BAC Information

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BAC

Clone NameB6Ng01-039K15
Chromosome9 (Build37)
Map Location 20,317,681 - 20,318,663
singlet/doubletsinglet
Overlap gene5730601F06Rik
Upstream geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426
Downstream gene7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039K15.bB6Ng01-039K15.g
ACCDH866869DH866870
length1,279982
definitionDH866869|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K15, 5' end.DH866870|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggtggagaagattccatagggagcatggacacaacaatcaaa
gaaaatgcaaaaggcaaaaagatcctaacccaaaacatccaggaaatgca
ggacacaatgagaagaccaaaactatgaataataagagcaaatgagaatg
aagattttcaacttaaagggccagcaaatatcttcaacaaaattatagaa
gaaaacttcccaaacctaaagaaagagatgtccatgaacatacaagaagt
ctacagaactccaaatagactggatcagaaaggaaattcctcctgacaca
taatattcagaacaacaaatgcactaaatggagataaaatattaaaagca
gtaagggaaaaaggtcaagtaacatataaaggcaggcctattagaattac
accaaacttcttaccagagactatgaaagccagaagatcctggaaagata
ttatacagaccctaagagaacacaaatgccagcccaggctactatgccca
gcaaaaatctcaattactgtagatggagaaaccaaagtattccatgataa
aaccaaattcacacaatatctttccatgaacccaacccttcaaggataat
aaaaggaaaacaccaacacaaggatgaaaactacaccttagaaaaagcaa
gaaagtaatccttcaacaaacctaaaagaatttaactgcaagaacagaat
tccaactttaacaacaaaaatatcaggaagcaacaattacttttctttaa
tttcttttaacatcaatggactcaattcctgttacctccttccagcctag
caaggctggctgagaccattcgctacttaggcagagccacctgctgtgct
gcttctcatccctctcctttgatatgccactacccgctacctgcctgagg
ctgaaactgttcaccaagatcttccagagttagcacataactgcgatctt
tgcaagttcctactaaaagctgatctgacaacttcaaaggactttgtgtg
actgggaataggcctcccctcttctttataaagcttgtttgccgacatta
aagttgaacctgatcagaacactgtctggtcatcttttcccggtgccagg
tttccctctcttcagtcagatgcttcaggctcgaccggaaatgggagcct
gcaggcgtcctaaaattccattagaccgaactatgactgctaacaaagga
caacttgccgctcggaacccctaggaagacagcctccaaggtaaggcgtg
aacaggttcgcatgttcgagacaccacgg
gaattccaagatgcactgcaaacagctcaagtacatcccctttaccttgt
gtaaggggtgaagccaggccttggagctgccaggtgagcactcggtacta
ctgagtgcatcctgccagtgaacctacgggattcggcaggtcacagatac
ctgataccttgtaacctttcagacaaggcagtccagtgtgtgtgtatgag
agagacagagacagccagatagagagatagacaggagaggagggggcaga
tagagacaggctctgttgcctaagctgacttggaattcccttccaagtgt
tggagttaaaagtgtgtgctccatacccatagtaacttcatacagatgtt
cttgtcaccagtcttgtctttgtatacccttgattgtccagacaaatggt
gggcagttccttatgagtcactgtacatgtgtcctggcaaggcaaacagc
aaacattcattcatcttctgctttttaaaaacatctgtgtgtatgacata
tgtgtttatatgaagtgtgagtgtgtgcgtatgactgtggagtcagggta
acctcaggtgagagagggagaggagtttgtgtgtgtgagagtgatgcctc
tgagttttctctttccactataggtttaggaattaactcaggctgtcagt
cttaacccactgagtcatattgctagcctagtaatcccttcttttaattt
gctgctaggtagcctatacctgggaacagtgatagaagggttttattcag
aatacaaaaatttattttttatgaggcaaggtcttgtgtatcccaggctc
gcctagaactcactcgctagccaaggatgacgctgttcctcgccttccac
gtgctgggtttacagtctcctcagcagcctggctaccgtgctggggatgt
aacccaggtttcattgagtgctaagcagcatgttgcagctggagctacat
cctcgaactgttctttttatggaattattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20317681_20318663
seq2: B6Ng01-039K15.g_66_1047 (reverse)

seq1  AAAAATAAATCCTATAAAAAGAAACAGTCTGAGGATGTAGCT-CAGCTGC  49
      |||||||| ||| |||||||| ||||||  |||||||||||| |||||| 
seq2  AAAAATAATTCC-ATAAAAAG-AACAGTTCGAGGATGTAGCTCCAGCTG-  47

seq1  CAGCATGCTTGCCTAGCACTC-ATGGAACCCTGGTTACATCCCCAGCACG  98
      || ||||| ||| |||||||| ||| ||||  ||||||||||||||||||
seq2  CAACATGC-TGCTTAGCACTCAATGAAACCTGGGTTACATCCCCAGCACG  96

seq1  GTAGCCAGGCTGCTGAGGAGACTGTAAACCCAGCACGTGGAAGGCGAGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGGCTGCTGAGGAGACTGTAAACCCAGCACGTGGAAGGCGAGGA  146

seq1  ACAGCGTCATCCTTGGCTAGCGAGTGAGTTCTAGGCGAGCCTGGGATACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTCATCCTTGGCTAGCGAGTGAGTTCTAGGCGAGCCTGGGATACA  196

seq1  CAAGACCTTGCCTCATAAAAAATTAATTTTTGTATTCTGAAT-AAACCCT  247
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CAAGACCTTGCCTCATAAAAAATAAATTTTTGTATTCTGAATAAAACCCT  246

seq1  TCTATCACTGTTCCCAGGTATAGGCTACCTAGCAGCAAATTAAAAGAAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCACTGTTCCCAGGTATAGGCTACCTAGCAGCAAATTAAAAGAAGG  296

seq1  GATTACTAGGCTAGCAATATGACTCAGTGGGTTAAGACTGACAGCCTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTAGGCTAGCAATATGACTCAGTGGGTTAAGACTGACAGCCTGAG  346

seq1  TTAATTCCTAAACCTATAGTGGAAAGAGAAAACTCAGAGGCATCACTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTAAACCTATAGTGGAAAGAGAAAACTCAGAGGCATCACTCTC  396

seq1  ACACACACAAACTCCTCTCCCTCTCTCACCTGAGGTTACCCTGACTCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACTCCTCTCCCTCTCTCACCTGAGGTTACCCTGACTCCAC  446

seq1  AGTCATACGCACACACTCACACTTCATATAAACACATATGTCATACACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACGCACACACTCACACTTCATATAAACACATATGTCATACACAC  496

seq1  AGATGTTTTTAAAAAGCAGAAGATGAATGAATGTTTGCTGTTTGCCTTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTTAAAAAGCAGAAGATGAATGAATGTTTGCTGTTTGCCTTGC  546

seq1  CAGGACACATGTACAGTGACTCATAAGGAACTGCCCACCATTTGTCTGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACATGTACAGTGACTCATAAGGAACTGCCCACCATTTGTCTGGA  596

seq1  CAATCAAGGGTATACAAAGACAAGACTGGTGACAAGAACATCTGTATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGGGTATACAAAGACAAGACTGGTGACAAGAACATCTGTATGAA  646

seq1  GTTACTATGGGTATGGAGCACACACTTTTAACTCCAACACTTGGAAGGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATGGGTATGGAGCACACACTTTTAACTCCAACACTTGGAAGGGA  696

seq1  ATTCCAAGTCAGCTTAGGCAACAGAGCCTGTCTCTATCTGCCCCCTCCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGTCAGCTTAGGCAACAGAGCCTGTCTCTATCTGCCCCCTCCTC  746

seq1  TCCTGTCTATCTCTCTATCTGGCTGTCTCTGTCTCTCTCATACACACACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTATCTCTCTATCTGGCTGTCTCTGTCTCTCTCATACACACACA  796

seq1  CTGGACTGCCTTGTCTGAAAGGTTACAAGGTATCAGGTATCTGTGACCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGCCTTGTCTGAAAGGTTACAAGGTATCAGGTATCTGTGACCTG  846

seq1  CCGAATCCCGTAGGTTCACTGGCAGGATGCACTCAGTAGTACCGAGTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATCCCGTAGGTTCACTGGCAGGATGCACTCAGTAGTACCGAGTGCT  896

seq1  CACCTGGCAGCTCCAAGGCCTGGCTTCACCCCTTACACAAGGTAAAGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCAGCTCCAAGGCCTGGCTTCACCCCTTACACAAGGTAAAGGGG  946

seq1  ATGTACTTGAGCTGTTTGCAGTGCATCTTGGAATTC  983
      ||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGAGCTGTTTGCAGTGCATCTTGGAATTC  982