BAC Information

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BAC

Clone NameB6Ng01-037N01
Chromosome9 (Build37)9 (Build37)
Map Location 106,742,292 - 106,743,060108,085,901 - 108,086,782
singlet/doubletsingletsinglet
Overlap geneVprbp
Upstream geneEG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128
Downstream geneArmet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037N01.bB6Ng01-037N01.g
ACCDH865563DH865564
length296884
definitionDH865563|Mus musculus domesticus DNA, BAC clone: B6Ng01-037N01, 5' end.DH865564|Mus musculus domesticus DNA, BAC clone: B6Ng01-037N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,742,292 - 106,743,060)(108,085,901 - 108,086,782)
sequence
taaaacccaaaactggtaactactttttgccaaaacaataaagcatccac
tttttttttttaaagcaaagatgtgcaaagatgtggcttagggttacacc
tgtatttcaagggcatccctcagctcccaactgagatcaggccatttatt
tatctattaatttatttattttggtttttcgaaacagggtttctctgtgt
atcactggctgtcctggaactcactctggctacctggctgttttggaact
cagaaatctgcctgcccctgcccctcgagtgctgggattaaaggcg
tccctaccacagggagccacaggccacggtcccaactatagccaaccgcc
ccatggtgcttctacgcgaagatggcagatggtcccttaggagcagaact
tgggcaagtccctgagtttggtgctgctaccgacatgacatgcttctggc
aacgggaggactgaggccggaggccccacagctagacttgttcatcaagc
ctcactcatatcccgaagtggccctcagccactgctgcaagcatgcaggc
ctcggtcgccgttgtagttttcaaacagttccggggcaggaaggacaaag
atgccaggacagatggggcctgcagggtttgcacggcatggcagggcaag
agagaaataaaaaacctagccgactgtcggcgatgaagcagccactcagt
aaccacggtgagacccaatgtgacggcacgatcagccccagctcaacagg
acagaccatgggctcccggagcgagaccagtgagctgaggattgcttgaa
cccctcaaacctagctcctagcagcttcttatttcggatatacagagggc
tcacgtgagctggggtcaaagggcaggactctgaaagcgttggcttctta
aactcagtgccaacccaaatcaggaaaatttcagagacagaagaaaaagt
gacccagtacattgttctttggctcccaaattagtccaaagcctggctct
atttttagcgacttcctcctctctccatatctgaattcttcaacaatccc
ttcttctaacggtagatttcagcccgggcgtggtagcacatgccggctct
gcactttgggaggctaagcaggaggattgagagtttgaggccaccctggg
ctaagtattgtttaagatcaacatagccaagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106742292_106743060
seq2: B6Ng01-037N01.b_103_348 (reverse)

seq1  CGCCTTTAATCCCAATTCTTGGGAGGCAGAGGCAGATGGATGGATCTCTG  50
      ||||||||||||||   || | | ||||| |||||  | |  ||| ||  
seq2  CGCCTTTAATCCCAGCACTCGAGGGGCAGGGGCAG--GCA--GATTTC--  44

seq1  TGAATTCGAGGCTAGCCTAGTCTATGGAGTGAGTTCCAGGACAGCCAGGG  100
      ||| ||| |    ||||  ||     |||||||||||||||||||||| |
seq2  TGAGTTCCAAAACAGCCAGGTAGCCAGAGTGAGTTCCAGGACAGCCAGTG  94

seq1  CTACACAGA-AAACCCTGTTTTGAAAAACCCAAACCAAATCAGACAAAAA  149
       |||||||| ||||||||||| |||||| |||||  |||| |   || | 
seq2  ATACACAGAGAAACCCTGTTTCGAAAAA-CCAAAATAAATAAATTAATAG  143

seq1  ACAAGT--TTGGTTTTCAGCACCCATAGTTGGCAGCTTTTAATTCCAGGT  197
      | || |   |||    | |  | |  |||||| ||||             
seq2  ATAAATAAATGG---CCTGATCTC--AGTTGGGAGCT-------------  175

seq1  CCAGGTTAAATGATGGCCTCCTTAAACACCCACATAATACCTTGCATACA  247
        |||      |||| |||  | ||| ||     |||  |||     |||
seq2  -GAGG------GATGCCCT--TGAAATACAGGTGTAA-CCCTAAGCCACA  215

seq1  TACTCATTTTCTCA--TTTGCTTGCGTAAACACACACACACCCATGCATG  295
      |     ||| | ||  |||||||   |||| | | | |            
seq2  T----CTTTGCACATCTTTGCTT---TAAAAAAAAAAA------------  246

seq1  CACCCACACATGCACATGGGTGCATAGAATCTAGGGGGGTGAGTTGGGTG  345
                                                        
seq2  --------------------------------------------------  246

seq1  GTGATGCACACCTTTAATCCCAGCAACACAATCTACACAGAGAAACCCTG  395
                                                        
seq2  --------------------------------------------------  246

seq1  TCTTGAGGAGAAAGGTCAACGGATCAATCACTCTGTCTGTCCGTCTGTTC  445
                                                        
seq2  --------------------------------------------------  246

seq1  TGTTTGTCTGTCTCTGGGTTTATCATATGTTCAAAAGGAAGACACAAGTT  495
                                                        
seq2  --------------------------------------------------  246

seq1  AAGAGAAGGAACAGGTATTAAGTCTAATAGGAACAAAATGGGATAAAAGA  545
                                                        
seq2  --------------------------------------------------  246

seq1  AAATTGAGACTGGGTATGCTAGTTCATATTATTAATATTAGTACTCAGAA  595
                                                        
seq2  --------------------------------------------------  246

seq1  GGCAGAAGCAGGCAAGTCTCTTGAGTTTGAGGCCAGCCTGGTTTACATAG  645
                                                        
seq2  --------------------------------------------------  246

seq1  CAAGTTCCAGGACATGACAGTATTAAAAAAGAAAGGAAACAGATAGGATC  695
                                                        
seq2  --------------------------------------------------  246

seq1  TGCCCACAGGGTGAGGTGAAGTGAGTTTGTAGGTGGTGAGGTCTTAAATA  745
                                                        
seq2  --------------------------------------------------  246

seq1  AATTAGTTTCTTTAAAAAAAAAAA  769
                              
seq2  ------------------------  246

seq1: chr9_108085901_108086782
seq2: B6Ng01-037N01.g_80_963

seq1  TCCCTACCACAGGGAGCCACAGGCCACGGTCCCAACTATAGCCAACCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCACAGGGAGCCACAGGCCACGGTCCCAACTATAGCCAACCGCC  50

seq1  CCATGGTGCTTCTACGCGAAGATGGCAGATGGTCCCTTAGGAGCAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGCTTCTACGCGAAGATGGCAGATGGTCCCTTAGGAGCAGAACT  100

seq1  TGGGCAAGTCCCTGAGTTTGGTGCTGCTACCGACATGACATGCTTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGTCCCTGAGTTTGGTGCTGCTACCGACATGACATGCTTCTGGC  150

seq1  AACGGGAGGACTGAGGCCGGAGGCCCCACAGCTAGACTTGTTCATCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGAGGACTGAGGCCGGAGGCCCCACAGCTAGACTTGTTCATCAAGC  200

seq1  CTCACTCATATCCCGAAGTGGCCCTCAGCCACTGCTGCAAGCATGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATATCCCGAAGTGGCCCTCAGCCACTGCTGCAAGCATGCAGGC  250

seq1  CTCGGTCGCCGTTGTAGTTTTCAAACAGTTCCGGGGCAGGAAGGACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTCGCCGTTGTAGTTTTCAAACAGTTCCGGGGCAGGAAGGACAAAG  300

seq1  ATGCCAGGACAGATGGGGCCTGCAGGGTTTGCACGGCATGGCAGGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGACAGATGGGGCCTGCAGGGTTTGCACGGCATGGCAGGGCAAG  350

seq1  AGAGAAATAAAAAACCTAGCCGACTGTCGGCGATGAAGCAGCCACTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAAAAAACCTAGCCGACTGTCGGCGATGAAGCAGCCACTCAGT  400

seq1  AACCACGGTGAGACCCAATGTGACGGCACGATCAGCCCCAGCTCAACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGGTGAGACCCAATGTGACGGCACGATCAGCCCCAGCTCAACAGG  450

seq1  ACAGACCATGGGCTCCCGGAGCGAGACCAGTGAGCTGAGGATTGCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCATGGGCTCCCGGAGCGAGACCAGTGAGCTGAGGATTGCTTGAA  500

seq1  CCCCTCAAACCTAGCTCCTAGCAGCTTCTTATTTCGGATATACAGAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAAACCTAGCTCCTAGCAGCTTCTTATTTCGGATATACAGAGGGC  550

seq1  TCACGTGAGCTGGGGTCAAAGGGCAGGACTCTGAAAGCGTTGGCTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGAGCTGGGGTCAAAGGGCAGGACTCTGAAAGCGTTGGCTTCTTA  600

seq1  AACTCAGTGCCAACCCAAATCAGGAAAATTTCAGAGACAGAAGAAAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTGCCAACCCAAATCAGGAAAATTTCAGAGACAGAAGAAAAAGT  650

seq1  GACCCAGTACATTGTTCTTTGGCTCCCAAATTAGTCCAAAGCCTGGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTACATTGTTCTTTGGCTCCCAAATTAGTCCAAAGCCTGGCTCT  700

seq1  ATTTTTAGCGACTTCCTCCTCTCTCCATATCTGAATCCTTCAACAAATCC  750
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  ATTTTTAGCGACTTCCTCCTCTCTCCATATCTGAATTCTTCAAC-AATCC  749

seq1  CTTCTTCTAACGGTAGAATTTCAGCCC-GGCGTGGTAGCACATGCC-GCT  798
      |||||||||||||||| |||||||||| |||||||||||||||||| |||
seq2  CTTCTTCTAACGGTAG-ATTTCAGCCCGGGCGTGGTAGCACATGCCGGCT  798

seq1  CTGCACTTT-GGAGGCTAAGGCAGGAGGATTGAGAGTTTGAGGCCACCCT  847
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  CTGCACTTTGGGAGGCTAA-GCAGGAGGATTGAGAGTTTGAGGCCACCCT  847

seq1  GGGCTAAGTA-TGTTTAAGATCAACATAG-CAAGTCA  882
      |||||||||| |||||||||||||||||| |||||||
seq2  GGGCTAAGTATTGTTTAAGATCAACATAGCCAAGTCA  884