BAC Information

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BAC

Clone NameB6Ng01-038H22
Chromosome9 (Build37)
Map Location 81,603,386 - 81,731,857
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream gene4930486G11Rik, LOC100039085, Irak1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038H22.bB6Ng01-038H22.g
ACCDH866038DH866039
length1,1761,145
definitionDH866038|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H22, 5' end.DH866039|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,603,386 - 81,604,351)(81,730,696 - 81,731,857)
sequence
gaattccttattctcagaagttcaaaggattcaatgtctccataatagct
gccttaccttgtaaagaaaacagcctatgagtggagctaagagcagcagt
aacctgtggacatacacaaaaaagtttagaaggcaatttcacagacacaa
aacattcatttaataaaccaacaataacagcctcaattttatgacctaaa
atttccccagccacatattttgtcctagattacaataccaaatatggatt
ctctcttgtggataatgccttgaattcaatagaaactagtcacttgtaca
tactatagtcacatcactattatatcaatgtcacatatttgcctggcagc
tgatagcattattaatatagttgagaaagatgattagcaacaatttcctt
ctaccagccttcatacaacttttcatcactacaaatgctagctactaggg
aaggtgctttcttatctagctcagtctaattttgtaatttctctgtgtcc
tggaatcaaattgaacacacagtgttttcagcaatagaggcttactctct
atttagccattcaactcacagcagtgaccacagcctgtattatgttgagg
cccttgggagtcttcctagcaaacaaatcataggtagttagcctattgct
gacactggtatttccaagtgatctccttatgctcatggctgtgctgtttt
ccactcacggagtctcttcattcactctttaactgctattttcattgctc
ttccaaatgcttttcaaatctcaacaagatcatggagttactataatgaa
acttttatcccctgagagggtaagcaaaatcttctggtgataatcgagta
tcctcaagcactttttatgagtcagtccttctgggctcatttctttaatt
ttacctcatgttgtgcagcccttgtcccaatcaatgatgtggagcatctc
tacttctatcataccaactactcccacctacaacatctgatccaagctgg
gaaaggacactcgttcttcttaacgtctttttcatctctagaatagtagg
aaacctaggacaatagaactccaggatctatgagatggccctagctaaaa
ttctgcatgggagatatgagctgacatgacatctcctagcagattccaat
ggagggatgggaactacagcatataa
gaattcatttctttccaatagtaatctggattctgaaccttaatattctt
ttctacaagtatgtaagatgtgaaaggaatagttgagaatcaagggaagc
tgaggacatggagtaggatatgcatgatgtcaactcttatgacacttggt
cataaaggcttagtagctctatatggaacatgggggcagagataatattt
gcttacttaccatttgaattctatttgatttgagaaagagatttttgaat
gctagtttctttatggtttgataaaaaggaaatgagaaagttgatgtcaa
aaaaaaaaaagaatcttaatacaagatgggatagacactaatgacatgat
acatttgatctctagagaaaaaattatacctctgagattgaaatagaaga
tttcttttcctgaagaacttgggaattcaaatgattcagatggattacag
gaattgcaattcctctgtttctataagagaatataaaggaaagagaagat
tagtagatctgaatgtgtgcagttggtgagtagagaacagaattggaaat
actttcctaagagacctagagaacaatctaagtctagaaatgcaaaagaa
tacttggaggttttgttggccaaactaccactgctaattgtattagtcag
ttttctacaattttgttaaaaggcctgcaagaaatatacataaaagtaga
aagctttattttagctcatgatttcagaggttttagcctgtggatatttg
gtgctttttctttagacgtgtggtaagccagaaaatcacatcatagatac
ttgtcacaaaaaagtatctgaccttacactgcctaaagaataaaaaagag
aaataagttgcaatccaataagctcatggtagcgtgaatgaaaagtttct
ccataggctcaagtatttgcacatttcattctcagtgggtgctgtttgga
agagtgatgtgtacattttgaaggtacagccttggtggaggaagtatgtc
atgggtggtaagtaactagagttataatcagcccctctttcaatttgctg
ttttttattacagtctatcaagtccggttcacatgtctgcacatctatcc
atggaatttgactcttcctcagaccttgctaaaataacatctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81603386_81604351
seq2: B6Ng01-038H22.b_281_1223

seq1  AATACCAAATATGGATTCTCTCTTGTGGATAATGCCTTGAATTCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAATATGGATTCTCTCTTGTGGATAATGCCTTGAATTCAATAGA  50

seq1  AACTAGTCACTTGTACATACTATAGTCACATCACTATTATATCAATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTCACTTGTACATACTATAGTCACATCACTATTATATCAATGTCA  100

seq1  CATATTTGCCTGGCAGCTGATAGCATTATTAATATAGTTGAGAAAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGCCTGGCAGCTGATAGCATTATTAATATAGTTGAGAAAGATGA  150

seq1  TTAGCAACAATTTCCTTCTACCAGCCTTCATACAACTTTTCATCACTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACAATTTCCTTCTACCAGCCTTCATACAACTTTTCATCACTACA  200

seq1  AATGCTAGCTACTAGGGAAGGTGCTTTCTTATCTAGCTCAGTCTAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGCTACTAGGGAAGGTGCTTTCTTATCTAGCTCAGTCTAATTTT  250

seq1  GTAATTTCTCTGTGTCCTGGAATCAAATTGAACACACAGTGTTTTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCTCTGTGTCCTGGAATCAAATTGAACACACAGTGTTTTCAGCA  300

seq1  ATAGAGGCTTACTCTCTATTTAGCCATTCAACTCACAGCAGTGACCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCTTACTCTCTATTTAGCCATTCAACTCACAGCAGTGACCACAG  350

seq1  CCTGTATTATGTTGAGGCCCTTGGGAGTCTTCCTAGCAAACAAATCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTATGTTGAGGCCCTTGGGAGTCTTCCTAGCAAACAAATCATAG  400

seq1  GTAGTTAGCCTATTGCTGACACTGGTATTTCCAAGTGATCTCCTTATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGCCTATTGCTGACACTGGTATTTCCAAGTGATCTCCTTATGCT  450

seq1  CATGGCTGTGCTGTTTTCCACTCACGGAGTCTCTTCATTCACTCTTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGTGCTGTTTTCCACTCACGGAGTCTCTTCATTCACTCTTTAAC  500

seq1  TGCTATTTTCATTGCTCTTCCAAATGCTTTTCAAATCTCAACAAGATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTCATTGCTCTTCCAAATGCTTTTCAAATCTCAACAAGATCAT  550

seq1  GGAGTTACTATAATGAAACTTTTATCCCCTGAGAGGGTAAGCAAAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACTATAATGAAACTTTTATCCCCTGAGAGGGTAAGCAAAATCTT  600

seq1  CTGGTGATAATCGAGTATCCTCAAGCACTTTTTATGAGTCAGTCCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATAATCGAGTATCCTCAAGCACTTTTTATGAGTCAGTCCTTCTG  650

seq1  GGCTCATTTCTTTAATTTTACCTCATGTTGTGCAGCCCTTGTCCCAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTTCTTTAATTTTACCTCATGTTGTGCAGCCCTTGTCCCAATCA  700

seq1  ATGATGTGGAGCATCTCTACTTCTATCATACCAAACTACTCCCACCTACA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGATGTGGAGCATCTCTACTTCTATCATACC-AACTACTCCCACCTACA  749

seq1  ACCATCTGATCCAAGCT-GGAAAGGACACTCGTTTCTTCTTTAAACGTCT  799
      | ||||||||||||||| |||||||||||||| ||||||||  |||||||
seq2  A-CATCTGATCCAAGCTGGGAAAGGACACTCG-TTCTTCTT--AACGTCT  795

seq1  TTTTCATCTCTAGAATAGTTAGAAACCTAGGACAATAGAAACTCCCAGGA  849
      |||||||||||||||||||  ||||||||||||||||| |||| ||||| 
seq2  TTTTCATCTCTAGAATAGTAGGAAACCTAGGACAATAG-AACT-CCAGG-  842

seq1  ATCTATGAGGATGGCCCTAGCTAAAAATTCTAGCAATGGGAGATATGAAG  899
      |||||||| ||||||||||||| |||||||| || |||||||||||||  
seq2  ATCTATGA-GATGGCCCTAGCT-AAAATTCT-GC-ATGGGAGATATGA--  886

seq1  CCTGACATGACCATCTCCCTAGCAAGATTCCCAATGGAGGGATTGGGACA  949
       ||||||||| ||||| |||||| ||||| |||||||||||| ||||| |
seq2  GCTGACATGA-CATCT-CCTAGC-AGATT-CCAATGGAGGGA-TGGGA-A  930

seq1  CTAACCCAGCCATATAA  966
      |||   ||| |||||||
seq2  CTA---CAG-CATATAA  943

seq1: chr9_81730696_81731857
seq2: B6Ng01-038H22.g_69_1213 (reverse)

seq1  TGTAGAATAGTTTATTTTAGCCAGGGGTTCTAGAAGAAGAGTCAAAAATT  50
      |||||   |  |||||||||| |||   ||| || ||||||||  |||||
seq2  TGTAG---ATGTTATTTTAGCAAGG---TCT-GAGGAAGAGTC--AAATT  41

seq1  ACAGTGAATAGATTGTAGCAGACATGTGAAACGGGAACCTGATAGACTGT  100
       || || ||||| ||| ||||||||||||| |||  || |||||||||||
seq2  CCA-TGGATAGA-TGT-GCAGACATGTGAACCGG--ACTTGATAGACTGT  86

seq1  AAATAAAAAACAGCAAATTGGAAGAGGGGCCTGATTATAAACTCTAGTTA  150
       ||||||||||||||||||| |||||||| |||||||| |||||||||||
seq2  -AATAAAAAACAGCAAATTGAAAGAGGGG-CTGATTAT-AACTCTAGTTA  133

seq1  CTTACCACCCATGACATACTTCCTCCACCAAGGCTGTACCTTCAAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACCCATGACATACTTCCTCCACCAAGGCTGTACCTTCAAAATGT  183

seq1  AACACATCACTC-TCCAAACAGCACCCACTGAGAATGAAATGTGCAAATA  249
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -ACACATCACTCTTCCAAACAGCACCCACTGAGAATGAAATGTGCAAATA  232

seq1  CTTGAGCCTATGGAGAAACTTTTCATTCACGCTACCATGAGCTTATTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCTATGGAGAAACTTTTCATTCACGCTACCATGAGCTTATTGGA  282

seq1  TTGCAACTTATTTCTCTTTTTTATTCTTTAGGCAGTGTAAGGTCAGATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTTATTTCTCTTTTTTATTCTTTAGGCAGTGTAAGGTCAGATAC  332

seq1  TTTTTTGTGACAAGTATCTATGATGTGATTTTCTGGCTTACCACACGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGACAAGTATCTATGATGTGATTTTCTGGCTTACCACACGTCT  382

seq1  AAAGAAAAAGCACCAAATATCCACAGGCTAAAACCTCTGAAATCATGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGCACCAAATATCCACAGGCTAAAACCTCTGAAATCATGAGC  432

seq1  TAAAATAAAGCTTTCTACTTTTATGTATATTTCTTGCAGGCCTTTTAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAGCTTTCTACTTTTATGTATATTTCTTGCAGGCCTTTTAACA  482

seq1  AAATTGTAGAAAACTGACTAATACAATTAGCAGTGGTAGTTTGGCCAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAGAAAACTGACTAATACAATTAGCAGTGGTAGTTTGGCCAACA  532

seq1  AAACCTCCAAGTATTCTTTTGCATTTCTAGACTTAGATTGTTCTCTAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCAAGTATTCTTTTGCATTTCTAGACTTAGATTGTTCTCTAGGT  582

seq1  CTCTTAGGAAAGTATTTCCAATTCTGTTCTCTACTCACCAACTGCACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGAAAGTATTTCCAATTCTGTTCTCTACTCACCAACTGCACACA  632

seq1  TTCAGATCTACTAATCTTCTCTTTCCTTTATATTCTCTTATAGAAACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCTACTAATCTTCTCTTTCCTTTATATTCTCTTATAGAAACAGA  682

seq1  GGAATTGCAATTCCTGTAATCCATCTGAATCATTTGAATTCCCAAGTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCAATTCCTGTAATCCATCTGAATCATTTGAATTCCCAAGTTCT  732

seq1  TCAGGAAAAGAAATCTTCTATTTCAATCTCAGAGGTATAATTTTTTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAAGAAATCTTCTATTTCAATCTCAGAGGTATAATTTTTTCTCT  782

seq1  AGAGATCAAATGTATCATGTCATTAGTGTCTATCCCATCTTGTATTAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAAATGTATCATGTCATTAGTGTCTATCCCATCTTGTATTAAGA  832

seq1  TTCTTTTTTTTTTTTGACATCAACTTTCTCATTTCCTTTTTATCAAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTTTTGACATCAACTTTCTCATTTCCTTTTTATCAAACCA  882

seq1  TAAAGAAACTAGCATTCAAAAATCTCTTTCTCAAATCAAATAGAATTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACTAGCATTCAAAAATCTCTTTCTCAAATCAAATAGAATTCAA  932

seq1  ATGGTAAGTAAGCAAATATTATCTCTGCCCCCATGTTCCATATAGAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGTAAGCAAATATTATCTCTGCCCCCATGTTCCATATAGAGCTA  982

seq1  CTAAGCCTTTATGACCAAGTGTCATAAGAGTTGACATCATGCATATCCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTTTATGACCAAGTGTCATAAGAGTTGACATCATGCATATCCTA  1032

seq1  CTCCATGTCCTCAGCTTCCCTTGATTCTCAACTATTCCTTTCACATCTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCCTCAGCTTCCCTTGATTCTCAACTATTCCTTTCACATCTTA  1082

seq1  CATACTTGTAGAAAAGAATATTAAGGTTCAGAATCCAGATTACTATTGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGTAGAAAAGAATATTAAGGTTCAGAATCCAGATTACTATTGGA  1132

seq1  AAGAAATGAATTC  1162
      |||||||||||||
seq2  AAGAAATGAATTC  1145