BAC Information

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BAC

Clone NameB6Ng01-040H09
Chromosome9 (Build37)
Map Location 19,178,213 - 19,179,336
singlet/doubletsinglet
Overlap genenone
Upstream geneNaalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697
Downstream geneOlfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040H09.bB6Ng01-040H09.g
ACCDH867422DH867423
length1,1121,167
definitionDH867422|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H09, 5' end.DH867423|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgatgagtaagcatgtttgagttttcctgtggtatttttatat
gtcatataaaatttgtgaatgtgttatttttaatttgttaatttcataat
atttgtcatttttacagttttgaaatgtgatattaactatatataggata
tattttttcatgcgaaatatcagaaagatgtaaaaatcttcacattttac
taattttatcattatagaacaagatctagatatgtaaatatattcataga
tataaatcacacccatacactctaaaaattttacttgtgttatttttcca
aatattatatatattatctttttacaactattaagtgtatgagcacacaa
atgtaatttcctcatgagaccagatggtttacatacttctggtactaaag
ttataacctattttaagctgcctgacattgatgtgttggttcaaagtcag
gttctctgaacatacagtatatatactccttatctgtgagtcattactat
agcctctatgtttttttattattattctaataatattcctgggctggtga
aatgactcagtgggtaagagcactcaactgctcttctgaaggtctgacgt
tcaaatcccagcaaccacatagtggctcacaacacccgtaatgagatatg
actccctcttctggagtgtctgaaaacagctacagtgtacttacatataa
taaataaataaataaataaataaataaataaataaataaataaataaaat
attcctcccagctttttagacagctgccgaagaaagtttatccctttttt
ccatagtttttgtacttactatacatttaaaattattttatactagttaa
ttgatatgtcaacgatgaaagtttgcttagttttccccaggtccttttgt
tcttcatgcatactgctttgcagtgttcagaagttaaactcttcctagga
aaacatccctacatatggcatcatatccataactcttcataagtctagct
ttatattataaggagcaatggttgccaaatccttgggggagcaccacctc
atgatgaaaaatatttcttaaatatcattattaggagagaacatgggaaa
gcattagtactg
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccttctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
aaatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacaaaaaacgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattaagccagaaat
ttagtatagcgagatataaggtacaatatgtaaaacatatgaaactgaag
aagaacgaagaccaaagtgtttacactttgctcatttttagaattggaaa
caatcacccatggaaggagttacggagacaaagtttggagctgagacaaa
aggatggtccatctagagactgccatatccagggatccatcccataatta
gcctccaaacgatgacaccattgcatacactagcaagcctttgttgctag
gacggtgatatagctgtcccttgtgagactaggccggggcctagcaaaca
cagaagtggatgctcacagtcactattgaatggatcacagggcccccaat
ggagagtagagaaagtatcaaaggagctaagaagatcttgcaaccctatc
ggagacaacattatgaactaaccagtaccccagagctctttgactctgct
gctttgttcaaagctgacctatcgtctatcactggaagagagtcattgtc
agcaacgttaatgccctagtacggagaagccagggccaaaatgggaatgg
tggggtaagggaaagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19178213_19179336
seq2: B6Ng01-040H09.b_47_1158 (reverse)

seq1  CAGTACTAAATGCTTTCCCATGTTCTCTCCTAATAATTGAATAATCTAAG  50
      ||||||| |||||||||||||||||||||||||||| |||   || ||||
seq2  CAGTACT-AATGCTTTCCCATGTTCTCTCCTAATAA-TGA--TATTTAAG  46

seq1  AAATATTTTTTTCATTCATGA-GTGGTGCT-CCCCAAGGATTTTGGCAAC  98
      |||||  ||||||| |||||| |||||||| ||||||||| |||||||| 
seq2  AAATA--TTTTTCA-TCATGAGGTGGTGCTCCCCCAAGGA-TTTGGCAA-  91

seq1  CCATTGCTTCCTTATTAATTATAAAGCTAGACTTATGAAGAGTTATGGAT  148
      ||||||| |||||||  | |||||||||||||||||||||||||||||||
seq2  CCATTGC-TCCTTAT--AATATAAAGCTAGACTTATGAAGAGTTATGGAT  138

seq1  ATTGATGCCATATGTAGGGATTGTTTTCCTAGGAAGAGTTTAACTTCTGA  198
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  A-TGATGCCATATGTAGGGA-TGTTTTCCTAGGAAGAGTTTAACTTCTGA  186

seq1  ACACTGCAAAGCAGTATGCATGAAGAACAAAAGGACCTGGGGAAAACTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAAAGCAGTATGCATGAAGAACAAAAGGACCTGGGGAAAACTAA  236

seq1  GCAAACTTTCATCGTTGACATATCAATTAACTAGTATAAAATAATTTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTCATCGTTGACATATCAATTAACTAGTATAAAATAATTTTAA  286

seq1  ATGTATAGTAAGTACAAAAACTATGGAAAAAAGGGATAAACTTTCTTCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGTAAGTACAAAAACTATGGAAAAAAGGGATAAACTTTCTTCGG  336

seq1  CAGCTGTCTAAAAAGCTGGGAGGAATATTTTATTTATTTATTTATTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCTAAAAAGCTGGGAGGAATATTTTATTTATTTATTTATTTATT  386

seq1  TATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTG  436

seq1  TTTTCAGACACTCCAGAAGAGGGAGTCATATCTCATTACGGGTGTTGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGACACTCCAGAAGAGGGAGTCATATCTCATTACGGGTGTTGTGA  486

seq1  GCCACTATGTGGTTGCTGGGATTTGAACGTCAGACCTTCAGAAGAGCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTATGTGGTTGCTGGGATTTGAACGTCAGACCTTCAGAAGAGCAGT  536

seq1  TGAGTGCTCTTACCCACTGAGTCATTTCACCAGCCCAGGAATATTATTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTCTTACCCACTGAGTCATTTCACCAGCCCAGGAATATTATTAG  586

seq1  AATAATAATAAAAAAACATAGAGGCTATAGTAATGACTCACAGATAAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAAAAAAACATAGAGGCTATAGTAATGACTCACAGATAAGGA  636

seq1  GTATATATACTGTATGTTCAGAGAACCTGACTTTGAACCAACACATCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATACTGTATGTTCAGAGAACCTGACTTTGAACCAACACATCAAT  686

seq1  GTCAGGCAGCTTAAAATAGGTTATAACTTTAGTACCAGAAGTATGTAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCAGCTTAAAATAGGTTATAACTTTAGTACCAGAAGTATGTAAAC  736

seq1  CATCTGGTCTCATGAGGAAATTACATTTGTGTGCTCATACACTTAATAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGTCTCATGAGGAAATTACATTTGTGTGCTCATACACTTAATAGT  786

seq1  TGTAAAAAGATAATATATATAATATTTGGAAAAATAACACAAGTAAAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGATAATATATATAATATTTGGAAAAATAACACAAGTAAAATT  836

seq1  TTTAGAGTGTATGGGTGTGATTTATATCTATGAATATATTTACATATCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTGTATGGGTGTGATTTATATCTATGAATATATTTACATATCTA  886

seq1  GATCTTGTTCTATAATGATAAAATTAGTAAAATGTGAAGATTTTTACATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGTTCTATAATGATAAAATTAGTAAAATGTGAAGATTTTTACATC  936

seq1  TTTCTGATATTTCGCATGAAAAAATATATCCTATATATAGTTAATATCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATATTTCGCATGAAAAAATATATCCTATATATAGTTAATATCAC  986

seq1  ATTTCAAAACTGTAAAAATGACAAATATTATGAAATTAACAAATTAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAACTGTAAAAATGACAAATATTATGAAATTAACAAATTAAAAA  1036

seq1  TAACACATTCACAAATTTTATATGACATATAAAAATACCACAGGAAAACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATTCACAAATTTTATATGACATATAAAAATACCACAGGAAAACT  1086

seq1  CAAACATGCTTACTCATCAAGAATTC  1124
      ||||||||||||||||||||||||||
seq2  CAAACATGCTTACTCATCAAGAATTC  1112