BAC Information

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BAC

Clone NameB6Ng01-040D16
Chromosome9 (Build37)
Map Location 25,914,534 - 25,915,679
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D16.bB6Ng01-040D16.g
ACCDH867262DH867263
length8561,136
definitionDH867262|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D16, 5' end.DH867263|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagctctgtactccatttttaattgatttatttaggtt
attagtgtttaacttcttgagttctttatatattttagggtgccatttat
taactgttgatcttagtatctgaactattagtgttcaggaactatttgtt
cagggggctgtctcctataccattgagttcaaggttattccccactttct
cttctatcaggtttagtgtatctggttttatgttgaggtctttgatccac
ttggacttgagttttgttcagggtaatagatatggatatttgctttcttt
tacatgcagacatccaattggactggcactatttggtgaagatgctttct
tttttccattatatgattttggcttctttgtcaaaaatcaagtgtccata
gataagtggattcacttctgtgtctttgatttgattccattgatcggctt
gtttgtttttatgccaataccatgtggttttcttactattgttgtgtagt
acaggttgaaatcaggaatgatgattcctccagaagttcttttatagtac
aagactgttttagttattttgggtggttttttcttcccatatggatttga
atattgttcgggaagaattatgtgaaaattgtaaagagaattgcattaaa
tctgtgaattgtttttggtaagatggacatttttgctatattaatcctac
ttatccattagcttgggaaaactttccatcttttgatatctttaatttgt
ttcctttaaagacttgaagtttttgtcatacaggtatttttcttgcttga
ctagagttacaccaagttattttatattattagtggatattgtgaagggg
tgttat

gaattcatgtttaccaaaccactcctacagagaatactggaagcaataat
ttaaatgtgagaaagaaaaagtagagcccagccaaagtagaaaaaaataa
attaaattataattactgaaacacaaaggatctgtatagcataactatag
ttttcaatagactgggaagtgagctctgagcatcagatttctgtaaccaa
gggtagaaaagaaagaccttagagaaagaggactttacagaagagatgat
atcagaactagtaagtccatgtagtggggagagagagagacagagagaca
gaaagacagaaccagagagacagagacagagagaaacgtgaatcaaagtg
aactcatcatgtagtgccaggtatggttatttctatttcatcagctctgt
ctttcactgatttttgagctagtctcagaagattctagcccaactttctc
aaaacctgaatgaaatccagtatttctagatatgaagggagaaattatcc
tattaaaggatagtgcaaatggctcctatcttttagttgctatcattctc
atagaaccactgttttgactgaattattattgtggttaatattcatttca
cagaaatttcaggaaacaatgtcaacaaaatgcaaatatacacatgttag
catctcatttagaaatgaatttttcatttatctttactttgccttcacat
tcttacaaggttaaaataatactcccttgagtatcccttggtaattctta
tagacattatacattaatttgtgacataaatttagacttgattctgtgat
gctttaaaacctaacctctagttagaaaatgtccagcatttcccatgtga
agacctttcccgaaaatggatttgggctgtatttaatgtgccctggtgtg
ccttataactcaccaccatgtgtgtggtttgatcagtaaaacaaagaaaa
cagtttctgtagaaagtgtgtaaaaattcagtatcatcttgcatttccat
acaccttttggtaccctttccatggtagctacctactagttagactctgg
agcagcaccctgaccatgctgtgatccactttataaggagatggacattt
ggtggaaatccttgcctgatgccattctactttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25914534_25915679
seq2: B6Ng01-040D16.g_68_1203 (reverse)

seq1  TTGAAAGTAGGATATGGCACTCAGGCAAGGATTTTCACCAAATGTCCATC  50
      ||||||||||   |||||| |||||||||||||| |||||||||||||||
seq2  TTGAAAGTAG--AATGGCA-TCAGGCAAGGATTTCCACCAAATGTCCATC  47

seq1  TTCTTTATAAAGTGGATCTAACAGCATGGTCAGGGTGCTGGCTCCAGAGT  100
       || ||||||||||||||  ||||||||||||||||||| ||||||||||
seq2  -TCCTTATAAAGTGGATC--ACAGCATGGTCAGGGTGCT-GCTCCAGAGT  93

seq1  CTAAACTAGTAGGTAGCTACCATGG-AAGGGTACCAAAAGTGTTATAGAT  149
      || |||||||||||||||||||||| ||||||||||||||   ||| || 
seq2  CT-AACTAGTAGGTAGCTACCATGGAAAGGGTACCAAAAGGTGTATGGAA  142

seq1  ATGCAAGATGAATACTGAATTTTTACACACTTTTCTTACAGAAACTGTTT  199
      |||||||||| ||||||||||||||||||||||   ||||||||||||||
seq2  ATGCAAGATG-ATACTGAATTTTTACACACTTT--CTACAGAAACTGTTT  189

seq1  TCTTTGTTTTACTGATCAAACCACACACATGGTGGTGAGTTATAAGGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTACTGATCAAACCACACACATGGTGGTGAGTTATAAGGCAC  239

seq1  ACCAGGGCACATTAAATACAGCCCAAATCCATTTTCGGGAAAGGTCTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCACATTAAATACAGCCCAAATCCATTTTCGGGAAAGGTCTTCA  289

seq1  CATGGGAAATGCTGGACATTTTCTAACTAGAGGTTAGGTTTTAAAGCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAATGCTGGACATTTTCTAACTAGAGGTTAGGTTTTAAAGCATC  339

seq1  ACAGAATCAAGTCTAAATTTATGTCACAAATTAATGTATAATGTCTATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCAAGTCTAAATTTATGTCACAAATTAATGTATAATGTCTATAA  389

seq1  GAATTACCAAGGGATACTCAAGGGAGTATTATTTTAACCTTGTAAGAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACCAAGGGATACTCAAGGGAGTATTATTTTAACCTTGTAAGAATG  439

seq1  TGAAGGCAAAGTAAAGATAAATGAAAAATTCATTTCTAAATGAGATGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAAAGTAAAGATAAATGAAAAATTCATTTCTAAATGAGATGCTA  489

seq1  ACATGTGTATATTTGCATTTTGTTGACATTGTTTCCTGAAATTTCTGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTATATTTGCATTTTGTTGACATTGTTTCCTGAAATTTCTGTGA  539

seq1  AATGAATATTAACCACAATAATAATTCAGTCAAAACAGTGGTTCTATGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATTAACCACAATAATAATTCAGTCAAAACAGTGGTTCTATGAG  589

seq1  AATGATAGCAACTAAAAGATAGGAGCCATTTGCACTATCCTTTAATAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGCAACTAAAAGATAGGAGCCATTTGCACTATCCTTTAATAGGA  639

seq1  TAATTTCTCCCTTCATATCTAGAAATACTGGATTTCATTCAGGTTTTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCCCTTCATATCTAGAAATACTGGATTTCATTCAGGTTTTGAG  689

seq1  AAAGTTGGGCTAGAATCTTCTGAGACTAGCTCAAAAATCAGTGAAAGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGCTAGAATCTTCTGAGACTAGCTCAAAAATCAGTGAAAGACA  739

seq1  GAGCTGATGAAATAGAAATAACCATACCTGGCACTACATGATGAGTTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGAAATAGAAATAACCATACCTGGCACTACATGATGAGTTCAC  789

seq1  TTTGATTCACGTTTCTCTCTGTCTCTGTCTCTCTGGTTCTGTCTTTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCACGTTTCTCTCTGTCTCTGTCTCTCTGGTTCTGTCTTTCTGT  839

seq1  CTCTCTGTCTCTCTCTCTCCCCACTACATGGACTTACTAGTTCTGATATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTCTCTCTCCCCACTACATGGACTTACTAGTTCTGATATC  889

seq1  ATCTCTTCTGTAAAGTCCTCTTTCTCTAAGGTCTTTCTTTTCTACCCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTGTAAAGTCCTCTTTCTCTAAGGTCTTTCTTTTCTACCCTTG  939

seq1  GTTACAGAAATCTGATGCTCAGAGCTCACTTCCCAGTCTATTGAAAACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAAATCTGATGCTCAGAGCTCACTTCCCAGTCTATTGAAAACTA  989

seq1  TAGTTATGCTATACAGATCCTTTGTGTTTCAGTAATTATAATTTAATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGCTATACAGATCCTTTGTGTTTCAGTAATTATAATTTAATTTA  1039

seq1  TTTTTTTCTACTTTGGCTGGGCTCTACTTTTTCTTTCTCACATTTAAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTACTTTGGCTGGGCTCTACTTTTTCTTTCTCACATTTAAATT  1089

seq1  ATTGCTTCCAGTATTCTCTGTAGGAGTGGTTTGGTAAACATGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCCAGTATTCTCTGTAGGAGTGGTTTGGTAAACATGAATTC  1136


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