BAC Information

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BAC

Clone NameB6Ng01-041C06
Chromosome9 (Build37)
Map Location 32,395,087 - 32,544,980
singlet/doubletdoublet
Overlap geneLOC669759, LOC100041398, Ets1
Upstream geneEG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1
Downstream geneLOC100041426, LOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041C06.bB6Ng01-041C06.g
ACCDH867889DH867890
length1,069530
definitionDH867889|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C06, 5' end.DH867890|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,395,087 - 32,396,165)(32,544,446 - 32,544,980)
sequence
gaattctgcctccacactcaaactcaagatgacgaggcacaacccctcca
ctaccacgagctgcatttcctcttcagctgagaacctgggcttgtcttga
actctctttcctccacggttgtgtaagtaagcctggctgagcttgatctg
caatacttgcctcgtcctgttagccctgcactgaggcttggcctcctgct
gtagtgcccctccagacagaaacagcctggacactcactgagaactccct
ctcagcagccagtgccctacaggcctcttgctggcttcttgtattttccc
agccgagtagctcagttcagctgatcgtgcatctcacagatggttgtgag
tctctggcgtctctgattcttttggattaccaacctgttctcagccccac
ctcccgctcccatgctccattcaacgggcagttgtctgaatggcattgtc
aatccttgattctgtgtgttcatctttctcaatagagcagtacactgttc
tacacgcctcacccaacttgtgcgcacgcgcacatcatggatttttgcac
atgaccaatgacttgaaccctgaagcccagctctgcaatgctaattgctg
cctttggtcccacactttaggaagcagagtaatgataaacggagtttttc
aactctattgacttttttttcacaactgattttctaaaagctgttgtgtt
attactgaaatgcttggtttcctagctcggctggcacccgactctttctc
ctcagctccctttcccgcttcttctcagttagacctttcttcatgccctt
ttctgtgttgattaaactttccccacttgcttccagcttccttctgcccc
gtcagttcaagggacttacgacgttactcattcccattttcggaaaagtg
agactctcagggtatctttcaattgtcccatcttttcttgcttcgttccc
attacttctgacataagccccaagtctttcagcaagtttccttgaagctg
ggcccccggatctcagaaacccccactttttccaaaaaaagggtctaaaa
cctttgtcttgtcctacca
aaactccatgggcaggagaagcagaaggggtggctgcagaatgaaggccc
agagcagggtcagaaacccttcacagggtgagttgcttaaagcattctga
acagaccacatgatcatgcacgttcattcatctccccaagctggttatac
acagccactgcagttgggcaagcattgctggagaagtctccactggtaaa
aatggcattaaaaggggggggggggggctaacatggaagctttaagaaaa
aataaatacactgaagaattacaagggaccccaggaacatttgttacggc
caatgaccagctgcttcccaggcagctcgcggcagaccgcaggaaatggg
atggccactcctacccaacgtacgctaggagatggagagaggtaagaaaa
gcctgtgcaggagtgccctcaagtcgcttctcgaccgtgcaaagctggct
aaaccctgaagaggaagagggtcttctccaaccacatcagcgagcttctt
tctggctgaggactggttaataaaactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32395087_32396165
seq2: B6Ng01-041C06.b_43_1111

seq1  GAATTCTGCCTCCACACTCAAACTCAAGATGACGAGGCACAACCCCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCCACACTCAAACTCAAGATGACGAGGCACAACCCCTCCA  50

seq1  CTACCACGAGCTGCATTTCCTCTTCAGCTGAGAACCTGGGCTTGTCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACGAGCTGCATTTCCTCTTCAGCTGAGAACCTGGGCTTGTCTTGA  100

seq1  ACTCTCTTTCCTCCACGGTTGTGTAAGTAAGCCTGGCTGAGCTTGATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTTCCTCCACGGTTGTGTAAGTAAGCCTGGCTGAGCTTGATCTG  150

seq1  CAATACTTGCCTCGTCCTGTTAGCCCTGCACTGAGGCTTGGCCTCCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTGCCTCGTCCTGTTAGCCCTGCACTGAGGCTTGGCCTCCTGCT  200

seq1  GTAGTGCCCCTCCAGACAGAAACAGCCTGGACACTCACTGAGAACTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCCCTCCAGACAGAAACAGCCTGGACACTCACTGAGAACTCCCT  250

seq1  CTCAGCAGCCAGTGCCCTACAGGCCTCTTGCTGGCTTCTTGTATTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCCAGTGCCCTACAGGCCTCTTGCTGGCTTCTTGTATTTTCCC  300

seq1  AGCCGAGTAGCTCAGTTCAGCTGATCGTGCATCTCACAGATGGTTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGTAGCTCAGTTCAGCTGATCGTGCATCTCACAGATGGTTGTGAG  350

seq1  TCTCTGGCGTCTCTGATTCTTTTGGATTACCAACCTGTTCTCAGCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCGTCTCTGATTCTTTTGGATTACCAACCTGTTCTCAGCCCCAC  400

seq1  CTCCCGCTCCCATGCTCCATTCAACGGGCAGTTGTCTGAATGGCATTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGCTCCCATGCTCCATTCAACGGGCAGTTGTCTGAATGGCATTGTC  450

seq1  AATCCTTGATTCTGTGTGTTCATCTTTCTCAATAGAGCAGTACACTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGATTCTGTGTGTTCATCTTTCTCAATAGAGCAGTACACTGTTC  500

seq1  TACACGCCTCACCCAACTTGTGCGCACGCGCACATCATGGATTTTTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCCTCACCCAACTTGTGCGCACGCGCACATCATGGATTTTTGCAC  550

seq1  ATGACCAATGACTTGAACCCTGAAGCCCAGCTCTGCAATGCTAATTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAATGACTTGAACCCTGAAGCCCAGCTCTGCAATGCTAATTGCTG  600

seq1  CCTTTGGTCCCACACTTTAGGAAGCAGAGTAATGATAAACGGAG-TTTTC  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTTTGGTCCCACACTTTAGGAAGCAGAGTAATGATAAACGGAGTTTTTC  650

seq1  AACTCTATTGACTTTTTTTTCACAACTGATTTTCT-AAAGCTGTTGTGTT  698
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACTCTATTGACTTTTTTTTCACAACTGATTTTCTAAAAGCTGTTGTGTT  700

seq1  ATTACTGAAATGCTTGGTTTCCTAGCTCGGCTGGCACCCGACTC-TTCTC  747
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTACTGAAATGCTTGGTTTCCTAGCTCGGCTGGCACCCGACTCTTTCTC  750

seq1  CTCAGCTCCCTTTCCCGCTTCTTCTCAGTTAGACCTTCTTCCATGCCCTT  797
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  CTCAGCTCCCTTTCCCGCTTCTTCTCAGTTAGACCTTTCTTCATGCCCTT  800

seq1  TTCTGTGTTGATTAAACTTCCCCCACTTGCTTCCAGCTTCCTTCTGCCCC  847
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTGTGTTGATTAAACTTTCCCCACTTGCTTCCAGCTTCCTTCTGCCCC  850

seq1  GTCAGTCCAA-GGACTTACGACGTTACTCATTCCCATTTTCGGAAAAGTG  896
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCAAGGGACTTACGACGTTACTCATTCCCATTTTCGGAAAAGTG  900

seq1  AGACTCTCAGGGTTATCTTTCAATTGTCTCCATCTTTTCTTGCTTCGTTC  946
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  AGACTCTCAGGG-TATCTTTCAATTGTC-CCATCTTTTCTTGCTTCGTTC  948

seq1  CCATTTAGCTTCTGACAGTAGAGCCCCAAGTCTTTCCAGCAAGTTTCTTT  996
      |||||   ||||||||| || |||||||||||||| ||||||||||| ||
seq2  CCATT--ACTTCTGACA-TA-AGCCCCAAGTCTTT-CAGCAAGTTTCCTT  993

seq1  GAGGCTGGGCCCCCCAGGATCACAGAGACCCCCACTTTTTCCCAGAAAAA  1046
      || |||||||||||  ||||| |||| |||||||||||||||   |||||
seq2  GAAGCTGGGCCCCC--GGATCTCAGAAACCCCCACTTTTTCC---AAAAA  1038

seq1  AAGGCTCTCAGAAGCTTTGTCTTTGCTCTACCA  1079
      |||| ||| | || ||||||| |||  ||||||
seq2  AAGGGTCT-AAAACCTTTGTC-TTGTCCTACCA  1069

seq1: chr9_32544446_32544980
seq2: B6Ng01-041C06.g_68_603 (reverse)

seq1  CATTGTTTTCTTAACCAGTCCTCAGCCAGAAAGAAGCTCGCTGATGTGGT  50
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTATTAACCAGTCCTCAGCCAGAAAGAAGCTCGCTGATGTGGT  50

seq1  TGGAGAAGACCCTCTTCCTCTTCAGGGTTTAGCCAGCTTCGCACGGTCGA  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGAGAAGACCCTCTTCCTCTTCAGGGTTTAGCCAGCTTTGCACGGTCGA  100

seq1  GAAGCGACTTGAGGGCACTCCTGCACAGGCTTTTCTTACCTCTCTCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGACTTGAGGGCACTCCTGCACAGGCTTTTCTTACCTCTCTCCATC  150

seq1  TCCTAGCGTACGTTGGGTAGGAGTGGCCATCCCATCTCCTGCGGTCTGCC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCTAGCGTACGTTGGGTAGGAGTGGCCATCCCATTTCCTGCGGTCTGCC  200

seq1  GCGAGCTGCCTGGGAAGCAGCTGGTCATTGGCCGTAACAAATGTTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTGCCTGGGAAGCAGCTGGTCATTGGCCGTAACAAATGTTCCTGG  250

seq1  GGTCCCTTGTAATTCTTCAGTGTATTTATTTTCTCTTAAAGCTTCCATGT  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTCCCTTGTAATTCTTCAGTGTATTTATTTTTTCTTAAAGCTTCCATGT  300

seq1  TAG-CCCCCCCCCCCCCTTTTAATGCCATTTTTACCAGTGGAGACTTCTC  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCCCCCCCCCCCTTTTAATGCCATTTTTACCAGTGGAGACTTCTC  350

seq1  CAGCAATGCTTGCCCAACTGCAGTGGCTGTGTATAACCAGCTTGGGGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGCTTGCCCAACTGCAGTGGCTGTGTATAACCAGCTTGGGGAGA  400

seq1  TGAATGAACGTGCATGATCATGTGGTCTGTTCAGAATGCTTTAAGCAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAACGTGCATGATCATGTGGTCTGTTCAGAATGCTTTAAGCAACT  450

seq1  CACCCTGTGAAGGGTTTCTGACCCTGCTCTGGGCCTTCATTCTGCAGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTGAAGGGTTTCTGACCCTGCTCTGGGCCTTCATTCTGCAGCCA  500

seq1  CCCCTTCTGCTTCTCCTGCCCATGGAGTTTGAATTC  535
      ||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTGCTTCTCCTGCCCATGGAGTTTGAATTC  536