BAC Information

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BAC

Clone NameB6Ng01-040I11
Chromosome9 (Build37)
Map Location 35,924,579 - 35,925,616
singlet/doubletsinglet
Overlap genenone
Upstream geneDcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik
Downstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I11.bB6Ng01-040I11.g
ACCDH867464DH867465
length1,0051,085
definitionDH867464|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I11, 5' end.DH867465|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtcg
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttattacaattgc
tctgtagtaaagctttaggtctggaatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaattctttcttcagagatttgaagtttttatcatac
agatctttcacctcttagttagagtcacgccagatattttatatattttg
ggactttggagaaggggtggttccctaaatccttttcgtgcggtaatcct
gtata
gaattccactgtgtttataaatatgacattttctttatccatttatctct
tgatatatttctaagctggtacaatgtctgatatgttgtgaacacaaata
ctacaatgataatcatggacatatcagtgtctctgagtagtaacttaaat
ttcttggagaatatgccaaagaataatataactaagtcataagatggttc
tatttctagtttgtaaaggacctccttggtgattttcatagtggttgtgt
aagactacattcctatggtgataaaagtttcattttctcaacatcctggg
cacactctgttctccattgttttcctggtgacaggcattctggctgtggt
gaaacagaatctcaaagcaggttaactttgaatttctctaatggctaaaa
attttgacaacttttcaaaatcttttggaccttatagtttttatctttga
gaagtatctgctcaatttgctagcccattcaagtgaatcatttttgatac
ttaatgcttacccaatggtttattttacgtgttgatgacttttcagcctt
tatgctcttctgtctttgatgactgcttccctttctgcacatgagacctc
tccaacttctagtgtctttcactctctttcttcagtactgtaagattttc
actatagtagtctccctttcctaaggtttgtttataaaatactcatgtat
tttaaaccattataaatatgacattcccccagattgttttctaagttaac
tcatgattgtcatgtacaaaacttggcatgtctctctgcacagcattgct
taaatcttactaattttttgaaagtgtctaagggttctgggagttttcag
ctggagtctctctgaagacatcatcaaatacgaattcattgattgcttta
tttcccgttaatattcctatttctttcttactgctttcttattgctttgg
ctgagtcattgacaaatatatcaaattaggagtgaagagtgggaaattgt
gtctgttataaaaaatggtttccggggtttcctgtttaatatggtttatg
aaaaattctctatagctttcttaggtgaggatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35924579_35925616
seq2: B6Ng01-040I11.g_121_1150 (reverse)

seq1  CACATACCTCAACCTAAGAAATGCTATAGAGAATATTTTCATAAGCATTA  50
      ||||| |||| |||||||||| |||||||||||| ||||||||| |  ||
seq2  CACAT-CCTC-ACCTAAGAAA-GCTATAGAGAAT-TTTTCATAAACCATA  46

seq1  TATTAACAGGAAAACCCCTGAAACCATTTTTTTTCTAACAGGACCAAGTT  100
      | | |||||| ||||||| |||||||  |||||| ||||| |||  | ||
seq2  T-TAAACAGG-AAACCCCGGAAACCA--TTTTTTATAACA-GACACAATT  91

seq1  TCCCACTCTTCACT-CTTATTTGATATATTTGTCAATGACTCAGCCAAAG  149
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TCCCACTCTTCACTCCTAATTTGATATATTTGTCAATGACTCAGCCAAAG  141

seq1  CAATAAGAAAGCAGTAAGAAAGAAATAGGAATATTAACGGGAAATAAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAAAGCAGTAAGAAAGAAATAGGAATATTAACGGGAAATAAAGC  191

seq1  AATCAATGAATTCGTATTTGATGATGTCTTCAGAGAGACTCCAGCTGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGAATTCGTATTTGATGATGTCTTCAGAGAGACTCCAGCTGAAA  241

seq1  ACTCCCAGAACCCTTAGACACTTTCAAAAAATTAGTAAGATTTAAGCAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGAACCCTTAGACACTTTCAAAAAATTAGTAAGATTTAAGCAAT  291

seq1  GCTGTGCAGAGAGACATGCCAAGTTTTGTACATGACAATCATGAGTTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAGAGAGACATGCCAAGTTTTGTACATGACAATCATGAGTTAAC  341

seq1  TTAGAAAACAATCTGGGGGAATGTCATATTTATAATGGTTTAAAATACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAACAATCTGGGGGAATGTCATATTTATAATGGTTTAAAATACAT  391

seq1  GAGTATTTTATAAACAAACCTTAGGAAAGGGAGACTACTATAGTGAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTATAAACAAACCTTAGGAAAGGGAGACTACTATAGTGAAAAT  441

seq1  CTTACAGTACTGAAGAAAGAGAGTGAAAGACACTAGAAGTTGGAGAGGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTACTGAAGAAAGAGAGTGAAAGACACTAGAAGTTGGAGAGGTC  491

seq1  TCATGTGCAGAAAGGGAAGCAGTCATCAAAGACAGAAGAGCATAAAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCAGAAAGGGAAGCAGTCATCAAAGACAGAAGAGCATAAAGGCT  541

seq1  GAAAAGTCATCAACACGTAAAATAAACCATTGGGTAAGCATTAAGTATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCATCAACACGTAAAATAAACCATTGGGTAAGCATTAAGTATCA  591

seq1  AAAATGATTCACTTGAATGGGCTAGCAAATTGAGCAGATACTTCTCAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTCACTTGAATGGGCTAGCAAATTGAGCAGATACTTCTCAAAG  641

seq1  ATAAAAACTATAAGGTCCAAAAGATTTTGAAAAGTTGTCAAAATTTTTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTATAAGGTCCAAAAGATTTTGAAAAGTTGTCAAAATTTTTAG  691

seq1  CCATTAGAGAAATTCAAAGTTAACCTGCTTTGAGATTCTGTTTCACCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGAGAAATTCAAAGTTAACCTGCTTTGAGATTCTGTTTCACCACA  741

seq1  GCCAGAATGCCTGTCACCAGGAAAACAATGGAGAACAGAGTGTGCCCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAATGCCTGTCACCAGGAAAACAATGGAGAACAGAGTGTGCCCAGG  791

seq1  ATGTTGAGAAAATGAAACTTTTATCACCATAGGAATGTAGTCTTACACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAGAAAATGAAACTTTTATCACCATAGGAATGTAGTCTTACACAA  841

seq1  CCACTATGAAAATCACCAAGGAGGTCCTTTACAAACTAGAAATAGAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGAAAATCACCAAGGAGGTCCTTTACAAACTAGAAATAGAACCA  891

seq1  TCTTATGACTTAGTTATATTATTCTTTGGCATATTCTCCAAGAAATTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGACTTAGTTATATTATTCTTTGGCATATTCTCCAAGAAATTTAA  941

seq1  GTTACTACTCAGAGACACTGATATGTCCATGATTATCATTGTAGTATTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTACTCAGAGACACTGATATGTCCATGATTATCATTGTAGTATTTG  991

seq1  TGTTCACAACATATCAGACATTGTACCAGCTTAGAAATA  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAACATATCAGACATTGTACCAGCTTAGAAATA  1030