BAC Information

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BAC

Clone NameB6Ng01-037K12
Chromosome9 (Build37)
Map Location 45,556,350 - 45,698,039
singlet/doubletdoublet
Overlap geneDscaml1, Cep164, LOC640094, Bace1, Rnf214
Upstream geneArcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream genePcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037K12.bB6Ng01-037K12.g
ACCDH865450DH865451
length92491
definitionDH865450|Mus musculus domesticus DNA, BAC clone: B6Ng01-037K12, 5' end.DH865451|Mus musculus domesticus DNA, BAC clone: B6Ng01-037K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,697,120 - 45,698,039)(45,556,350 - 45,556,440)
sequence
gaattctgtgataatgttatttaaatgctgctgacattccttttatttat
tgagaagaacttggatgttgaaaatatgtatgatgataagtaaaaagtaa
gtagcaagctcacttactgattcattttccaaaatgagagacagtacctg
tggcgcctccacatgcagaggagacggtctggagagcagagagtcccatt
gagaatgtggtgaattgttaggaggtggtcactcactgatcattctcaaa
cagtcttgcagagccttcccagcagagcacggtcctttgtgttgatagtg
atcagaacagcagcctacccaaggcaacactcgctctgccacagtcttca
cagctgatttgaggaagatgaattatagacagacaggtactcggagcatg
tgagagcttaaagatctatagttttgtctatagttagtctataattttgt
ctaggtcctgatttcctttcgctgtgtttaaatatttttgtcagatttat
tatttgtgtgtgtgtgcatatgtgtatatatatatgagtacactgtagct
gtcttcagacacatcagaagagggcattggatcccattacagatagatgt
gagccaccctgtggttgctggaaattgaactcagaacctctggaagagca
gtcggtgctcttagccgctgagccatctctccagcacctactctccactc
tttatgtctctaactaccttctcttctctctgattgaatagctacaaagt
attaatgctaacgggctttactgaagactctgtttgtttgtttaggttag
gcccctccatatgtagcccaagctaacctggaactttattgtctttctat
ctcctttccactttgcttggatcacagtcttgttaaattgggctcaaatc
actggtgcagcagagacttacttt
atgagactgactcaaaaaaatagttgtattcactgttagtcgtatcagtg
gataggtggatggatggatggatggatggatggatagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_45697120_45698039
seq2: B6Ng01-037K12.b_48_971 (reverse)

seq1  AAAGTAAGTCTCTGCTGCA-CAGTGAATTTGAGGCCAATTTAACAAGACT  49
      ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
seq2  AAAGTAAGTCTCTGCTGCACCAGTG-ATTTGAGCCCAATTTAACAAGACT  49

seq1  GTGATCCAAGC-AAGTGGTAAGGAGATAGAAAGACAAT-AAGGTCCAGGT  97
      ||||||||||| |||||| ||||||||||||||||||| ||| |||||||
seq2  GTGATCCAAGCAAAGTGGAAAGGAGATAGAAAGACAATAAAGTTCCAGGT  99

seq1  TAGCCTTGGCTACATATGGAGGGGCCTACCCTAAACAAACAAACAGAGTC  147
      |||| | ||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGCTTGGGCTACATATGGAGGGGCCTAACCTAAACAAACAAACAGAGTC  149

seq1  TTCAGTAAAG-CCGTTAGCATTATTAC-TTGTAGCTATTCAATCAGAGAG  195
      |||||||||| |||||||||||| ||| ||||||||||||||||||||||
seq2  TTCAGTAAAGCCCGTTAGCATTAATACTTTGTAGCTATTCAATCAGAGAG  199

seq1  AAGAGAAGGTAGTTAGAGACATAAAGAGTGGAGAGTAGGTGCTGGAGAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGTAGTTAGAGACATAAAGAGTGGAGAGTAGGTGCTGGAGAGA  249

seq1  TGGCTCAGCGGCTAAGAGCACCGACTGCTCTTCCAGAGGTTCTGAGTTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCGGCTAAGAGCACCGACTGCTCTTCCAGAGGTTCTGAGTTCA  299

seq1  ATTTCCAGCAACCACAGGGTGGCTCACATCTATCTGTAATGGGATCCAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCAACCACAGGGTGGCTCACATCTATCTGTAATGGGATCCAAT  349

seq1  GCCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTACTCATATATATAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTACTCATATATATAT  399

seq1  ACACATATGCACACACACACAAATAATAAATCTGACAAAAATATTTAAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGCACACACACACAAATAATAAATCTGACAAAAATATTTAAAC  449

seq1  ACAGCGAAAGGAAATCAGGACCTAGACAAAATTATAGACTAACTATAGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGAAAGGAAATCAGGACCTAGACAAAATTATAGACTAACTATAGAC  499

seq1  AAAACTATAGATCTTTAAGCTCTCACATGCTCCGAGTACCTGTCTGTCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATAGATCTTTAAGCTCTCACATGCTCCGAGTACCTGTCTGTCTA  549

seq1  TAATTCATCTTCCTCAAATCAGCTGTGAAGACTGTGGCAGAGCGAGTGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATCTTCCTCAAATCAGCTGTGAAGACTGTGGCAGAGCGAGTGTT  599

seq1  GCCTTGGGTAGGCTGCTGTTCTGATCACTATCAACACAAAGGACCGTGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGTAGGCTGCTGTTCTGATCACTATCAACACAAAGGACCGTGCT  649

seq1  CTGCTGGGAAGGCTCTGCAAGACTGTTTGAGAATGATCAGTGAGTGACCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGAAGGCTCTGCAAGACTGTTTGAGAATGATCAGTGAGTGACCA  699

seq1  CCTCCTAACAATTCACCACATTCTCAATGGGACTCTCTGCTCTCCAGACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAACAATTCACCACATTCTCAATGGGACTCTCTGCTCTCCAGACC  749

seq1  GTCTCCTCTGCATGTGGAGGCGCCACAGGTACTGTCTCTCATTTTGGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCTGCATGTGGAGGCGCCACAGGTACTGTCTCTCATTTTGGAAA  799

seq1  ATGAATCAGTAAGTGAGCTTGCTACTTACTTTTTACTTATCATCATACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAGTAAGTGAGCTTGCTACTTACTTTTTACTTATCATCATACAT  849

seq1  ATTTTCAACATCCAAGTTCTTCTCAATAAATAAAAGGAATGTCAGCAGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACATCCAAGTTCTTCTCAATAAATAAAAGGAATGTCAGCAGCA  899

seq1  TTTAAATAACATTATCACAGAATTC  920
      |||||||||||||||||||||||||
seq2  TTTAAATAACATTATCACAGAATTC  924

seq1: chr9_45556350_45556440
seq2: B6Ng01-037K12.g_79_169

seq1  ATGAGACTGACTCAAAAAAATAGTTGTATTCACTGTTAGTCGTATCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTGACTCAAAAAAATAGTTGTATTCACTGTTAGTCGTATCAGTG  50

seq1  GATAGGTGGATGGATGGATGGATGGATGGATGGATAGATGG  91
      |||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTGGATGGATGGATGGATGGATGGATGGATAGATGG  91