BAC Information

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BAC

Clone NameB6Ng01-037I11
Chromosome9 (Build37)
Map Location 73,755,418 - 73,862,571
singlet/doubletdoublet
Overlap geneUnc13c
Upstream genePrtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1, BC031353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037I11.bB6Ng01-037I11.g
ACCDH865365DH865366
length1,054929
definitionDH865365|Mus musculus domesticus DNA, BAC clone: B6Ng01-037I11, 5' end.DH865366|Mus musculus domesticus DNA, BAC clone: B6Ng01-037I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,861,511 - 73,862,571)(73,755,418 - 73,756,352)
sequence
gaattcccgcatagcttcctggtgggcagctataccgcattgcattggat
cattagacaggggcttccaggtcttatttttgtttttctacacataagag
cagtgtaacacttttatatgtttacgtctgcctgcattttgaattttttt
cattagaaatggagccatatatttaaatgtatgtgtatttgtattgaaac
agtgatttcataacattttactagtttacaatactgccagaaatttgtgt
gtgtgtgtttactgcacgcatgtgtctcaaaattctcacagaggaaaatt
gaatgtgactggttgttccctgttttctactctctcttctccttttctgg
tatctcagtgcaggaggcttattcctgtgtaaaggagaaagtccaaattc
agtctgtctatctacagagttactcgtcatattgattccttccccatcac
ctgagtggtcgataccgccatatgaggttatctctcacagcatccaatat
ccctgagcagccttctccttccatgttagtaaatggagctccacacatgt
gccaggatatgtgtgttcacatgtgtacacacgcacgcacacacacacac
acacacacacacacacacacacatgcacacacgtatcccgcaagagtaat
aaggataatgtttttggttttttttccaatgctcagtttgctccttctca
tctagctttgttctcatactcttcttgtaagttctacttcctagtcccag
accttgagcccaggccttgtgcttgttaggcaagtgctctgttagccagc
ttcactcctggttttctttttcttttttcctctgaggaacgatctcaccc
agttactttggctagcctggactcctctcccaattgccatgctcctgtgt
cagttcccaagacagaaatgttgtcatggtgcccagctctggtctccctt
cttcccttcatttctgtgggccattcttttcaactcccagcatgagcctg
gctctaaatccttcttcctctaaaggacctttcctcctcccaccaaggag
gaac
gaattctctggactgttctgttcttctagtgcccccaacttcagtataga
ttattaaacttctctaactccataaaggaaaagccatcttaagccagatg
ggtgggattacctcacactgtatgttccacagagagttgcaattgagcag
aaatgtgtagaagaggacctggctcagagcaagatggtgtgacgaagcct
caattgcactgcttttcttacagatgtaaaaactataactcaaagtgaga
gctgaccagatatcagaggcacactggaatgcttccccaaccctcctaca
tacaaacaggcatctaaagaacacagaagatatttctatgatagccctct
ctctgtgactttaggtaactttaggttcccctgaggctcttttctcaatg
catggattgaaggctttgaactggatagggaattctcccaccagatgaag
atagaaacctaagctaccttatctgtcttgaatgttctggtatggctcca
agcatctttggcctctgcccttcagcaccagtgagcaccccaggtcagcc
tatttttattatttatttatttatttatttatttatttatttatttattt
atttatgtttttttcgagtcagggtttctctgtgtagccctagctgtcct
ggaactcactttgtagaacaggctggactggaactcagaaatctgcctgc
ctctgtctcccaagtactgggattaaaggctccacaacttcccggcctgg
ggagcctcttaaacctttagcatgtgaggatttgcaagacatctgggtaa
tgttgaaacctctttatatattatacaaaaaaaaataaaacccaaaaaac
ataagatgtgaaatatgagaagcacacagaattcttggatggaaaggccg
tgttctgggaaacctgatataccatactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73861511_73862571
seq2: B6Ng01-037I11.b_46_1099 (reverse)

seq1  GTTCCTCACTGGTGAGAGGAGGAAAGGTCCTTTAGAGGAAGAAGGATTTT  50
      |||||||  ||||| ||||||||||||||||||||||||||||||| |||
seq2  GTTCCTCCTTGGTGGGAGGAGGAAAGGTCCTTTAGAGGAAGAAGGA-TTT  49

seq1  AGAGACCAGGCTCATGCTGGGAGTTGAAAAGGAATGGGCACAAAGAAATG  100
      |||| ||||||||||||||||||||||||| |||| ||| || |||||||
seq2  AGAG-CCAGGCTCATGCTGGGAGTTGAAAA-GAAT-GGCCCACAGAAATG  96

seq1  AAGAGAAGAAGGGAGACCAGGAGCCTGGGCACCATGAC-ACATTTCTGTC  149
      ||| ||||||||||||||| ||| |||||||||||||| |||||||||||
seq2  AAGGGAAGAAGGGAGACCA-GAG-CTGGGCACCATGACAACATTTCTGTC  144

seq1  TTGGGAAACTGACACAGGAGCATGGCAATTGGAAGAGGAGTCCAGGCTAG  199
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGG-AACTGACACAGGAGCATGGCAATTGGGAGAGGAGTCCAGGCTAG  193

seq1  CCAAAGTAACTGGGTGAGATCGTTCCTCAGAGGAAAAAAGAAAAAGAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAACTGGGTGAGATCGTTCCTCAGAGGAAAAAAGAAAAAGAAAA  243

seq1  CCAGGAGTGAAGCTGGCTAACAGAGCACTTGCCTAACAAGCACAAGGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTGAAGCTGGCTAACAGAGCACTTGCCTAACAAGCACAAGGCCT  293

seq1  GGGCTCAAGGTCTGGGACTAGGAAGTAGAACTTACAAGAAGAGTATGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAGGTCTGGGACTAGGAAGTAGAACTTACAAGAAGAGTATGAGA  343

seq1  ACAAAGCTAGATGAGAAGGAGCAAACTGAGCATTGGAAAAAAAAACCAAA  399
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAAAGCTAGATGAGAAGGAGCAAACTGAGCATTGG-AAAAAAAACCAAA  392

seq1  AACATTATCCTTATTACTCTTGCGGGATACGTGTGTGCATGTGTGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATCCTTATTACTCTTGCGGGATACGTGTGTGCATGTGTGTGTGT  442

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTACACATGTGAACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTACACATGTGAACAC  492

seq1  ACATATCCTGGCACATGTGTGGAGCTCCATTTACTAACATGGAAGGAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCTGGCACATGTGTGGAGCTCCATTTACTAACATGGAAGGAGAA  542

seq1  GGCTGCTCAGGGATATTGGATGCTGTGAGAGATAACCTCATATGGCGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCAGGGATATTGGATGCTGTGAGAGATAACCTCATATGGCGGTA  592

seq1  TCGACCACTCAGGTGATGGGGAAGGAATCAATATGACGAGTAACTCTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCACTCAGGTGATGGGGAAGGAATCAATATGACGAGTAACTCTGTA  642

seq1  GATAGACAGACTGAATTTGGACTTTCTCCTTTACACAGGAATAAGCCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAGACTGAATTTGGACTTTCTCCTTTACACAGGAATAAGCCTCC  692

seq1  TGCACTGAGATACCAGAAAAGGAGAAGAGAGAGTAGAAAACAGGGAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAGATACCAGAAAAGGAGAAGAGAGAGTAGAAAACAGGGAACAA  742

seq1  CCAGTCACATTCAATTTTCCTCTGTGAGAATTTTGAGACACATGCGTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACATTCAATTTTCCTCTGTGAGAATTTTGAGACACATGCGTGCA  792

seq1  GTAAACACACACACACAAATTTCTGGCAGTATTGTAAACTAGTAAAATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACACACACACAAATTTCTGGCAGTATTGTAAACTAGTAAAATGT  842

seq1  TATGAAATCACTGTTTCAATACAAATACACATACATTTAAATATATGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATCACTGTTTCAATACAAATACACATACATTTAAATATATGGCT  892

seq1  CCATTTCTAATGAAAAAAATTCAAAATGCAGGCAGACGTAAACATATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTAATGAAAAAAATTCAAAATGCAGGCAGACGTAAACATATAAA  942

seq1  AGTGTTACACTGCTCTTATGTGTAGAAAAACAAAAATAAGACCTGGAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACACTGCTCTTATGTGTAGAAAAACAAAAATAAGACCTGGAAGC  992

seq1  CCCTGTCTAATGATCCAATGCAATGCGGTATAGCTGCCCACCAGGAAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTAATGATCCAATGCAATGCGGTATAGCTGCCCACCAGGAAGCT  1042

seq1  ATGCGGGAATTC  1061
      ||||||||||||
seq2  ATGCGGGAATTC  1054

seq1: chr9_73755418_73756352
seq2: B6Ng01-037I11.g_69_997

seq1  GAATTCTCTGGACTGTTCTGTTCTTCTAGTGCCCCCAACTTCAGTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGACTGTTCTGTTCTTCTAGTGCCCCCAACTTCAGTATAGA  50

seq1  TTATTAAACTTCTCTAACTCCATAAAGGAAAAGCCATCTTAAGCCAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAACTTCTCTAACTCCATAAAGGAAAAGCCATCTTAAGCCAGATG  100

seq1  GGTGGGATTACCTCACACTGTATGTTCCACAGAGAGTTGCAATTGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATTACCTCACACTGTATGTTCCACAGAGAGTTGCAATTGAGCAG  150

seq1  AAATGTGTAGAAGAGGACCTGGCTCAGAGCAAGATGGTGTGACGAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTAGAAGAGGACCTGGCTCAGAGCAAGATGGTGTGACGAAGCCT  200

seq1  CAATTGCACTGCTTTTCTTACAGATGTAAAAACTATAACTCAAAGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCACTGCTTTTCTTACAGATGTAAAAACTATAACTCAAAGTGAGA  250

seq1  GCTGACCAGATATCAGAGGCACACTGGAATGCTTCCCCAACCCTCCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCAGATATCAGAGGCACACTGGAATGCTTCCCCAACCCTCCTACA  300

seq1  TACAAACAGGCATCTAAAGAACACAGAAGATATTTCTATGATAGCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAGGCATCTAAAGAACACAGAAGATATTTCTATGATAGCCCTCT  350

seq1  CTCTGTGACTTTAGGTAACTTTAGGTTCCCCTGAGGCTCTTTTCTCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGACTTTAGGTAACTTTAGGTTCCCCTGAGGCTCTTTTCTCAATG  400

seq1  CATGGATTGAAGGCTTTGAACTGGATAGGGAATTCTCCCACCAGATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTGAAGGCTTTGAACTGGATAGGGAATTCTCCCACCAGATGAAG  450

seq1  ATAGAAACCTAAGCTACCTTATCTGTCTTGAATGTTCTGGTATGGCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACCTAAGCTACCTTATCTGTCTTGAATGTTCTGGTATGGCTCCA  500

seq1  AGCATCTTTGGCCTCTGCCCTTCAGCACCAGTGAGCACCCCAGGTCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTGGCCTCTGCCCTTCAGCACCAGTGAGCACCCCAGGTCAGCC  550

seq1  TATTTTTATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  600

seq1  ATTTATGTTTTTTTCGAGTCAGGGTTTCTCTGTGTAGCCCTAGCTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTTTTTTCGAGTCAGGGTTTCTCTGTGTAGCCCTAGCTGTCCT  650

seq1  GGAACTCACTTTGTAGAACAGGCTGGACTGGAACTCAGAAATCTGCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGAACAGGCTGGACTGGAACTCAGAAATCTGCCTGC  700

seq1  CTCTGTCTCCCAAGTACTGGGATTAAAGGCTCCACAACTGCCCGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTGTCTCCCAAGTACTGGGATTAAAGGCTCCACAACTTCCCGGCCTGG  750

seq1  GGAGCCTCTTAAACC-TTAGCATGTGAGGATTTGCAGGACATCTGGGTAA  799
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  GGAGCCTCTTAAACCTTTAGCATGTGAGGATTTGCAAGACATCTGGGTAA  800

seq1  TGTTGAAACCTCTTTATATA-TATACAAAAAAAAAATAAAAACCCAAAAA  848
      |||||||||||||||||||| ||||||||||||||   ||||||||||||
seq2  TGTTGAAACCTCTTTATATATTATACAAAAAAAAA--TAAAACCCAAAAA  848

seq1  ACATAAGA-GTGAAATATGTAGAAGCAACACAGAATTCCTGGGATGGAAA  897
      |||||||| |||||||||| |||||| |||||||||| || |||||||||
seq2  ACATAAGATGTGAAATATG-AGAAGC-ACACAGAATT-CTTGGATGGAAA  895

seq1  GGCCAGTGTTCTTGGGAAACCTTGATAGTACCATACTG  935
      |||| |||||| ||||||||| ||||| ||||||||||
seq2  GGCC-GTGTTC-TGGGAAACC-TGATA-TACCATACTG  929