BAC Information

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BAC

Clone NameB6Ng01-039E05
Chromosome10 (Build37)9 (Build37)
Map Location 5,442,493 - 5,443,01181,877,021 - 81,877,843
singlet/doubletsingletsinglet
Overlap geneEsr1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E05.bB6Ng01-039E05.g
ACCDH866579DH866580
length1,016828
definitionDH866579|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E05, 5' end.DH866580|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,442,493 - 5,443,011)(81,877,021 - 81,877,843)
sequence
gaattcagttggaattttgatggggattgcattgaatctgtagattgctt
tcggcagtatagccattttgactatattaatcctgccaatccatgagcat
gggagatctttccatcttctgagatcttctttaatttctttcttcagaga
cttgaagttcttatcatacagatctttcacttccttagttagagtcacac
caaggtattttatattatttgactattgtgaaggatgttgtttccctaat
ttatttctcatcctgtttaacctttgtgtagagaaaggccactgatttgt
ttgagttaattttatatacagctactgcaatggagctgtttatcaggttg
aggagttctctggtggaatttttagggtcacttatatatactatcatcgt
gtgaaaacagtgatattttgagttcttcctttctaatttgtatccccttg
atctccttttgttgtcgaattgctctggctagaacttcaagtactatatt
gaataggtagggagaaagtgggcagccttttctagtccctgattttagtg
gtattgcttcgagtttctctccatttagtttgatgttggctactggtttg
ctatatattgcttttattatgtttaggtatgggccttgaattcctgctct
ttctaagacttttatcatgaaggggtgtttgagtttgtcaaatgctttct
cagcatctaaagagatgatcatatggtttttgtctttgagtttgtttata
tagtgtattacgttgatggatttccatatgttgaaccatccctgcatccc
tgggatgaagcctacttggtcatgatggatgatcgttttgagtgttcttg
gatttcgtttgcgaggatttattgaatatttttgcatcgatattcataag
ggaattggtgaagttctctttctttgtagatcttggtttgtttaggtatc
agagtaattgtgggctcttagatgaatgggggagagtaccaatagtttct
attttgtggaatagtt
gaattcctaaattttgagggatactaacaaaggcacagagtttcttagaa
aagtaagcattctcttaagtcaccaattggcctcacaattaaataactat
ggtcacattagaaaaaattatccgtggatgttacttttatctctgtgaca
gtttagataataaatgtcgcctgtaggccccagtgttcggtggtggtgtt
tggggaggcttagggagtgtgcccttgctggaggaagtgtgtcactgggg
gcgggcttgggaatgtaaaacctccactacttgtgctttgtgctctgctt
tgtgcttccatttggtgatatgagttctcagctacatgatcttgcctatt
gctcattcccatgcctccctcccaagatgggctcttatccctttgttcag
agattttgaaagaattatatcgcgttaaaatggagattgaaatatccaag
gaagagaaatactcagcggctaaattataggtacaaaatcattgacactc
ttccaaaatacacacactttaaaatggtcttttctaaatatagaatctga
agtagtacacgagaaaaattatagtgttttaaatttgcatattttatgag
tgaagaactgtgacttttgagttataaatattttattttgaagagaaaaa
attcttcttgcatatcagatgtatgttgactgaatatgaaactccaagtt
taatttcattttacaccaatattttttctctttagatgcagtttctactg
ttgtctactctgcatgtttgtgggtaacagtagctaaactattaaaatga
aaagtacatttgggaacattgataatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5442493_5443011
seq2: B6Ng01-039E05.b_543_1053 (reverse)

seq1  AACTATTCCACAAAATAGAAACAGAAGGTACTCTACGCAACTCATTCTAT  50
      ||||||||||||||||||||||    |||||||| | | | ||| |||| 
seq2  AACTATTCCACAAAATAGAAACTATTGGTACTCTCCCCCATTCA-TCTAA  49

seq1  GAAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCCACAAAGAT  100
      ||  ||||||||||||||||||||||| || |  ||||  | ||||||| 
seq2  GAGCCCACAATTACTCTGATACCTAAA-CAAACCAAGA-TCTACAAAGAA  97

seq1  AGAGAACTTCAGACCAATATCCCTTATGAATATCGATGCAAAAATCCTCA  150
      ||||||||||  |||||| ||||||||||||||||||||||||||  |||
seq2  AGAGAACTTC--ACCAAT-TCCCTTATGAATATCGATGCAAAAATATTCA  144

seq1  ATAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATCATCCAT  200
      ||||| | || || |||  ||||||||||||| ||||||| |||||||||
seq2  ATAAA-TCCTCGCAAACGAAATCCAAGAACAC-TCAAAACGATCATCCAT  192

seq1  CCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATATG  250
      | |||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CATGACCAAGTAGGCTTCATCCCAGGGATGCAGGGATGGTTCAACATATG  242

seq1  GAAATCCATCAACGTAATCCATTATATAAACAAACTCAAAGACAAAAACC  300
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  GAAATCCATCAACGTAATACACTATATAAACAAACTCAAAGACAAAAACC  292

seq1  ACATGATCATCTCATTAGATGCTGAGAAAGCATTTGACAAAATCCAACAC  350
      | ||||||||||| ||||||||||||||||||||||||||| || |||||
seq2  ATATGATCATCTCTTTAGATGCTGAGAAAGCATTTGACAAACTCAAACAC  342

seq1  CCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATAACT  400
      || ||||||||||||||||| |||||| ||||||||||||||||||| ||
seq2  CCCTTCATGATAAAAGTCTTAGAAAGAGCAGGAATTCAAGGCCCATACCT  392

seq1  AAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAGCATCAAAGTAA  450
      |||||| ||||||||||| || |||||||||||||||| ||||||| |||
seq2  AAACATAATAAAAGCAATATATAGCAAACCAGTAGCCAACATCAAACTAA  442

seq1  ATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGC  500
      |||| ||||| || |||||||| ||||||||||||||||||||| |||||
seq2  ATGGAGAGAAACTCGAAGCAATACCACTAAAATCAGGGACTAGAAAAGGC  492

seq1  TGTCCACTCTTGCCCTACC  519
      || ||||| |  |||||||
seq2  TGCCCACTTTCTCCCTACC  511

seq1: chr9_81877021_81877843
seq2: B6Ng01-039E05.g_66_893

seq1  GAATTCCTAAATTTTGAGGGATACTAACAAAGGCACAGAGTTTCTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATTTTGAGGGATACTAACAAAGGCACAGAGTTTCTTAGAA  50

seq1  AAGTAAGCATTCTCTTAAGTCACCAATTGGCCTCACAATTAAATAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCATTCTCTTAAGTCACCAATTGGCCTCACAATTAAATAACTAT  100

seq1  GGTCACATTAGAAAAAATTATCCGTGGATGTTACTTTTATCTCTGTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATTAGAAAAAATTATCCGTGGATGTTACTTTTATCTCTGTGACA  150

seq1  GTTTAGATAATAAATGTCGCCTGTAGGCCCCAGTGTTCGGTGGTGGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATAATAAATGTCGCCTGTAGGCCCCAGTGTTCGGTGGTGGTGTT  200

seq1  TGGGGAGGCTTAGGGAGTGTGCCCTTGCTGGAGGAAGTGTGTCACTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGCTTAGGGAGTGTGCCCTTGCTGGAGGAAGTGTGTCACTGGGG  250

seq1  GCGGGCTTGGGAATGTAAAACCTCCACTACTTGTGCTTTGTGCTCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTTGGGAATGTAAAACCTCCACTACTTGTGCTTTGTGCTCTGCTT  300

seq1  TGTGCTTCCATTTGGTGATATGAGTTCTCAGCTACATGATCTTGCCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCCATTTGGTGATATGAGTTCTCAGCTACATGATCTTGCCTATT  350

seq1  GCTCATTCCCATGCCTCCCTCCCAAGATGGGCTCTTATCCCTTTGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCCCATGCCTCCCTCCCAAGATGGGCTCTTATCCCTTTGTTCAG  400

seq1  AGATTTTGAAAGAATTATATCGCGTTAAAATGGAGATTGAAATATCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAAAGAATTATATCGCGTTAAAATGGAGATTGAAATATCCAAG  450

seq1  GAAGAGAAATACTCAGCGGCTAAATTATAGGTACAAAATCATTGACACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAATACTCAGCGGCTAAATTATAGGTACAAAATCATTGACACTC  500

seq1  TTCCAAAATACACACACTTTAAAATGGTCTTTTCTAAATATAGAATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATACACACACTTTAAAATGGTCTTTTCTAAATATAGAATCTGA  550

seq1  AGTAGTACACGAGAAAAATTATAGTG-TTTAAATTTGCATATTTTATGAG  599
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTAGTACACGAGAAAAATTATAGTGTTTTAAATTTGCATATTTTATGAG  600

seq1  TGAAGAACTGTGACTTTTGAGTTATAAATATTTTATTTTGAAGAG-AAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAAGAACTGTGACTTTTGAGTTATAAATATTTTATTTTGAAGAGAAAAA  650

seq1  ATTCTTCTTGCATATCAGATGTATGTTGACTGAAGATGAAGCTCCAAGTT  698
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  ATTCTTCTTGCATATCAGATGTATGTTGACTGAATATGAAACTCCAAGTT  700

seq1  TAATTTCATTTTACACCAATA-TTTTTCTCTTTAGATGCAGTTTCTACTG  747
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATTTCATTTTACACCAATATTTTTTCTCTTTAGATGCAGTTTCTACTG  750

seq1  TTGTCTACTCAGCATGTTTGTGGG-AACAGTAGCCAAACTATTAAAATGA  796
      |||||||||| ||||||||||||| ||||||||| |||||||||||||||
seq2  TTGTCTACTCTGCATGTTTGTGGGTAACAGTAGCTAAACTATTAAAATGA  800

seq1  AAAGTACATTT-GGAACATTGATAAGGA  823
      ||||||||||| ||||||||||||| ||
seq2  AAAGTACATTTGGGAACATTGATAATGA  828