BAC Information

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BAC

Clone NameB6Ng01-041I22
Chromosome9 (Build37)
Map Location 65,783,562 - 65,784,133
singlet/doubletsinglet
Overlap geneCsnk1g1
Upstream geneSlc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik
Downstream genePpib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I22.g
ACCDH868185
length777
definitionDH868185|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctcagtttggtttctgcttttccattttcaggtattgatacgt
tttcttccctcccactgtttatttttctttcctttcgttaagggattcat
gtatcatttcctgaaattgcttgtgttttcctaaaaatctagcagggatt
tgttaatttacacttttgacctctatcctcgtggattgtgagttttaagc
ttttttcgagaccctgtgaaggtgaataatattcagggactgctgctgaa
taatacgcacgtgcgggtggtgacgtaaccctgactggatcctattatgt
tcttacactggcaaagcattaaaatggtccggggaagatgatttagctag
gaaccaatgtctgagtatttctttgttggatgatgttttttccccttcat
aactaatttggccatggtgccatggtcattgtggacatgacccaaagcat
tttgtccatctttttaatttattttatgtctgtgatattttccacatcac
ctggacttctgccatctctttctacccagtctttatcctctcattttctt
tgctgcctccttcgcttacccattctgtatagtagactttaagcatccag
atagcttccactagactgtcatgggtggactaaagctaatgattctttgt
agcattgagaaatgaggtcattttaatgaccatatcaaagatatttctta
agatgagcatggtagtgaagttgtaattccagcttctttgggagattgaa
caagaagattccttgaaagcaggagtt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65783562_65784133
seq2: B6Ng01-041I22.g_274_843

seq1  GAGACCCTGTGAAGGTGAATTAAGCATAGGGACTGTGACTGAGTGAGACA  50
      |||||||||||||||||||| |     ||||||||   |||| | | || 
seq2  GAGACCCTGTGAAGGTGAATAATATTCAGGGACTGCTGCTGAATAATACG  50

seq1  CGCCTGTGTAGCGTATGGGAAGCCCTGA-AGGATCCTCAGTGCTAAACAT  99
      | | || |    ||   | || ||||||  |||||||   |  |   | |
seq2  CACGTGCGGGTGGTGACGTAA-CCCTGACTGGATCCT--ATTATGTTCTT  97

seq1  AAAC-AGCTAAGCATTAAAATAAGCCTTAGAAATTGTTTTTGTTTGTAAG  148
      | ||  || ||||||||||||   ||   |||  || ||| | | | || 
seq2  ACACTGGCAAAGCATTAAAATGGTCCGGGGAAGATGATTTAGCTAGGAAC  147

seq1  CAATGTGTAAGTATTT-ATTGGAAAATAATGAACATTAAACAGATCATAA  197
      |||||| | |||||||  |||    || |||    ||   |   ||||||
seq2  CAATGTCTGAGTATTTCTTTGTTGGATGATG--TTTTTTCCCCTTCATAA  195

seq1  CTACATTGGCCATAATGCCATAAGCATAATTAATATGCCCAAAAGCATTT  247
      |||  ||||||||  ||||||   |||  |  | ||| || |||||||||
seq2  CTAATTTGGCCATGGTGCCATGGTCATTGTGGACATGACCCAAAGCATTT  245

seq1  TGTTTATATTTTTAATTTATTTTATGTCTGTGATATTTTCCACATCTCCT  297
      |||  || |||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCCATCTTTTTAATTTATTTTATGTCTGTGATATTTTCCACATCACCT  295

seq1  TTTCTTTTCCCATCTCTTTCTACCCAGTCTTTATCCTCTCATTTTCTTTG  347
         ||| | |||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTGCCATCTCTTTCTACCCAGTCTTTATCCTCTCATTTTCTTTG  345

seq1  CTGCCTCCTTCTCTTACCCATTCTGTATAGTAGACTTTAAGCATCCAGAT  397
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTTCGCTTACCCATTCTGTATAGTAGACTTTAAGCATCCAGAT  395

seq1  AGCTTCCACTAGACTGTCATGGGTGGACTAAAGCTAATGATTCTTTGTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCACTAGACTGTCATGGGTGGACTAAAGCTAATGATTCTTTGTAG  445

seq1  CATTGAGAAATGAGGTCATTTTAATGACCATATCAAAGATATTTCTTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAAATGAGGTCATTTTAATGACCATATCAAAGATATTTCTTAAG  495

seq1  ATGAGCATGGTAGTGAAGTTGTAATTCCAGCTTC-TTGGGAGATTGAAGC  546
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  ATGAGCATGGTAGTGAAGTTGTAATTCCAGCTTCTTTGGGAGATTGAA-C  544

seq1  AAGAAGATTCCTTGAAAGCAGGAGTT  572
      ||||||||||||||||||||||||||
seq2  AAGAAGATTCCTTGAAAGCAGGAGTT  570