BAC Information

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BAC

Clone NameB6Ng01-039D18
Chromosome9 (Build37)11 (Build37)
Map Location 85,574,201 - 85,575,25380,105,222 - 80,105,305
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666672, BC023892
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039D18.bB6Ng01-039D18.g
ACCDH866559DH866560
length1,044699
definitionDH866559|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D18, 5' end.DH866560|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,574,201 - 85,575,253)(80,105,222 - 80,105,305)
sequence
gaattcctttgatggacaataataattcctacttgaccagagtatgaaat
cctgctgatttatataaaggacatggtagttggtgaagcagagattacaa
atgtagctactgtaattcttcagcagagcaagcctggaagaacagcagaa
tgttagagcacagagcccagcggctgtggaagagaacacagtctggcctc
ttttgtattagaacacaaacttgccttggttcataattatcctttaattt
tcataaaagtactgctgagctcacatgtgcttcacgtctacctgctcccc
agtggcttcagaaggcatccttccagttctcttatcaagcactgagagat
gtgtccttagtttcttctaagggagcaactacccatcaaagaattaccta
aaaaccaaaagaaagaaaacaaccaatagaaaattgtgacagtgaaaggc
ttcattctaagtatgaacagcaacaagccacaggccctaaatacactcac
acacacacaccaccaccaccaccaccaccagcaacaacaaacaacaaatc
cataaaaaacaacctggtttcaaaatagggaaaacccaactgctgtctca
ccatatgagggagtagagttggcaggtaagttcatgaaaacatgttcatt
agctggttgaaaaataacaattaaaaccacaatggtatatcattgcatac
ctatggccgtgtctaactaaaccaagaaataatgagaatgggaggttgca
atggcagaaggcagatacggagggatgaggagatgagtgggtttggggtt
cacgatgtgaaactcacaaagaatcaaaaacaaacaacaacacagaacag
tgaaaacatcaaatgttgcagtgtccctggaagaactgggtttcttattg
ctggtgggatggacactgatacagccattctggaaaccgccccggaacca
gcaattgcatctggagtattttttctagagaaaaaaaagtttacactagc
acaaactttacatggatgttcttagatttagctgtactaggaaa
gaattcattcccagtactgtggacttggtccagcgcccatggatggggag
ggcataggcactaggtgtaaactcattactgttgttttgctaagtggaca
tgttgtttatacaaaggctagtactaccctcatcattgatcaaagaagct
tctctttgctgcaaatgatgcttaattagagaaccccatgactagtaaat
gtgctaagagcaggtgactgaccatgctggaccttaaccaaaatacacac
gtcatccactctaaggctcgggaacaccgcagaagaaggaatagaaaata
ataagatccaggatgatggcaagaagggcatgagacaactgttttatgga
catggctatgagattaataaactcacagcagctgtggagggttttatata
ggatccatacaaagctgagaccatgaacagtcagtcataggtgggggaga
ggcccgtggggcccaaccttgcctgaggaaaatcattgtcctcagtgacg
ttgccatgagtgagtcactcaagtccccgtggacagctccacgcccatga
ccacatggttgtccctggttaatcccagtaggtctcaagcaaaaccaaaa
caaaaatacataaaccgccgggcagtggtggcacacgcctttaatcccag
cacttgggaggcagatgcaggcatatttctgagtggatgccagcctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_85574201_85575253
seq2: B6Ng01-039D18.b_44_1087 (reverse)

seq1  TTTCCTAGTACAGCT-AATCTAAGAACATCCATGTACAAGTTTTGTGTTA  49
      ||||||||||||||| |||||||||||||||||||| ||| |||||| ||
seq2  TTTCCTAGTACAGCTAAATCTAAGAACATCCATGTA-AAG-TTTGTGCTA  48

seq1  TGTGTAAACTTTTTTTTTTCTCTAGGAAAAATACT-CAGGTGCAATTGCT  98
       ||||||||  |||||||||||||| ||||||||| ||| ||||||||||
seq2  -GTGTAAAC--TTTTTTTTCTCTAGAAAAAATACTCCAGATGCAATTGCT  95

seq1  GGTTCCGGGGGCGGTTTTCCAGAATGGCTGTATCAGTGTTCATTCCCACC  148
      |||||| ||||||| |||||||||||||||||||||||| || |||||||
seq2  GGTTCC-GGGGCGG-TTTCCAGAATGGCTGTATCAGTGTCCA-TCCCACC  142

seq1  AGCAAATAAGAAACCCAGTTCTTCCAGGGACACTGCAACATTTGATGTTT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGC-AATAAGAAACCCAGTTCTTCCAGGGACACTGCAACATTTGATGTTT  191

seq1  TCACTGTTCTGTTGTTGTTGTTTGTTTTTTGATTCTTTGTGAGTTTCACA  248
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TCACTGTTCTG-TGTTGTTGTTTG-TTTTTGATTCTTTGTGAGTTTCACA  239

seq1  TCGTGAACCCCAAACCCACTCATCTCCTCATCCCTCCGTATCTGCCTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAACCCCAAACCCACTCATCTCCTCATCCCTCCGTATCTGCCTTCT  289

seq1  GCCATTGCAACCTCCCATTCTCATTATTTCTTGGTTTAGTTAGACACGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCAACCTCCCATTCTCATTATTTCTTGGTTTAGTTAGACACGGC  339

seq1  CATAGGTATGCAATGATATACCATTGTGGTTTTAATTGTTATTTTTCAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTATGCAATGATATACCATTGTGGTTTTAATTGTTATTTTTCAAC  389

seq1  CAGCTAATGAACATGTTTTCATGAACTTACCTGCCAACTCTACTCCCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATGAACATGTTTTCATGAACTTACCTGCCAACTCTACTCCCTCA  439

seq1  TATGGTGAGACAGCAGTTGGGTTTTCCCTATTTTGAAACCAGGTTGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGAGACAGCAGTTGGGTTTTCCCTATTTTGAAACCAGGTTGTTTT  489

seq1  TTATGGATTTGTTGTTTGTTGTTGCTGGTGGTGGTGGTGGTGGTGGTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATTTGTTGTTTGTTGTTGCTGGTGGTGGTGGTGGTGGTGGTGTG  539

seq1  TGTGTGTGAGTGTATTTAGGGCCTGTGGCTTGTTGCTGTTCATACTTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGAGTGTATTTAGGGCCTGTGGCTTGTTGCTGTTCATACTTAGA  589

seq1  ATGAAGCCTTTCACTGTCACAATTTTCTATTGGTTGTTTTCTTTCTTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCTTTCACTGTCACAATTTTCTATTGGTTGTTTTCTTTCTTTTG  639

seq1  GTTTTTAGGTAATTCTTTGATGGGTAGTTGCTCCCTTAGAAGAAACTAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGGTAATTCTTTGATGGGTAGTTGCTCCCTTAGAAGAAACTAAG  689

seq1  GACACATCTCTCAGTGCTTGATAAGAGAACTGGAAGGATGCCTTCTGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCTCTCAGTGCTTGATAAGAGAACTGGAAGGATGCCTTCTGAAG  739

seq1  CCACTGGGGAGCAGGTAGACGTGAAGCACATGTGAGCTCAGCAGTACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGGAGCAGGTAGACGTGAAGCACATGTGAGCTCAGCAGTACTTT  789

seq1  TATGAAAATTAAAGGATAATTATGAACCAAGGCAAGTTTGTGTTCTAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATTAAAGGATAATTATGAACCAAGGCAAGTTTGTGTTCTAATA  839

seq1  CAAAAGAGGCCAGACTGTGTTCTCTTCCACAGCCGCTGGGCTCTGTGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGGCCAGACTGTGTTCTCTTCCACAGCCGCTGGGCTCTGTGCTC  889

seq1  TAACATTCTGCTGTTCTTCCAGGCTTGCTCTGCTGAAGAATTACAGTAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTGCTGTTCTTCCAGGCTTGCTCTGCTGAAGAATTACAGTAGC  939

seq1  TACATTTGTAATCTCTGCTTCACCAACTACCATGTCCTTTATATAAATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGTAATCTCTGCTTCACCAACTACCATGTCCTTTATATAAATCA  989

seq1  GCAGGATTTCATACTCTGGTCAAGTAGGAATTATTATTGTCCATCAAAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTTCATACTCTGGTCAAGTAGGAATTATTATTGTCCATCAAAGG  1039

seq1  AATTC  1053
      |||||
seq2  AATTC  1044

seq1: chr11_80105222_80105305
seq2: B6Ng01-039D18.g_682_764 (reverse)

seq1  CCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGC  50
      |||||||||| ||  |||||||||| ||||||| |||||||||| |||||
seq2  CCAGGCTGGCATC-CACTCAGAAATATGCCTGCATCTGCCTCCCAAGTGC  49

seq1  TGGGATTAAAGGCGTGAGCCACCACCGCCCGGCG  84
      |||||||||||||||| |||||||| ||||||||
seq2  TGGGATTAAAGGCGTGTGCCACCACTGCCCGGCG  83