BAC Information

Click to search

BAC

Clone NameB6Ng01-038A09
Chromosome9 (Build37)11 (Build37)
Map Location 96,718,221 - 96,718,64692,044,077 - 92,045,182
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216
Downstream geneAcpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A09.bB6Ng01-038A09.g
ACCDH865717DH865718
length8321,098
definitionDH865717|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A09, 5' end.DH865718|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,718,221 - 96,718,646)(92,044,077 - 92,045,182)
sequence
gaattcagtacatagtccaatagcacagtgtcatatgtagtaaaatatag
atgacgcgatcaagagttagcatgttcctatgaaaatcactacttaaact
ttagagatttccaatgaaacgatggtttttcagttttagttattatttta
ttattacagttgtgtgtgtgtgtgtgtgtgttaattaagatttctatgac
tgtgatgaaacaccaatatgaaaatcagcttgaggagaaacgagtctgtt
ctggtttactgcttcatttcattttttttttttttcctctttggagaaag
tctggacaggaacttaaatggggcagagacctggaggcaggaggtgatgc
agaagccatggaggtgtgctgcttactgcctgctttctttcttttttttt
tttttctttccattttttattaggtatttagctcatttacatttccaatg
ctataccaaaagtcccccatacccacccacccccactcccctacccgccc
actccccctttttggccctggcgttcccctgttctggggcatataaagtt
tgtgtgtccaatgggcctctctttccagtgatggccgactaggccatctt
ttgatacatatgcagctagagtcaagagctccggggtactgcttagttca
taatgttgatccacctatagggttgcagatccctttagctccttgggtat
tttctctagctcctccattgggagccctgtgatccatccattagctgact
gtgggcatccacttctgtgtttgctaggccccggcatagtctcacaagga
gacagctacatctgggtcctttaaaaaaatct
gaattctttctggccacagcaataagacatgaaaacctaatgcggattct
tctctaggtaataaaatactgattaattttacatacatgtattcctttat
ttccaggttgtaaaggcatatagctataatttttaaaagtaaatatttaa
tggcttaaggttacatacgtggaaattttgtcttaaaccaagactgaaat
caaaagcttgcggattgaagataatatgtttttataaggtcaatacatta
catgacctttgctttaattcaatacttattgactggtagaaatcaatacc
taggtgcttgtgaaattaaactgtggggtatcctggagagaaagagattt
ttagtgactattactgggtatatactgttgataaatacccaccctctctc
ccatgtatgttcttatttatttatttatttatttatttatttatggtgtt
tgtagcttacaacatcaacatgtaagtcggttgtgttatattaactttta
taaaaagaaaaaagtgttttcattacttactttatttgctctgcttcagc
aagctctatttcttaaatcccagtgtgaaaacatgttttatggatggaaa
atgaagttgctggagttatattgaaagcagtagagcccaaggagaaatgg
aacaatggtttcatgggaaacaaatgcttgttaattgactcttctacttc
tcagtcatcagtagagatagtgttgggaaaatgaaaaatccttggatagg
aatgtataccaatttatatcagttccatcttaatgctgttgttgctttat
ctaatttttattccttagagtgttgtgacctggatagcaaaaatatacag
agtagttattatctactaaaaacaacatgattggaaaggccatgaatttt
taaatacattcatcatgtggaaatttgcatgattgcctttgtctgccagt
ttaatcagtaggtttttttttctctatctcctgtatttagtcctcaagat
gttaatcacagttactgttacattattcatgtacactagtgatcatttgc
ttgcttttgcaatgtcattctttcatacgtcttgtgtacagacatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96718221_96718646
seq2: B6Ng01-038A09.b_439_865 (reverse)

seq1  GACCCAGATGTAGCTGTCT-CTTGTGAGACTATGCCGGGGCCTAGCAAAC  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACCCAGATGTAGCTGTCTCCTTGTGAGACTATGCCGGGGCCTAGCAAAC  50

seq1  ACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCA  99
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTGGATGCCCACAGTCAGCTAATGGATGGATCACAGGGCTCCCA  100

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCT  149
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  ATGGAGGAGCTAGAGAAAATACCCAAGGAGCTAAAGGGATCTGCAACCCT  150

seq1  ATAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTC  199
      ||||||||| |||||||||||||||| ||||||||| |||||||||||||
seq2  ATAGGTGGATCAACATTATGAACTAAGCAGTACCCCGGAGCTCTTGACTC  200

seq1  TAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG  250

seq1  AGGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCA  299
      ||||||||||||||| || ||||| | |||||| | ||||||||||||||
seq2  AGGCCCATTGGACACACAAACTTTATATGCCCCAGAACAGGGGAACGCCA  300

seq1  GGGCCAAAGGGGGGAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAA  349
      ||||||||  |||| |||||| ||||||||||||||||||||||||||| 
seq2  GGGCCAAAAAGGGGGAGTGGGCGGGTAGGGGAGTGGGGGTGGGTGGGTAT  350

seq1  GGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAAT  400

seq1  AAAAAATGGAAAAAAAAAATAAAAAAA  426
      |||||||||||| |||||| |||||||
seq2  AAAAAATGGAAAGAAAAAAAAAAAAAA  427

seq1: chr11_92044077_92045182
seq2: B6Ng01-038A09.g_68_1165

seq1  GAATTCTTTCTGGCCACAGCAATAAGACATGAAAACCTAATGCGGATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGGCCACAGCAATAAGACATGAAAACCTAATGCGGATTCT  50

seq1  TCTCTAGGTAATAAAATACTGATTAATTTTACATACATGTATTCCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGGTAATAAAATACTGATTAATTTTACATACATGTATTCCTTTAT  100

seq1  TTCCAGGTTGTAAAGGCATATAGCTATAATTTTTAAAAGTAAATATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTTGTAAAGGCATATAGCTATAATTTTTAAAAGTAAATATTTAA  150

seq1  TGGCTTAAGGTTACATACGTGGAAATTTTGTCTTAAACCAAGACTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGGTTACATACGTGGAAATTTTGTCTTAAACCAAGACTGAAAT  200

seq1  CAAAAGCTTGCGGATTGAAGATAATATGTTTTTATAAGGTCAATACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTGCGGATTGAAGATAATATGTTTTTATAAGGTCAATACATTA  250

seq1  CATGACCTTTGCTTTAATTCAATACTTATTGACTGGTAGAAATCAATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTTTGCTTTAATTCAATACTTATTGACTGGTAGAAATCAATACC  300

seq1  TAGGTGCTTGTGAAATTAAACTGTGGGGTATCCTGGAGAGAAAGAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCTTGTGAAATTAAACTGTGGGGTATCCTGGAGAGAAAGAGATTT  350

seq1  TTAGTGACTATTACTGGGTATATACTGTTGATAAATACCCACCCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACTATTACTGGGTATATACTGTTGATAAATACCCACCCTCTCTC  400

seq1  CCATGTATGTTCTTATTTATTTATTTATTTATTTATTTATTTATGGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATGTTCTTATTTATTTATTTATTTATTTATTTATTTATGGTGTT  450

seq1  TGTAGCTTACAACATCAACATGTAAGTCGGTTGTGTTATATTAACTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTACAACATCAACATGTAAGTCGGTTGTGTTATATTAACTTTTA  500

seq1  TAAAAAGAAAAAAGTGTTTTCATTACTTACTTTATTTGCTCTGCTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAAAAGTGTTTTCATTACTTACTTTATTTGCTCTGCTTCAGC  550

seq1  AAGCTCTATTTCTTAAATCCCAGTGTGAAAACATGTTTTATGGATGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTATTTCTTAAATCCCAGTGTGAAAACATGTTTTATGGATGGAAA  600

seq1  ATGAAGTTGCTGGAGTTATATTGAAAGCAGTAGAGCCCAAGGAGAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTGCTGGAGTTATATTGAAAGCAGTAGAGCCCAAGGAGAAATGG  650

seq1  AACAATGGTTTCATGGGAAACAAATGCTTGTTAATTGACTCTTCTACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGTTTCATGGGAAACAAATGCTTGTTAATTGACTCTTCTACTTC  700

seq1  TCAGTCATCAGTAGAGATAGTGTTGGGAAAATGAAAAATCCTTGGATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATCAGTAGAGATAGTGTTGGGAAAATGAAAAATCCTTGGATAGG  750

seq1  AATGTATACCAATTTATATCAGTTCCATCTTAATGCTGTTGTTGCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATACCAATTTATATCAGTTCCATCTTAATGCTGTTGTTGCTTTAT  800

seq1  CTAATTTTTATTCCTTAGAGTGTTGTGACCTGGATAGCAAAAATATACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTATTCCTTAGAGTGTTGTGACCTGGATAGCAAAAATATACAG  850

seq1  AGTAGTTATTATCTACTAAAAACAACATGATTGGAAAGGCCATGAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTATTATCTACTAAAAACAACATGATTGGAAAGGCCATGAATTTT  900

seq1  TAAATACATTCATCATGTGGAAATTTGCATGATTGCCTTTGTCTGCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAATACATTCATCATGTGGAAATTTGCATGATTGCCTTTGTCTGCCAG-  949

seq1  TTTAATCAGTAGGTTTTTTTTTCTCTATCTCCTGGTATTTAGTCCTCAAG  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTAATCAGTAGGTTTTTTTTTCTCTATCTCCT-GTATTTAGTCCTCAAG  998

seq1  ATGTTAATCCACAGTTACTGTTACATTATTCATGTACACTAGGTGATCAT  1050
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  ATGTTAAT-CACAGTTACTGTTACATTATTCATGTACACTA-GTGATCAT  1046

seq1  TTGCTTGCTTTTGCAAAATGTCATTCTTTCATATACGTC-TGTGTCACAG  1099
      ||||||||||||||  ||||||||||||||  ||||||| ||||| ||||
seq2  TTGCTTGCTTTTGC--AATGTCATTCTTTC--ATACGTCTTGTGT-ACAG  1091

seq1  ACATGTA  1106
      |||||||
seq2  ACATGTA  1098