BAC Information

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BAC

Clone NameB6Ng01-036G15
Chromosome9 (Build37)
Map Location 71,776,196 - 71,891,297
singlet/doubletdoublet
Overlap geneTcf12
Upstream geneLipc, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036G15.bB6Ng01-036G15.g
ACCDH864596DH864597
length9911,048
definitionDH864596|Mus musculus domesticus DNA, BAC clone: B6Ng01-036G15, 5' end.DH864597|Mus musculus domesticus DNA, BAC clone: B6Ng01-036G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,890,626 - 71,891,297)(71,776,196 - 71,777,257)
sequence
gaattcatctagtatttcattatagtttcattgtatatttgcatttccct
gtatgtaattaataaagtgttttttgtctcagtaaatatatatatacata
tatgtttcatttgtttgataaaatatgcacttgaagtatatgtgctcaat
gttttgtgatttcagagatgtatgcatgtctaatcaggaccatgtccatc
cttcccaagagcttccttatacccttttcagttaattttccttaacaagc
ctctcttgaagccactcatttgatttctgtcactggaaattagtttagcc
tgtcctagaagtgatttcatggtaatggagtagtatagtgcaatctcttt
tctggggcttctttggaataatgatcttcaagagtcatctaaccttttgc
atatttctgaaatatttgacttttagtcctaaatcacagtttttatatac
ctgtggttatccatttatttcttgatataattttttctatttatgaatga
actagtgtacaatttttgtataaactttttttggtttttagtttttgttt
gttatgttttttcctttctttttctttttcttttttaagattcctttatg
taacagccctggctgtcctggaactcactttgtagaccaggctgtcctgg
aactcacagagatccatctgcatctgcttcccaagtgctgggattaaagg
tgtgtgccactactgcctagctccatgtatttttagtttttttgaaattt
atttttttggggggtaatatctaggactaaaatattgggttacactataa
gcatctggataatattgtcagaaaatgggaaactaccttccaagtggtgg
tacatttctgcactcctgtaagaagtgtttggtgttgctttgcattgtct
gaaacactttgccagtctctgacagacttccctgtcccagtgtatcacaa
ctcattgtggctttatcacatttctctgggaactgatgctg
tgttgggttgtaattctcaatggcttaaagtaagactagatgaagagaga
agagacaagagtagcaaacccctggagggagaggtgacaatgaaagagtc
tgaatctaaaggatatgacagactcaagatatattagctcaaatcaagaa
tagaaaacacatcacatgttctcctagtattcagcaggagtacatgcaca
gtgtgcacacaatgaaaagtgaaacgtttaccaatgaatcttgacaaata
tgtaacacgcagtgtacgcttatctaccttttgtttgtgtctctactttt
tcaaaattaaagccttgagaagataataaacaccaccaaagactcactag
gagcatttccaatgtacatctcattaaattttccagcatcttatgtaggt
caggtgagaacgcctcttcctttgtacaagattcccaacatgaaggactc
tcactgacatatacaaagagattaacttgaaaacaaatctaagtaattcc
taaatgactctgtggactaaatcctaaagctgaattatctatggaggaca
aactaggagactgcaaatgtacacagactatatgttgaaagacaggacaa
acttcttacagggacaaatattccttgctactaactagtgttggtaagac
ttttccttcactatagacaaacctggacaggaaatgtcctatcttcttgt
ttcaccatgattactgatgccgataacaacagaggctgtgtttcctctca
gctggctgaatcatataatacctgtttcctcagtgtgtacactctgctat
gatgtacagggaagacaaagaaacaaactgctcttcaggattgctaactt
agcctgctgactacacagacccattctacactgaaagaaagaaataacaa
gtttatgacacaatatcatctgaaaggacttggacaataataaggcatgc
ccattaatcatgggaatagactaaaaagagagcaaattataaaggcttaa
tctgataagtctaccataaaatcatatagtttccctggtacttaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71890626_71891297
seq2: B6Ng01-036G15.b_46_717 (reverse)

seq1  TGCAGATGGATCTCTGTGAGTTCCAGGACAGCCTGGTCTACAAAGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGGATCTCTGTGAGTTCCAGGACAGCCTGGTCTACAAAGTGAGT  50

seq1  TCCAGGACAGCCAGGGCTGTTACATAAAGGAATCTTAAAAAAGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTGTTACATAAAGGAATCTTAAAAAAGAAAAAGA  100

seq1  AAAAGAAAGGAAAAAACATAACAAACAAAAACTAAAAACCAAAAAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGGAAAAAACATAACAAACAAAAACTAAAAACCAAAAAAAGTT  150

seq1  TATACAAAAATTGTACACTAGTTCATTCATAAATAGAAAAAATTATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAAATTGTACACTAGTTCATTCATAAATAGAAAAAATTATATCA  200

seq1  AGAAATAAATGGATAACCACAGGTATATAAAAACTGTGATTTAGGACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATGGATAACCACAGGTATATAAAAACTGTGATTTAGGACTAA  250

seq1  AAGTCAAATATTTCAGAAATATGCAAAAGGTTAGATGACTCTTGAAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAATATTTCAGAAATATGCAAAAGGTTAGATGACTCTTGAAGATC  300

seq1  ATTATTCCAAAGAAGCCCCAGAAAAGAGATTGCACTATACTACTCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCAAAGAAGCCCCAGAAAAGAGATTGCACTATACTACTCCATTA  350

seq1  CCATGAAATCACTTCTAGGACAGGCTAAACTAATTTCCAGTGACAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATCACTTCTAGGACAGGCTAAACTAATTTCCAGTGACAGAAAT  400

seq1  CAAATGAGTGGCTTCAAGAGAGGCTTGTTAAGGAAAATTAACTGAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTGGCTTCAAGAGAGGCTTGTTAAGGAAAATTAACTGAAAAGG  450

seq1  GTATAAGGAAGCTCTTGGGAAGGATGGACATGGTCCTGATTAGACATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGAAGCTCTTGGGAAGGATGGACATGGTCCTGATTAGACATGCA  500

seq1  TACATCTCTGAAATCACAAAACATTGAGCACATATACTTCAAGTGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCTGAAATCACAAAACATTGAGCACATATACTTCAAGTGCATAT  550

seq1  TTTATCAAACAAATGAAACATATATGTATATATATATTTACTGAGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAACAAATGAAACATATATGTATATATATATTTACTGAGACAAA  600

seq1  AAACACTTTATTAATTACATACAGGGAAATGCAAATATACAATGAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTTATTAATTACATACAGGGAAATGCAAATATACAATGAAACTA  650

seq1  TAATGAAATACTAGATGAATTC  672
      ||||||||||||||||||||||
seq2  TAATGAAATACTAGATGAATTC  672

seq1: chr9_71776196_71777257
seq2: B6Ng01-036G15.g_78_1125

seq1  TGTTGGGTTGTAATTCTCAATGGCTTAAAGTAAGACTAGATGAAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTTGTAATTCTCAATGGCTTAAAGTAAGACTAGATGAAGAGAGA  50

seq1  AGAGACAAGAGTAGCAAACCCCTGGAGGGAGAGGTGACAATGAAAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGAGTAGCAAACCCCTGGAGGGAGAGGTGACAATGAAAGAGTC  100

seq1  TGAATCTAAAGGATATGACAGACTCAAGATATATTAGCTCAAATCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTAAAGGATATGACAGACTCAAGATATATTAGCTCAAATCAAGAA  150

seq1  TAGAAAACACATCACATGTTCTCCTAGTATTCAGCAGGAGTACATGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACACATCACATGTTCTCCTAGTATTCAGCAGGAGTACATGCACA  200

seq1  GTGTGCACACAATGAAAAGTGAAACGTTTACCAATGAATCTTGACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACACAATGAAAAGTGAAACGTTTACCAATGAATCTTGACAAATA  250

seq1  TGTAACACGCAGTGTACGCTTATCTACCTTTTGTTTGTGTCTCTACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACGCAGTGTACGCTTATCTACCTTTTGTTTGTGTCTCTACTTTT  300

seq1  TCAAAATTAAAGCCTTGAGAAGATAATAAACACCACCAAAGACTCACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTAAAGCCTTGAGAAGATAATAAACACCACCAAAGACTCACTAG  350

seq1  GAGCATTTCCAATGTACATCTCATTAAATTTTCCAGCATCTTATGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTCCAATGTACATCTCATTAAATTTTCCAGCATCTTATGTAGGT  400

seq1  CAGGTGAGAACGCCTCTTCCTTTGTACAAGATTCCCAACATGAAGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGAACGCCTCTTCCTTTGTACAAGATTCCCAACATGAAGGACTC  450

seq1  TCACTGACATATACAAAGAGATTAACTTGAAAACAAATCTAAGTAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACATATACAAAGAGATTAACTTGAAAACAAATCTAAGTAATTCC  500

seq1  TAAATGACTCTGTGGACTAAATCCTAAAGCTGAATTATCTATGGAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACTCTGTGGACTAAATCCTAAAGCTGAATTATCTATGGAGGACA  550

seq1  AACTAGGAGACTGCAAATGTACACAGACTATATGTTGAAAGACAGGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAGACTGCAAATGTACACAGACTATATGTTGAAAGACAGGACAA  600

seq1  ACTTCTTACAGGGACAAATATTCCTTGCTACTAACTAGTGTTGGTAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTACAGGGACAAATATTCCTTGCTACTAACTAGTGTTGGTAAGAC  650

seq1  TTTTCCTTCACTATAGACAAACCTGGACAGGAAATGTCCTATCTTCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCACTATAGACAAACCTGGACAGGAAATGTCCTATCTTCTTGT  700

seq1  TTCACCATGATTACTGATGCCGATAACAACAGAGGCTGTGTTTCCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATGATTACTGATGCCGATAACAACAGAGGCTGTGTTTCCTCTCA  750

seq1  GCTGGCTGAATCATATAATACCTGTTTCCTCAGTGTGTACACTCTGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGAATCATATAATACCTGTTTCCTCAGTGTGTACACTCTGCTAT  800

seq1  GATGTACAAGGGAAGACAAAGAAACACACTGCTCTTCA-GATTGCTAACT  849
      ||||||| |||||||||||||||||| ||||||||||| |||||||||||
seq2  GATGTAC-AGGGAAGACAAAGAAACAAACTGCTCTTCAGGATTGCTAACT  849

seq1  TAGCCTGCTGACTACACAGACCCATTCTACACTGAAAGAAAGAAATAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCTGACTACACAGACCCATTCTACACTGAAAGAAAGAAATAACA  899

seq1  AGTTTATGACACAATATCATCTGAAAGGACTT-GACAATAAATAAAGCCA  948
      |||||||||||||||||||||||||||||||| ||||||||   ||| ||
seq2  AGTTTATGACACAATATCATCTGAAAGGACTTGGACAATAA--TAAGGCA  947

seq1  TGCCCAATAAATCAATGGGAAATAAGACTAAAAAAGAGAGCAAAATTATA  998
      ||||| || |||| |||||||   ||||| ||||||||||| ||||||| 
seq2  TGCCC-ATTAATC-ATGGGAA--TAGACT-AAAAAGAGAGC-AAATTAT-  990

seq1  AAAGCCTTATATCTTGATAAGTCTACCAATAAAATCATATAGTTTTCCCT  1048
      |||| |||| ||| ||||||||||||| |||||||||||||| |||||||
seq2  AAAGGCTTA-ATC-TGATAAGTCTACC-ATAAAATCATATAG-TTTCCCT  1036

seq1  TGTTACCTTAATTG  1062
       ||   ||||||||
seq2  GGT--ACTTAATTG  1048