BAC Information

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BAC

Clone NameB6Ng01-038M09
Chromosome9 (Build37)
Map Location 19,341,201 - 19,342,342
singlet/doubletsinglet
Overlap geneOlfr853
Upstream geneMuc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1
Downstream geneOlfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M09.bB6Ng01-038M09.g
ACCDH866233DH866234
length1,1171,246
definitionDH866233|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M09, 5' end.DH866234|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttctcttgggcctctcagaggatccagaacttcagcccatcct
ctttggactgttcctgcttatgtacctagtgacagtctctgggaacctgc
tcatcatcctggccattgtctctgacgctcacctccacactccaatgtac
ttcttcctctcaaacctgtccttcactgatatctgcttcagcaccaccac
tgttcctaagatgctgacaaaccttcagaaacagagcaaatccatcagtt
acacaggctgcattacccagcttagctttgtcctactttttgctggaatg
gaaaactttcttcttgcagcaatggcttatgaccgttatgtggccatctg
caatccccttcgctacacagacatcatgaaactccatttgtgttttgtga
tgatttttttgtctttgtacattagcattgtggatgcccttctacatggc
ttaatgacattgcgtctatctttctgcacatttcttgaaattccccactt
cttctgtgaactttatcaggttatcaagattgcatgttctgacactctca
tcaataacattttgatatatgtcatgagtagtgcattaggtggtatgccc
ctagtagggattattttctcttactataaaattatctcttccatcctcag
aatgccatcaccaggcggtaggcataaggctttttcaacatgtggatctc
atctgtcagtggtttccttgttctatgggacagcttttggggtatacatt
agttctgcatttacagagtcatacaggagaacttctgtagcatcattgat
gtatactgtgtttccgcctatgctgaacccatttatctatagtctgagga
acaaagatatgaagaaagctttgagaaaatagtctgaacatcaactttct
ttttccttttaactgttttttaattcttttttcttggacactttctttat
tcacatttcatatgatttccctttcaggtgtcccttcgaaactcccatcc
catcttcctcccctgcctctatgagtgctccccattacccacccattttg
tcttcccctggcattccctaactgggcatcaaaacctcagccaggacctc
tcctcccactatgtcta
gaattctagttactggaccaagtacatgctattttggaagaaaagttctg
catttgtgttgaaaggaaaggagaatagcctatagaccccttccagagtg
atatggattagatatgacagtggtagactgaagaactataaatgttcaag
aaaattaaacaggaacagtaggtattcatcattctatctttcacacagca
tgaatgaaggcttattacaattagttattaataaaactaactcataataa
aagacacttgtctttaacctgctcaaaacagtagcataatttcacccata
actggtctgtgtaccctgcacaacccatacaaatattttaattgatagaa
acctttataattgatacaaattaaaattataatttcttatattggtacaa
aatttatattgataaagattttatgctttcattggtatgaatttgtatat
tgatacaaaatttgaaattaatattgtcactcttaggtaggcactgtgcc
tatggaactcatttaagaatatgcagtttaggcactgtcctaatagctga
tttacaaactgtttaagatgattaagtaacacaaattaaggtccagatag
caaattcatagttatgttagatttgtatttaattataataaaatgtttac
acaaatatgaatggctaagagtaattaaggtttaacactttagagatact
ttacttagatagtcttacaaaacatcagaaatccccagaatgtgacattt
aatgttatttcattattaagaatcacttcataatgagacatatatgctgc
gacagtttccccattcttcttcaaagagaaattgagcatctttaccccct
cacgtgaggttacttatcatggcaatgtatccactggacaaatttgcttt
tatcatcaacagataaataaatactgtccaaaaggtcaaacagagatggg
atagtcgaatactcacgttgtcaagacaggcatagctgcttcccaggtgg
gagattagaaacacactaagtggaggcagttttgggttgttgacaagtag
agtatcaggatgttaagctggtccttcttattttctacttccaaagtttg
ccgatgtttggacagagtcggaagaaagagttccactagaaaataaggcc
tgtcagtaacgttctcctagtgttaggttggaacatgtttggcactccaa
cttagccaatttaccttttccacttctgcaggtgaactgtaacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19341201_19342342
seq2: B6Ng01-038M09.b_48_1164 (reverse)

seq1  TAGACATCAGTGGGAGGAGAGGTCCTTGGGCTTGAGGGTGTTTGATGGCC  50
      ||||||| ||||||||||||||||||  ||| |||||   |||||| |||
seq2  TAGACAT-AGTGGGAGGAGAGGTCCT--GGC-TGAGG--TTTTGAT-GCC  43

seq1  CAGTGTAGGGGAATGCCAGGGTGGGAAGACAGAATGGGTGGGTAATTGGG  100
      |||| || |||||||||||   ||||||||| ||||||||||||||  ||
seq2  CAGT-TA-GGGAATGCCAG---GGGAAGACAAAATGGGTGGGTAAT--GG  86

seq1  GGAGCAACCTCATAGAGGCAGGGGGAGGGAAGATGGGATGGGAGTTTCCG  150
      ||||||  ||||||||||||||||   |||||||||||||||||||| ||
seq2  GGAGCA--CTCATAGAGGCAGGGG--AGGAAGATGGGATGGGAGTTT-CG  131

seq1  AAGGGGACACCTGGAAAGGGGAAATCATATGAAATGTGAATAAAGAAAGT  200
      || ||||||||||  || ||||||||||||||||||||||||||||||||
seq2  AA-GGGACACCTG--AAAGGGAAATCATATGAAATGTGAATAAAGAAAGT  178

seq1  GTCCAAGAAAAAAAGAATTAAAAAACAGTTAAAAAGGAAAAAGAAAGTTG  250
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  GTCCAAG-AAAAAAGAATTAAAAAACAGTT-AAAAGGAAAAAGAAAGTTG  226

seq1  ATGTTCAGACTATTTTTCTCAAAGCTTTCTTCATATCTTTGTTCCTCAGA  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGACTA-TTTTCTCAAAGCTTTCTTCATATCTTTGTTCCTCAGA  275

seq1  CTATAGATAAATGGGTTCAGCATAGGCGGAAACACAGTATACATCAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATAAATGGGTTCAGCATAGGCGGAAACACAGTATACATCAATGA  325

seq1  TGCTACAGAAGTTCTCCTGTATGACTCTGTAAATGCAGAACTAATGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGAAGTTCTCCTGTATGACTCTGTAAATGCAGAACTAATGTATA  375

seq1  CCCCAAAAGCTGTCCCATAGAACAAGGAAACCACTGACAGATGAGATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAGCTGTCCCATAGAACAAGGAAACCACTGACAGATGAGATCCA  425

seq1  CATGTTGAAAAAGCCTTATGCCTACCGCCTGGTGATGGCATTCTGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAAAAAGCCTTATGCCTACCGCCTGGTGATGGCATTCTGAGGAT  475

seq1  GGAAGAGATAATTTTATAGTAAGAGAAAATAATCCCTACTAGGGGCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGATAATTTTATAGTAAGAGAAAATAATCCCTACTAGGGGCATAC  525

seq1  CACCTAATGCACTACTCATGACATATATCAAAATGTTATTGATGAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAATGCACTACTCATGACATATATCAAAATGTTATTGATGAGAGTG  575

seq1  TCAGAACATGCAATCTTGATAACCTGATAAAGTTCACAGAAGAAGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACATGCAATCTTGATAACCTGATAAAGTTCACAGAAGAAGTGGGG  625

seq1  AATTTCAAGAAATGTGCAGAAAGATAGACGCAATGTCATTAAGCCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAGAAATGTGCAGAAAGATAGACGCAATGTCATTAAGCCATGTA  675

seq1  GAAGGGCATCCACAATGCTAATGTACAAAGACAAAAAAATCATCACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCATCCACAATGCTAATGTACAAAGACAAAAAAATCATCACAAAA  725

seq1  CACAAATGGAGTTTCATGATGTCTGTGTAGCGAAGGGGATTGCAGATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGGAGTTTCATGATGTCTGTGTAGCGAAGGGGATTGCAGATGGC  775

seq1  CACATAACGGTCATAAGCCATTGCTGCAAGAAGAAAGTTTTCCATTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACGGTCATAAGCCATTGCTGCAAGAAGAAAGTTTTCCATTCCAG  825

seq1  CAAAAAGTAGGACAAAGCTAAGCTGGGTAATGCAGCCTGTGTAACTGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTAGGACAAAGCTAAGCTGGGTAATGCAGCCTGTGTAACTGATG  875

seq1  GATTTGCTCTGTTTCTGAAGGTTTGTCAGCATCTTAGGAACAGTGGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTCTGTTTCTGAAGGTTTGTCAGCATCTTAGGAACAGTGGTGGT  925

seq1  GCTGAAGCAGATATCAGTGAAGGACAGGTTTGAGAGGAAGAAGTACATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCAGATATCAGTGAAGGACAGGTTTGAGAGGAAGAAGTACATTG  975

seq1  GAGTGTGGAGGTGAGCGTCAGAGACAATGGCCAGGATGATGAGCAGGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGAGGTGAGCGTCAGAGACAATGGCCAGGATGATGAGCAGGTTC  1025

seq1  CCAGAGACTGTCACTAGGTACATAAGCAGGAACAGTCCAAAGAGGATGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTGTCACTAGGTACATAAGCAGGAACAGTCCAAAGAGGATGGG  1075

seq1  CTGAAGTTCTGGATCCTCTGAGAGGCCCAAGAGAAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTCTGGATCCTCTGAGAGGCCCAAGAGAAAGAATTC  1117