BAC Information

Click to search

BAC

Clone NameB6Ng01-036K16
Chromosome9 (Build37)
Map Location 52,647,024 - 52,779,807
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036K16.bB6Ng01-036K16.g
ACCDH864764DH864765
length1,047800
definitionDH864764|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K16, 5' end.DH864765|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,778,758 - 52,779,807)(52,647,024 - 52,647,731)
sequence
gaattcttagtgtaggcgaggaaaggctaagtatcttctaagtgttctta
tataacctcccaaactcccattgatgatactgttatcatctctgttttat
aggtgaggagcagaaccttcgcttaatctgagtgaattcatgcaggtgct
acatgtgcaaattgggtttggaattaaggtttcttgatttggaagcctat
gaatttaagtgcgcagtagtgtttttcaaaccatgctttatatagcactg
ggattctataaacatgcctccgaaacagctgcaatggcagaaacagggag
agagagtgacggggggagacagactctctcctagtacccatacctttgaa
tcttttacaattgagacttatacacatttttttcccttgcagaaatggtt
gaaatgtatctgaaaccatggctttgctcaataatggtatttaagagccg
ttttctctgtcaagaactcttccttttccatttattccgattctcaggct
catttccacaaacaccaagggaacagttaactgacatccatagttagcac
tttcggctcacatcattggtagttcttgtgtaggaaatcaaagcatgtac
cgagtttacttagctgtctcctgaagtatatgaaacagagtgggcgggta
taatagaatactccatctaagcctgtctgtttcttatctcagatattaga
tttctgggaatggcgatttattgagtgggaaagctgcatagggtgctagg
tgtggggtattaaaggatactgacagatctgagagacgtggacaaaataa
aagaataacaaggaagcagagagaggaaatgcagatgaaatttatggaca
ggttccctaagcatttcaacaaattagctggggattggattcagcatgga
gttcaatttatctgggtgtctacccaggatcttgcaacacagctcaaata
ctctcaccatctgggcctacctccttttacccttcttcacccaatcaaac
tttggtttggttctggcccccaggacatctgcctaaccatgtattat
gaattctgcttgccttcccttcttgcccatcttcattcctcgtgccaggc
ccagaaaccaggaacactctcgatcagggacctccagtggccacatctgg
ctgggactcaggtagaccatcagatgttcactctgttctccaggatctgg
cctctctcaccctcagcccattacgcagcctccctccttgcaggtgcccc
tactccactccatgagctggtattaatagtgaacttaaaactgagtttag
aagtgctgctttctcttctatttttagaaaagcttagaaaagatgggtag
ttgttctttttataaatgttttataaaattctcccaggataacatctggc
cttgggcttttctctgatgggagtattttgatgactgattcagtctcctt
tcctgtaatagaccaaacagaacttctgcttatttagaattcaacctgga
tacagtgtaagtttctagaaatgcatccatttcttacagatcatccattt
tggcatataattattcaaagcagtgtcacatttgaatcgtatctctgaca
tacctgtgatgcctgctgcttctttcagtttgaattttattcatgagtaa
cctctctctttttgtggttactctagatatttttgtgggttttttttttt
ttttttggagacagggttttcttctgtatagccctgactgtcctggaact
cactttgtagaccaggctgggcctcaaactcagaaatctgcctgcctctg
gctcccgagtgctgggattaaaggcatgtgccaccactgcctggcaaaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52778758_52779807
seq2: B6Ng01-036K16.b_45_1089 (reverse)

seq1  AATACATGGTTAGGCAGATTGCTCCTGAGTGGCCAGAAACAAAACAAAGT  50
      |||||||||||||||||||   ||||| | |||||||| |||| ||||||
seq2  AATACATGGTTAGGCAGAT--GTCCTG-GGGGCCAGAACCAAACCAAAGT  47

seq1  CTGAATTGGGTGAAGAAGGATAAAAAGGAGGTA-GACCAGATGGT-AGAG  98
       || ||||||||||||||| | ||||||||||| | ||||||||| ||||
seq2  TTG-ATTGGGTGAAGAAGGGT-AAAAGGAGGTAGGCCCAGATGGTGAGAG  95

seq1  TTATGTGAGCTGTGTTGC-AGATCCTGGGTAGACATCCAAGATAAAATGG  147
       ||| ||||||||||||| |||||||||||||||| || ||||||| || 
seq2  -TATTTGAGCTGTGTTGCAAGATCCTGGGTAGACA-CCCAGATAAATTGA  143

seq1  ACTTCATGCTGAATCAAATCCCCAGCTAATTTTGTTGAAATGCTTAGGGA  197
      ||| ||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  ACTCCATGCTGAATCCAATCCCCAGCTAA-TTTGTTGAAATGCTTAGGGA  192

seq1  ACCTGTCCATAAAATTTCATCTTGCATTTCCTCTCTCTGCTTCCTTTGTT  247
      |||||||||| |||||||||| |||||||||||||||||||||| |||||
seq2  ACCTGTCCAT-AAATTTCATC-TGCATTTCCTCTCTCTGCTTCC-TTGTT  239

seq1  ATTCTTTTATTTTGTCCACGTCTCTCAGATCTGTCAGTATCC-TTAATAC  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCTTTTATTTTGTCCACGTCTCTCAGATCTGTCAGTATCCTTTAATAC  289

seq1  CCCACAACCTAGCACCCTATGCAGCTTT-CCACTCAATAAATCGCCATTC  345
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCAC-ACCTAGCACCCTATGCAGCTTTCCCACTCAATAAATCGCCATTC  338

seq1  CCAG-AATCTAATATCTGAGATAAGAAACAGACAGGCTTAGATGGAGTAT  394
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCTAATATCTGAGATAAGAAACAGACAGGCTTAGATGGAGTAT  388

seq1  TCTATTATA-CCGCCCACTCTGTTTCATATACTTCAGGAGACAGCTAAGT  443
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATACCCGCCCACTCTGTTTCATATACTTCAGGAGACAGCTAAGT  438

seq1  AAACTCGGTACATGCTTTGATTTCCTACACAAGAACTACCAATGATGTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGTACATGCTTTGATTTCCTACACAAGAACTACCAATGATGTGA  488

seq1  GCCGAAAGTGCTAACTATGGATGTCAGTTAACTGTTCCCTTGGTGTTTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAAGTGCTAACTATGGATGTCAGTTAACTGTTCCCTTGGTGTTTGT  538

seq1  GGAAATGAGCCTGAGAATCGGAATAAATGGAAAAGGAAGAGTTCTTGACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGCCTGAGAATCGGAATAAATGGAAAAGGAAGAGTTCTTGACA  588

seq1  GAGAAAACGGCTCTTAAATACCATTATTGAGCAAAGCCATGGTTTCAGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACGGCTCTTAAATACCATTATTGAGCAAAGCCATGGTTTCAGAT  638

seq1  ACATTTCAACCATTTCTGCAAGGGAAAAAAATGTGTATAAGTCTCAATTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAACCATTTCTGCAAGGGAAAAAAATGTGTATAAGTCTCAATTG  688

seq1  TAAAAGATTCAAAGGTATGGGTACTAGGAGAGAGTCTGTCTCCCCCCGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTCAAAGGTATGGGTACTAGGAGAGAGTCTGTCTCCCCCCGTC  738

seq1  ACTCTCTCTCCCTGTTTCTGCCATTGCAGCTGTTTCGGAGGCATGTTTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTCCCTGTTTCTGCCATTGCAGCTGTTTCGGAGGCATGTTTAT  788

seq1  AGAATCCCAGTGCTATATAAAGCATGGTTTGAAAAACACTACTGCGCACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAGTGCTATATAAAGCATGGTTTGAAAAACACTACTGCGCACT  838

seq1  TAAATTCATAGGCTTCCAAATCAAGAAACCTTAATTCCAAACCCAATTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATAGGCTTCCAAATCAAGAAACCTTAATTCCAAACCCAATTTG  888

seq1  CACATGTAGCACCTGCATGAATTCACTCAGATTAAGCGAAGGTTCTGCTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGCACCTGCATGAATTCACTCAGATTAAGCGAAGGTTCTGCTC  938

seq1  CTCACCTATAAAACAGAGATGATAACAGTATCATCAATGGGAGTTTGGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTATAAAACAGAGATGATAACAGTATCATCAATGGGAGTTTGGGA  988

seq1  GGTTATATAAGAACACTTAGAAGATACTTAGCCTTTCCTCGCCTACACTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATAAGAACACTTAGAAGATACTTAGCCTTTCCTCGCCTACACTA  1038

seq1  AGAATTC  1050
      |||||||
seq2  AGAATTC  1045

seq1: chr9_52647024_52647731
seq2: B6Ng01-036K16.g_69_781

seq1  GAATTCTGCTTGCCTTCCCTTCTTGCCCATCTTCATTCCTCGTGCCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTGCCTTCCCTTCTTGCCCATCTTCATTCCTCGTGCCAGGC  50

seq1  CCAGAAACCAGGAACACTCTCGATCAGGGACCTCCAGTGGCCACATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACCAGGAACACTCTCGATCAGGGACCTCCAGTGGCCACATCTGG  100

seq1  CTGGGACTCAGGTAGACCATCAGATGTTCACTCTGTTCTCCAGGATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTCAGGTAGACCATCAGATGTTCACTCTGTTCTCCAGGATCTGG  150

seq1  CCTCTCTCACCCTCAGCCCATTACGCAGCCTCCCTCCTTGCAGGTGCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCACCCTCAGCCCATTACGCAGCCTCCCTCCTTGCAGGTGCCCC  200

seq1  TACTCCACTCCATGAGCTGGTATTAATAGTGAACTTAAAACTGAGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCACTCCATGAGCTGGTATTAATAGTGAACTTAAAACTGAGTTTAG  250

seq1  AAGTGCTGCTTTCTCTTCTATTTTTAGAAAAGCTTAGAAAAGATGGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGCTTTCTCTTCTATTTTTAGAAAAGCTTAGAAAAGATGGGTAG  300

seq1  TTGTTCTTTTTATAAATGTTTTATAAAATTCTCCCAGGATAACATCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTTATAAATGTTTTATAAAATTCTCCCAGGATAACATCTGGC  350

seq1  CTTGGGCTTTTCTCTGATGGGAGTATTTTGATGACTGATTCAGTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTTTCTCTGATGGGAGTATTTTGATGACTGATTCAGTCTCCTT  400

seq1  TCCTGTAATAGACCAAACAGAACTTCTGCTTATTTAGAATTCAACCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATAGACCAAACAGAACTTCTGCTTATTTAGAATTCAACCTGGA  450

seq1  TACAGTGTAAGTTTCTAGAAATGCATCCATTTCTTACAGATCATCCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTAAGTTTCTAGAAATGCATCCATTTCTTACAGATCATCCATTT  500

seq1  TGGCATATAATTATTCAAAGCAGTGTCACATTTGAATCGTATCTCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATAATTATTCAAAGCAGTGTCACATTTGAATCGTATCTCTGACA  550

seq1  TACCTGTGATGCCTGCTGCTTCTTTCAGTTTGAATTTTATTCATGAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGATGCCTGCTGCTTCTTTCAGTTTGAATTTTATTCATGAGTAA  600

seq1  CCTCTCTC-TTTTGTGGTTACTCTAGATATTTTTGTGGGTTTTTTTTTTT  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTTTTTGTGGTTACTCTAGATATTTTTGTGGGTTTTTTTTTTT  650

seq1  TTTTT--GAGACAGGGTTT--CTCTGTATAGCCCTGACTGTCCTGGAACT  695
      |||||  ||||||||||||   ||||||||||||||||||||||||||||
seq2  TTTTTTGGAGACAGGGTTTTCTTCTGTATAGCCCTGACTGTCCTGGAACT  700

seq1  CACTTTGTAGACC  708
      |||||||||||||
seq2  CACTTTGTAGACC  713