BAC Information

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BAC

Clone NameB6Ng01-037G06
Chromosome9 (Build37)
Map Location 65,968,222 - 66,099,984
singlet/doubletdoublet
Overlap geneSnx1, 5730536A07Rik, Dapk2
Upstream geneNope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037G06.bB6Ng01-037G06.g
ACCDH865269DH865270
length1,019617
definitionDH865269|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G06, 5' end.DH865270|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,968,222 - 65,969,248)(66,099,369 - 66,099,984)
sequence
gaattccaggacagccagggctatacagagaaaccccatcttgaaaccca
ccctgtctgcaaaatttaaattacactagtgtgtgtgtgtgcactgtagc
acatatgtggaggaaatcagagggtaactttcaggattaagttctctctt
gggtgcctagactcaaactcaggtggtcagggtcatcagcaagcaccttt
accttgctggtctactatctaagacttttaaacatttacatttataacat
tatattatactctcttgttaattttaaatatccgaaggcatatataaata
agtcttttgttgtttttgttttaagacagggtctgcaatataacagcctg
gccttgaacttgtgaccttttgcctcagcctcccaagggctgggactaca
ggcattcagcatttgcacatggctctgtaagtaatattagactaatcaaa
gacaaattgttcagcatgacttttctagtctcttgcctttccttctttat
cacatgctattttcccagacctttctctagtcaatagggtttagttcaca
agagagtaatgagaaaaaaagtcctaattggcttgacataaaaccaaata
aagacactgatatttgacgtttggccaaaatctaagccaatgacttcatt
ttctctatatttttttccctttcctttcagcataagaaaagctaccatag
tttctcccttttttatttgaaagagaaatctcctgtggttctggcaggct
gctgaaccgatgagcagataagactggaaggacaaatggggccagcttct
gttgtgagcccttttctttacataagcagaccagtgcagtcatgtgtggc
gtaaacctgcatgccttttccttcttctgaacataacattggggaattta
aaatgccaaggccctatccagtgccttgtttactgagagtcaaccctatc
taaaagaagcttcactaatattcaggatcaggcctatgtcaagattggat
tcaggctttcctaatgatt
gaattccttaatagttcaatatggaaactagaattctaaagaaacccaag
atttaagaagaaacgggtgacaaaatctctagctctggagttacagagaa
atggctgtttactctgcaccagactcagctaagttgttaaaaggcactga
ggccatggccctaccctcgtgattctaacttaatggacgtggtgggtgac
atgggtggggtctgggccatagtaggtattaaaagacctacagagttgag
gccctcagctgtactgcgggagtcacagtgtagctcccagcctgtgctgc
tgagaacaatccccggctgtggaacgctggccctggctatgggctgactt
ttaccgtgaaaatgccataaaaatggcattttccatgtgagctaccaagg
gcaagctctgggaagcactgggggctgagtatctaccaacttgctctgtg
taccaaagcagagcctaggaagcttgtacaaggcagcttactcccatcct
actttcttatggcaggaagtctgcagctcctatttttttttttctaataa
gaaaaacagttccaaaggttaaatacttgtccacggtcacatagactgaa
agaggcagcactggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65968222_65969248
seq2: B6Ng01-037G06.b_35_1053

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCCATCTTGAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCCATCTTGAAACCCA  50

seq1  CCCTGTCTGCAAAATTTAAATTACACTAGTGTGTGTGTGTGCACTGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTGCAAAATTTAAATTACACTAGTGTGTGTGTGTGCACTGTAGC  100

seq1  ACATATGTGGAGGAAATCAGAGGGTAACTTTCAGGATTAAGTTCTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGGAGGAAATCAGAGGGTAACTTTCAGGATTAAGTTCTCTCTT  150

seq1  GGGTGCCTAGACTCAAACTCAGGTGGTCAGGGTCATCAGCAAGCACCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTAGACTCAAACTCAGGTGGTCAGGGTCATCAGCAAGCACCTTT  200

seq1  ACCTTGCTGGTCTACTATCTAAGACTTTTAAACATTTACATTTATAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTGGTCTACTATCTAAGACTTTTAAACATTTACATTTATAACAT  250

seq1  TATATTATACTCTCTTGTTAATTTTAAATATCCGAAGGCATATATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATACTCTCTTGTTAATTTTAAATATCCGAAGGCATATATAAATA  300

seq1  AGTCTTTTGTTGTTTTTGTTTTAAGACAGGGTCTGCAATATAACAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTGTTGTTTTTGTTTTAAGACAGGGTCTGCAATATAACAGCCTG  350

seq1  GCCTTGAACTTGTGACCTTTTGCCTCAGCCTCCCAAGGGCTGGGACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTTGTGACCTTTTGCCTCAGCCTCCCAAGGGCTGGGACTACA  400

seq1  GGCATTCAGCATTTGCACATGGCTCTGTAAGTAATATTAGACTAATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCAGCATTTGCACATGGCTCTGTAAGTAATATTAGACTAATCAAA  450

seq1  GACAAATTGTTCAGCATGACTTTTCTAGTCTCTTGCCTTTCCTTCTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTGTTCAGCATGACTTTTCTAGTCTCTTGCCTTTCCTTCTTTAT  500

seq1  CACATGCTATTTTCCCAGACCTTTCTCTAGTCAATAGGGTTTAGTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTATTTTCCCAGACCTTTCTCTAGTCAATAGGGTTTAGTTCACA  550

seq1  AGAGAGTAATGAGAAAAAAAGTCCTAATTGGCTTGACATAAAACCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTAATGAGAAAAAAAGTCCTAATTGGCTTGACATAAAACCAAATA  600

seq1  AAGACACTGATATTTGACGTTTGGCCAAAATCTAAGCCAATGACTTCA-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGACACTGATATTTGACGTTTGGCCAAAATCTAAGCCAATGACTTCATT  650

seq1  TTCTCTATATTTTTT--CCCTTCCTTTCAGCATAAGAAAAGCTACCATAG  697
      |||||||||||||||  || ||||||||||||||||||||||||||||||
seq2  TTCTCTATATTTTTTTCCCTTTCCTTTCAGCATAAGAAAAGCTACCATAG  700

seq1  TTTCTCCC-TTTTTATTTGAAAGAGAAATCTCCTGTGGTTCTGGCAGGCT  746
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTTTTTTATTTGAAAGAGAAATCTCCTGTGGTTCTGGCAGGCT  750

seq1  GCTGAACCGATGAGCAGATAAGACTGG-AGGACAAA-GGGGCCAGCTTCT  794
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GCTGAACCGATGAGCAGATAAGACTGGAAGGACAAATGGGGCCAGCTTCT  800

seq1  GTTGTGAGCCC-TTTCCTTACAGTAAGCAGACCAGTGCAGTCATGTGTGG  843
      ||||||||||| |||| ||||| |||||||||||||||||||||||||||
seq2  GTTGTGAGCCCTTTTCTTTACA-TAAGCAGACCAGTGCAGTCATGTGTGG  849

seq1  CGTAAAAACCTGCATGCACTTTTCCATCTTCTGAACATAACATT-GGGAA  892
      |||  |||||||||||| ||||||| |||||||||||||||||| |||||
seq2  CGT--AAACCTGCATGC-CTTTTCCTTCTTCTGAACATAACATTGGGGAA  896

seq1  TTTAAAATGCCAATGGCTCTAATCCAGTGCCTTGTTTTACTGAGAGATCA  942
      ||||||||||||| ||| || ||||||||||||| ||||||||||| |||
seq2  TTTAAAATGCCAA-GGCCCT-ATCCAGTGCCTTG-TTTACTGAGAG-TCA  942

seq1  ACCCTATTCTAGAAGAAAGCTTCAACTAAATATCAGGATTCAAGTCTATG  992
      |||||| |||| ||| ||||||| |||||   |||||| ||| | |||||
seq2  ACCCTA-TCTAAAAG-AAGCTTC-ACTAATATTCAGGA-TCAGGCCTATG  988

seq1  TCAAAGATTTGGATTCAGGCTTTTCATTAATGATT  1027
      || |||| ||||||||||||||| |  ||||||||
seq2  TC-AAGA-TTGGATTCAGGCTTTCC--TAATGATT  1019

seq1: chr9_66099369_66099984
seq2: B6Ng01-037G06.g_70_686 (reverse)

seq1  ACACCAGTGCTGCCTCTTTCAGTCTCTGTGACCGTGGACAAGTATTTAAC  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACACCAGTGCTGCCTCTTTCAGTCTATGTGACCGTGGACAAGTATTTAAC  50

seq1  CTTTGGACCTGTTTTTCTTATTAGAAAAAAAAAAATAGGAGCTGCAGACT  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAACTGTTTTTCTTATTAGAAAAAAAAAAATAGGAGCTGCAGACT  100

seq1  TCCTGCCATAAG-AAGTAGGATGGGAGTAAGCTGCCTTGTACAAGCTTCC  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCATAAGAAAGTAGGATGGGAGTAAGCTGCCTTGTACAAGCTTCC  150

seq1  TAGGCTCTGCTTTGGTACACAGAGCAAGTTGGTAGATACTCAGCCCCCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTGCTTTGGTACACAGAGCAAGTTGGTAGATACTCAGCCCCCAG  200

seq1  TGCTTCCCAGAGCTTGCCCTTGGTAGCTCACATGGAAAATGCCATTTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCAGAGCTTGCCCTTGGTAGCTCACATGGAAAATGCCATTTTTA  250

seq1  TGGCATTTTCACGGTAAAAGTCAGCCCATAGCCAGGGCCAGCGTTCCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTCACGGTAAAAGTCAGCCCATAGCCAGGGCCAGCGTTCCACA  300

seq1  GCCGGGGATTGTTCTCAGCAGCACAGGCTGGGAGCTACACTGTGACTCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGATTGTTCTCAGCAGCACAGGCTGGGAGCTACACTGTGACTCCC  350

seq1  GCAGTACAGCTGAGGGCCTCAACTCTGTAGGTCTTTTAATACCTACTATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACAGCTGAGGGCCTCAACTCTGTAGGTCTTTTAATACCTACTATG  400

seq1  GCCCAGACCCCACCCATGTCACCCACCACGTCCATTAAGTTAGAATCACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGACCCCACCCATGTCACCCACCACGTCCATTAAGTTAGAATCACG  450

seq1  AGGGTAGGGCCATGGCCTCAGTGCCTTTTAACAACTTAGCTGAGTCTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGGGCCATGGCCTCAGTGCCTTTTAACAACTTAGCTGAGTCTGGT  500

seq1  GCAGAGTAAACAGCCATTTCTCTGTAACTCCAGAGCTAGAGATTTTGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAAACAGCCATTTCTCTGTAACTCCAGAGCTAGAGATTTTGTCA  550

seq1  CCCGTTTCTTCTTAAATCTTGGGTTTCTTTAGAATTCTAGTTTCCATATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTCTTCTTAAATCTTGGGTTTCTTTAGAATTCTAGTTTCCATATT  600

seq1  GAACTATTAAGGAATTC  616
      |||||||||||||||||
seq2  GAACTATTAAGGAATTC  617