BAC Information

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BAC

Clone NameB6Ng01-038B11
Chromosome7 (Build37)9 (Build37)
Map Location 33,527,952 - 33,529,09833,026,641 - 33,027,162
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373, EG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499
Downstream geneLOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038B11.bB6Ng01-038B11.g
ACCDH865764DH865765
length1,135991
definitionDH865764|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B11, 5' end.DH865765|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,527,952 - 33,529,098)(33,026,641 - 33,027,162)
sequence
gaattctctctgttgaccaggctgtactccagctcagagatttttctgct
tctgccccccaagtgctgcaattaaaggcctgctccaccactgactggca
tggtagttgttatttaatgtataaaaccaagaaatcactgtagtcctgat
gttgttcaatttcactgctcttaatgtgaccccttatagttacccctttc
ctaactgcccatcagggtgttcattgatttgttttcccctttcagaagac
ctctgtcattagttcaaggactttttgctgccttcaagttgggactgttg
taaataaagctgttctgtgcattcattcatttgttcctctcttctgtgtg
tcaatattcaggcatcaaaggcctgcatgcctcatttgtacatgtgagag
tttatcttctagatatgatggaataagaaagtcaaaaaggaaggtacata
ctacctacatgtatcaagagaaggcacatatgtcatgccacacaatgcta
tgtcagacagattattgttaagtgggagacagaaaaacatgaggaagagg
cctcaccctttcttgggaactccttgggcacaggaaactgttcttggatt
tactggtttgaataagctcaacagttttcagatttgggaccaggcttggt
cctgaggtggtattttggaaaaatgctggatagggtgttaaaagtgaaga
tgttctgttttctcagaatcattgctttgtctgtgagagctttgtccctg
ggaaggccatttggccttccacagaacaagtcaggcttctttaggaagcc
ctaggcgttgtcatatcacatcaggaaacagttgaacagagcaatggctc
tatgcctgtcagtcttaaacactgaccaatgtatcttgtttgtataactt
tcagtccctcagcctgctcactagcacttgctctctttgatgtgtcttct
caatttgggcagtaatatacagatagagttgtgttactatgtgcatgcca
tttaacaatggagttcatcattttattacacagctttccagtcctctctt
cccttttactggttgggttgctttttttgttttagtttaaagaaaagtgg
gcatgcatatggccacatgcatggtaggatcagag
gaattcagaacttttcagctggggaacgagagtaccagtgagtatagctt
tacgaggtaagcctggccttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggagga
ttctagaggaaattcagggcaatctatcagaagtaaagcggggagagaga
gtaggaacaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggaaaagaaaaaagaaaagaaaagagatcgatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttggtagctctgaatcagatgatgaattctcctctgaag
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctggcga
aggccagtttgctgattggcctcagggcagtcggcttcaaggtccgccct
atgcggagcccccgccctgcgtagtgcgtcagccctgcgcagagaggcag
tgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaag
gaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgtg
tccacgctccggtagaatacttacaaattaaagaaattgccgagtcggtc
cgtaaatacggaaccaatgctaattttaccttggtgcagttagacagctt
gccggcatggcactaactcctgccgactggcaaacggttgtaaagccgct
ctccctagtatgggcaatatatggaatgagagcgctttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_33527952_33529098
seq2: B6Ng01-038B11.b_49_1183

seq1  GAATTCTCTCTGTTGACCAGGCTGTACTCCAGCTCAGAGATTTTTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTTGACCAGGCTGTACTCCAGCTCAGAGATTTTTCTGCT  50

seq1  TCTGCCCCCCAAGTGCTGCAATTAAAGGCCTGCTCCACCACTGACTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCCAAGTGCTGCAATTAAAGGCCTGCTCCACCACTGACTGGCA  100

seq1  TGGTAGTTGTTATTTAATGTATAAAACCAAGAAATCACTGTAGTCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGTTATTTAATGTATAAAACCAAGAAATCACTGTAGTCCTGAT  150

seq1  GTTGTTCAATTTCACTGCTCTTAATGTGACCCCTTATAGTTACCCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCAATTTCACTGCTCTTAATGTGACCCCTTATAGTTACCCCTTTC  200

seq1  CTAACTGCCCATCAGGGTGTTCATTGATTTGTTTTCCCCTTTCAGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCCCATCAGGGTGTTCATTGATTTGTTTTCCCCTTTCAGAAGAC  250

seq1  CTCTGTCATTAGTTCAAGGACTTTTTGCTGCCTTCAAGTTGGGACTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATTAGTTCAAGGACTTTTTGCTGCCTTCAAGTTGGGACTGTTG  300

seq1  TAAATAAAGCTGTTCTGTGCATTCATTCATTTGTTCCTCTCTTCTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGCTGTTCTGTGCATTCATTCATTTGTTCCTCTCTTCTGTGTG  350

seq1  TCAATATTCAGGCATCAAAGGCCTGCATGCCTCATTTGTACATGTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTCAGGCATCAAAGGCCTGCATGCCTCATTTGTACATGTGAGAG  400

seq1  TTTATCTTCTAGATATGATGGAATAAGAAAGTCAAAAAGGAAGGTACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCTAGATATGATGGAATAAGAAAGTCAAAAAGGAAGGTACATA  450

seq1  CTACCTACATGTATCAAGAGAAGGCACATATGTCATGCCACACAATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACATGTATCAAGAGAAGGCACATATGTCATGCCACACAATGCTA  500

seq1  TGTCAGACAGATTATTGTTAAGTGGGAGACAGAAAAACATGAGGAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACAGATTATTGTTAAGTGGGAGACAGAAAAACATGAGGAAGAGG  550

seq1  CCTCACCCTTTCTTGGGAACTCCTTGGGCACAGGAAACTGTTCTTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCTTTCTTGGGAACTCCTTGGGCACAGGAAACTGTTCTTGGATT  600

seq1  TACTGGTTTGAATAAGCTCAACAGTTTTCAGATTTGGGACCAGGCTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTTGAATAAGCTCAACAGTTTTCAGATTTGGGACCAGGCTTGGT  650

seq1  CCTGAGGTGGTATTTTGGAAAAATGCTGGATAGGGTGTTAAAAGTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTGGTATTTTGGAAAAATGCTGGATAGGGTGTTAAAAGTGAAGA  700

seq1  TGTTCTGTTTTCTCAGAATCATTGCTTTGTCTGTGAGAGCTTTGTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTTTCTCAGAATCATTGCTTTGTCTGTGAGAGCTTTGTCCCTG  750

seq1  GGAAGGCCATTTGGCCTTCCACAGAACAAGTCAGGCTTCTTTAGGAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCATTTGGCCTTCCACAGAACAAGTCAGGCTTCTTTAGGAAGCC  800

seq1  CTAGGCGTTGTCATATCACATCAGGAAACAGTTGAACAGAGCAATGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCGTTGTCATATCACATCAGGAAACAGTTGAACAGAGCAATGGCTC  850

seq1  TATGCCTGTCAGTCTTAAACACTGACCAATGTATCTTGTTTGTATAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGTCAGTCTTAAACACTGACCAATGTATCTTGTTTGTATAACTT  900

seq1  TCAGTCCCTCAGCCTGCTCACTAGCACTTGCTCTCTTTGATGTGTCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCTCAGCCTGCTCACTAGCACTTGCTCTCTTTGATGTGTCTTCT  950

seq1  CAATTTTGGCCAGTAATATACAGAATAAGAGTTGTGTTACTATGTTGCAT  1000
      ||| ||||| ||||||||||||||   ||||||||||||||||| |||||
seq2  CAA-TTTGGGCAGTAATATACAGA--TAGAGTTGTGTTACTATG-TGCAT  996

seq1  GCCAATTTAACAAATGGAGTTCATCATTTTAATTTACACAGCTTTCCAGT  1050
      ||| ||||||| |||||||||||||||||||  |||||||||||||||||
seq2  GCC-ATTTAAC-AATGGAGTTCATCATTTTA--TTACACAGCTTTCCAGT  1042

seq1  CCTCTC-TCCCTTTTACTTGTTGGGTTGCTGTTTTGTGTTTGAGTTTATA  1099
      |||||| ||||||||||| ||||||||||| |||| ||||| |||||| |
seq2  CCTCTCTTCCCTTTTACTGGTTGGGTTGCT-TTTTTTGTTTTAGTTTA-A  1090

seq1  AGAAAGAGTGGGCATGCATATGGCACAGCATGCAT-GTAGAGATCAGAG  1147
      ||||| |||||||||||||||||| || ||||||| |||| ||||||||
seq2  AGAAA-AGTGGGCATGCATATGGC-CA-CATGCATGGTAG-GATCAGAG  1135

seq1: chr9_33026641_33027162
seq2: B6Ng01-038B11.g_68_502 (reverse)

seq1  GATGAGTATAGGCTCCTTCTCCTAGAAACCTCCGCTGATTGA--------  42
      |||||| | ||||||||| ||||||| ||||||||| || ||        
seq2  GATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATCGATCTCTTTT  50

seq1  ----TCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTAC  88
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTAC  100

seq1  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  150

seq1  TTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTT  188
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TTATTTTGTGTACCATATTTTCTCTTTGTTCCTACTCTCTCTCCCCGCTT  200

seq1  TACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCT  238
      ||||||||||||||||||||||||||| || ||||   ||  ||||||||
seq2  TACTTCTGATAGATTGCCCTGAATTTCCTCTAGAA---TCCTCCCTGCCT  247

seq1  TAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGA  288
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  TAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTTCTAACACTAGA  297

seq1  GAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTC  338
       ||| |||||||||||||               |||| ||||||||||||
seq2  AAAAATTCAAGGCCAAAC---------------ATTTTCCACTTTACTTC  332

seq1  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTT  388
      ||||||||||||||||||||| |||||||||||||| |||| ||||||| 
seq2  TGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGGCCAGGCTTACCTC  382

seq1  GTAAAGCTATACTTACTGGTACCCCTATTCCCCAGCTGAAGAGTTCTGAA  438
      ||||||||||||| |||||||| |   ||||||||||||| |||||||||
seq2  GTAAAGCTATACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAA  432

seq1  TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCAT  488
      |||                                               
seq2  TTC-----------------------------------------------  435

seq1  TACCACCGTTCCCCAGCTGAAGAGTTCTGAATTC  522
                                        
seq2  ----------------------------------  435