAAATTTTCCTGGGTGATGTGCATCTGGGC  949
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  ACTGTCACTGTGAT-AGATCTAAATTTT-CTGGGTGATGTGCATCTGGGC  945

seq1  ATGTCTGTGATAGGTTGTTTTGATTAGATCAAGTGAGGTGGGAAGACTGA  999
      |||||||||||| |||| ||||| |||||||||||||  ||| |||||||
seq2  ATGTCTGTGATA-GTTG-TTTGA-TAGATCAAGTGAG--GGGGAGACTGA  990

seq1  TTTCTTGACACCATTCCCTAAGCTGGGACCCTAAATTATATAACACGGAG  1049
      |||||||| ||| |||    |||| ||| |||||  || |||||||||||
seq2  TTTCTTGA-ACCTTTC---TAGCT-GGAACCTAATATA-ATAACACGGAG  1034

seq1  AAAATGAATTGTGGGCATGC  1069
      |||||||| ||| |||||||
seq2  AAAATGAA-TGT-GGCATGC  1052