BAC Information

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BAC

Clone NameB6Ng01-041F18
Chromosome9 (Build37)
Map Location 116,564,506 - 116,565,601
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F18.bB6Ng01-041F18.g
ACCDH868045DH868046
length1,093828
definitionDH868045|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F18, 5' end.DH868046|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccaatttcttctctagctccactttctgactgtggatacggtca
ccgcatgcctcatgcttccatcatcctgacttttctgccctgaagaactc
ttccctccaactgtgggcccaaaataaactcctcctttaataatttactt
ttgtcagggtattttgtcatagccattcaagtaattaacatctctacaaa
ttcctatacatacacacacacacatatgtgtgcatgcacatatacacaga
gacacacattgacacacatacaaatggacacgtatacacagaaacacact
tacacagatagacacacagaaacgcacaccccctttcctttctcagtcag
ggctcattgataaatctcagagttctacttatctttcctcaacagaattc
aggttgttgggagatattaagacaactcttgatctctgaattgggcctct
cccccccgagaagaaaaggggggtcaaaagcaggccatcgatgcaccgct
ctgagaacaaccacagattgttccagccctaagtcagcgccggatgtcct
gaccataagatgtaccctgataccaccaagttcctgcttccccatgtagt
cgccaaaagaaaaatttccgctgccccattcctcctgttgagaagtactt
ccccttttgcttgtgcatttaaaccttgggcctggctaatacattggggt
cctgatgcaattcagaacatttccgtgtcgttattcgcacaagaccctcg
tctctctctaccccccattttggttcttaggagaaggtcccctcgagacc
ctcgaataactggacgtgctgggacgggtcgtcaggtgaaatttaatttc
acattctttaatgtatactacagtgaccatttcttccttacgcagcgcag
gtttagtaaggagaggaactgcgtgtgccttaccctcttcctaatcctta
ctgaggagagctggtatgagaggtaatggctgggacctccaggtcctctt
gtttaataaaaagacaccagaaaggaacatctgggatctcttcaggacag
ctcagtctccggatggaagactggacatcaaggagggtaaata

gaattcttaagactcaagtggtttttcaaatgtccttgtgggtgagtaga
atggccgagcagataaagggtcttgactagcaagcctgatgacgtgattt
aggcgtgagaaccccacgtgaaggtaggaggagagaactggttcatgggg
ctgttctgtggcctccacgcttgccccacggatgtggccacatgctagtc
tgatggcagctactctttagttgagattcctatcttcccaagtgtctcaa
atttacaaccaagaggagctatcatggttggcttggtgacttggaggaga
acactgttgcggagactcaccaagctccatatgatccatcctggcaatct
gtgaagtcagaagtatgttcatgataacactaatgaattatcactcgctc
actctgatgttctctcccgtggagagtggcctgccccataggctactgag
tttctgttactgtggagcatggaacccagaaagccatgtgagaagccagc
tggcctccagcagctagtctggaaattatagagatttgttgctgatgacg
agatttttattgattaaagaagaggtttgctctgttgcccaggcagacct
cagatttccatctttttgcttctgcctcccaaataccattattttaggta
tgagctgttaggatattttctaaagttttaatataagaatcctttacatt
attttgttgttgaagtaacttatttatttttttactgggtatttttattt
attttacatttcaattgttattccccttcccccttttcccctcagcaaat
cccctatccctccctaatacccttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116564506_116565601
seq2: B6Ng01-041F18.b_43_1135

seq1  GAATTCCCAATTTCTTCTCTAGCTCCACTTTCTGACTGTGGATACGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATTTCTTCTCTAGCTCCACTTTCTGACTGTGGATACGGTCA  50

seq1  CCGCATGCCTCATGCTTCCATCATCCTGACTTTTCTGCCCTGAAGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATGCCTCATGCTTCCATCATCCTGACTTTTCTGCCCTGAAGAACTC  100

seq1  TTCCCTCCAACTGTGGGCCCAAAATAAACTCCTCCTTTAATAATTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCAACTGTGGGCCCAAAATAAACTCCTCCTTTAATAATTTACTT  150

seq1  TTGTCAGGGTATTTTGTCATAGCCATTCAAGTAATTAACATCTCTACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGGTATTTTGTCATAGCCATTCAAGTAATTAACATCTCTACAAA  200

seq1  TTCCTATACATACACACACACACATATGTGTGCATGCACATATACACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATACATACACACACACACATATGTGTGCATGCACATATACACAGA  250

seq1  GACACACATTGACACACATACAAATGGACACGTATACACAGAAACACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACATTGACACACATACAAATGGACACGTATACACAGAAACACACT  300

seq1  TACACAGATAGACACACAGAAACGCACACCCCCTTTCCTTTCTCAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGATAGACACACAGAAACGCACACCCCCTTTCCTTTCTCAGTCAG  350

seq1  GGCTCATTGATAAATCTCAGAGTTCTACTTATCTTTCCTCAACAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTGATAAATCTCAGAGTTCTACTTATCTTTCCTCAACAGAATTC  400

seq1  AGGTTGTTGGGAGATATTAAGACAACTCTTGATCTCTGAATTGGGCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTGGGAGATATTAAGACAACTCTTGATCTCTGAATTGGGCCTCT  450

seq1  CCCCCCCGAGAAGAAAAGGGGGGTCAAAAGCAGGCCATCGATGCACCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGAGAAGAAAAGGGGGGTCAAAAGCAGGCCATCGATGCACCGCT  500

seq1  CTGAGAACAACCACAGATTGTTCCAGCCCTAAGTCAGCGCCGGATGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACAACCACAGATTGTTCCAGCCCTAAGTCAGCGCCGGATGTCCT  550

seq1  GACCATAAGATGTACCCTGATACCACCAAGTTCCTGCTTCCCCATGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAAGATGTACCCTGATACCACCAAGTTCCTGCTTCCCCATGTAGT  600

seq1  CGCCAAAAGAAAAATTTCCGCTGCCCCATTCCTCCTGTTGAGAAGTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAAAGAAAAATTTCCGCTGCCCCATTCCTCCTGTTGAGAAGTACTT  650

seq1  CCCCTTTTGCTTGTGCATTTAAACCTTGGGCCTGGCTAATACATTGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTGCTTGTGCATTTAAACCTTGGGCCTGGCTAATACATTGGGGT  700

seq1  CCTGATGCAATTCAGAACATTTCCGTGTCGTTATTCGCACAAGACCCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCAATTCAGAACATTTCCGTGTCGTTATTCGCACAAGACCCTCG  750

seq1  TCTCTCTCTACCCCCCATTTTGGTTCTTAGGAGAAGGTCCCCTCGAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTACCCCCCATTTTGGTTCTTAGGAGAAGGTCCCCTCGAGACC  800

seq1  CTCGAATAACTGGACGTGCT-GGACGGGTCGTCAGGTGAAATTTAATTTC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCGAATAACTGGACGTGCTGGGACGGGTCGTCAGGTGAAATTTAATTTC  850

seq1  ACATTCTTTAATGTATACTACAGTGACCATTTCTTCCTTACGCAGCGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTAATGTATACTACAGTGACCATTTCTTCCTTACGCAGCGCAG  900

seq1  GTTTAGTAAGGAGAGGAACTGCGTGTGCCTTACCCTCTTCCTAATCCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTTAGTAAGGAGAGGAACTGCGTGTGCCTTACCCTCTTCCTAAT-CCTT  949

seq1  ACTGAGGAAGAGCTGGTATGAGAGGTAATGGCTGGGACCTCCCAGGTCCT  999
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGAGG-AGAGCTGGTATGAGAGGTAATGGCTGGGACCT-CCAGGTCCT  997

seq1  C-TGTTTAATTAAAAAAGACCACCAGAAAGGAAACATCTGGGATCTC-TC  1047
      | ||||||||  ||||||| ||||||||||| ||||||||||||||| ||
seq2  CTTGTTTAAT--AAAAAGA-CACCAGAAAGG-AACATCTGGGATCTCTTC  1043

seq1  AGGACAGCTCAGTCTCCGGAATGAAGACT-GACATCAAGGAGGGTAAATA  1096
      ||||||||||||||||||||  ||||||| ||||||||||||||||||||
seq2  AGGACAGCTCAGTCTCCGGATGGAAGACTGGACATCAAGGAGGGTAAATA  1093


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