BAC Information

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BAC

Clone NameB6Ng01-036I20
Chromosome9 (Build37)
Map Location 51,059,742 - 51,060,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1
Downstream geneGm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036I20.b
ACCDH864692
length1,114
definitionDH864692|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcgagtactttgatggacattttttgaagggaagcagaattgc
tgtgtgatagaacacccaaatgaaaaaaaaatattaatagacaatgacaa
atgcttctccaaactggttttaaaagctgataacactgaaaggattatta
ccccatgtctggggaaaatcagggtctctcgaaagaggtgagcttcctgt
tctggaggtggccatactgaaatctgagctgctgcccagctcaggaagaa
gcaattaagtgagctatagcaggtgttcctgctttctgctttctgttttc
tgcttcctggagtcacttcttgagtgtgatacgggtcctgagaccacctt
ctctcaagacttggtgggatctacaagcttcagaaaggagacggagcagc
cagccagcagccagtcccgaggttggggctagggctcagcagcactgaca
gagccaagccaggctcctttctagcagcctggttagaagaagccagcccg
agccaagaacccgaccacaggtagagtctgcagggaaagcacccacagtc
acagaggcggagtcctgcacatttcggctacatctcccgggaacaagtct
ggactggcttccatgttattttcttcctcctttttggctttcaagttata
atagatgaatttcagaattaagaaaaccctctagcaaatatgcaaatggt
tttaatttgaggtgtaacagacaggtggaattaattctctaaagtgagcg
cttacttcttcccttacaactaagagctcaaaataaagttgttttttttt
tttttcatatagaaatggagccttttgcatctggtggtcattgttggcag
tttgagaaggaagtagtcaaggagaaaaacttaataagaaacttttgttt
tgtttgcttttgatccccacaccagttcctatgtgtgtctataggatgac
gaggcttgtggctcagagggagttgagtcagtcctagccattagaggatg
acaccccagccctgcctcccagagcctattttggtattcctgtccactat
cctcctccgtagagggacactccgtttctgcccaggaatggaccctgacc
acgtaactgccatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_51059742_51060866
seq2: B6Ng01-036I20.b_48_1161

seq1  GAATTCCTCGAGTACTTTGATGGACATTTTTTGAAGGGAAGCAGAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGAGTACTTTGATGGACATTTTTTGAAGGGAAGCAGAATTGC  50

seq1  TGTGTGATAGAACACCCAAATGAAAAAAAAATATTAATAGACAATGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATAGAACACCCAAATGAAAAAAAAATATTAATAGACAATGACAA  100

seq1  ATGCTTCTCCAAACTGGTTTTAAAAGCTGATAACACTGAAAGGATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTCCAAACTGGTTTTAAAAGCTGATAACACTGAAAGGATTATTA  150

seq1  CCCCATGTCTGGGGAAAATCAGGGTCTCTCGAAAGAGGTGAGCTTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTCTGGGGAAAATCAGGGTCTCTCGAAAGAGGTGAGCTTCCTGT  200

seq1  TCTGGAGGTGGCCATACTGAAATCTGAGCTGCTGCCCAGCTCAGGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGTGGCCATACTGAAATCTGAGCTGCTGCCCAGCTCAGGAAGAA  250

seq1  GCAATTAAGTGAGCTATAGCAGGTGTTCCTGCTTTCTGCTTTCTGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAAGTGAGCTATAGCAGGTGTTCCTGCTTTCTGCTTTCTGTTTTC  300

seq1  TGCTTCCTGGAGTCACTTCTTGAGTGTGATACGGGTCCTGAGACCACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGGAGTCACTTCTTGAGTGTGATACGGGTCCTGAGACCACCTT  350

seq1  CTCTCAAGACTTGGTGGGATCTACAAGCTTCAGAAAGGAGACGGAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGACTTGGTGGGATCTACAAGCTTCAGAAAGGAGACGGAGCAGC  400

seq1  CAGCCAGCAGCCAGTCCCGAGGTTGGGGCTAGGGCTCAGCAGCACTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCAGCCAGTCCCGAGGTTGGGGCTAGGGCTCAGCAGCACTGACA  450

seq1  GAGCCAAGCCAGGCTCCTTTCTAGCAGCCTGGTTAGAAGAAGCCAGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGCCAGGCTCCTTTCTAGCAGCCTGGTTAGAAGAAGCCAGCCCG  500

seq1  AGCCAAGAACCCGACCACAGGTAGAGTCTGCAGGGAAAGCACCCACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAACCCGACCACAGGTAGAGTCTGCAGGGAAAGCACCCACAGTC  550

seq1  ACAGAGGCGGAGTCCTGCACATTTCGGCTACATCTCCCGGGAACAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCGGAGTCCTGCACATTTCGGCTACATCTCCCGGGAACAAGTCT  600

seq1  GGACTGGCTTCCATGTTATTTTCTTCCTCCTTTTTGGCTTTCAAGTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCTTCCATGTTATTTTCTTCCTCCTTTTTGGCTTTCAAGTTATA  650

seq1  ATAGATGAATTTCAGAATTAAGAAAACCCTCTAGCAAATATGCAAATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAATTTCAGAATTAAGAAAACCCTCTAGCAAATATGCAAATGGT  700

seq1  TTTAATTTGAGGTGTAACAGACAGGTGGAATTAATTCTCTAAAGTGAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGAGGTGTAACAGACAGGTGGAATTAATTCTCTAAAGTGAGCG  750

seq1  CTTACTTCTTCCCTTACAACTAAGAGCTCAAAATAAAGTTGTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTTCCCTTACAACTAAGAGCTCAAAATAAAGTTGTTTTTTTTT  800

seq1  TTTTTCATATAGAAATGGAGCCTTTTGCATCTGGTGGTCATTGTTGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATATAGAAATGGAGCCTTTTGCATCTGGTGGTCATTGTTGGCAG  850

seq1  TTGGAGAAGGAAGTAGTCAAGGAGAAAAACTTAATAAGAAACTTTTGTTT  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAGGAAGTAGTCAAGGAGAAAAACTTAATAAGAAACTTTTGTTT  900

seq1  GTTTTGCTTTTGAATCTCACACCAGTTCCTATGTGTGTCTATTAGGAATG  950
        |||||||||||  | |||||||||||||||||||||||| |||| |||
seq2  TGTTTGCTTTTGATCCCCACACCAGTTCCTATGTGTGTCTA-TAGG-ATG  948

seq1  AACGAGGC-TGTGGCTCAGAGGGGAGTTGAGTCAGTCCTAGGCAATAGAG  999
       ||||||| ||||||||||| |||||||||||||||||||| || |||||
seq2  -ACGAGGCTTGTGGCTCAGA-GGGAGTTGAGTCAGTCCTAGCCATTAGAG  996

seq1  GAAGACAACCCCAGCCCTGGCTCCCCAGAGCTTATTTTGGTATTTCCTTG  1049
      || ||| |||||||||||| || |||||||| ||||||||||||  | ||
seq2  GATGAC-ACCCCAGCCCTGCCT-CCCAGAGCCTATTTTGGTATT--CCTG  1042

seq1  TCTATTTATCTTTCTTCTGTTTGGAGGGACACTCTG-TTCTGCCAGGGGA  1098
      || |  ||||   || ||   | ||||||||||| | |||||||   |||
seq2  TCCA-CTATC---CTCCTCCGTAGAGGGACACTCCGTTTCTGCC-CAGGA  1087

seq1  ATGGACCCTGACCACGTAACTGGCATG  1125
      |||||||||||||||||||||| ||||
seq2  ATGGACCCTGACCACGTAACTGCCATG  1114