BAC Information

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BAC

Clone NameB6Ng01-041J20
Chromosome9 (Build37)
Map Location 83,054,653 - 83,208,859
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039085, Irak1bp1, Phip, LOC100039144, Hmgn3
Downstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J20.bB6Ng01-041J20.g
ACCDH868228DH868229
length1,097221
definitionDH868228|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J20, 5' end.DH868229|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,054,653 - 83,055,774)(83,208,639 - 83,208,859)
sequence
gaattccagaatcctggaggacagtcagcttcattgcagcctatgtgttc
aagaagattgaagcatcaaactcttaaataattgtgactcagaaaagggg
agctggttttcttcctagcattaaacagtgacacactggttccaccacca
atggggtagtctgctttctcattgtcccatcaagctcatcgtcattgcct
tctgaactggggcctgaatgttgtatccatctttctcttgtataagcggg
tttggggcagcagaaagggtagaagagaaagaaatgcattctctcatcat
ggaaacatccagaagctgcccttacaaattgcacttccattccatcaaag
gaaactaaataatggagttcctacttgtgaagaagaggaaactgatattg
caatacaagtagctgtggttggcagaacaatcatctacacatgtcctagg
ttgcagggcattcatgtagaaaagaagggctatacacttgtggttaaggt
aatgatctaagatgaggaattagtctgcattatgcaagtgagtccaatct
aatattcttagattcaatctaaattcttagaattaatctaaaatcttata
agtcaatgatagagtatttgcctagcataccaaagtcactcaaccttcct
agtgttgtgacactttaacacctcttgtggtgaccctaatcataaaatta
ttttgttgttacttcataactgttattttgctaccgtgatgaatcataat
gtaagcatttgatatgaaggatatgagatcgcataggggttgaaacccac
aagttgagaattgttgctatagtttctatccttcggggttggaggcaggg
aagagaccgagaggggggatgctgacttacccagctgtgatcagaatgga
gatatgactttccggggaggcctgaaagattcaatgtgagactcaaccca
ctgatgtagaatgagacatgactaggactaggcacattagagaccaaaga
gggagaaacttttttctttggaattcagaaggacttagtttaacaatagg
ccaattagaccacactgacttctgacaacggactcaagacaatcact
cactcaaaacaatagagggcagacagttttgatgatgctataaaatcctc
agctggctgatgacagggacgaattttagtatcaacaaggaaattgaaat
gtctgcaaattcattatcacaaggtgtattaggggctaagaccggttgta
gaaggtttatctgccattcagaaggctctggattttatgcccatggaggg
ggagaggggaagagagagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83054653_83055774
seq2: B6Ng01-041J20.b_47_1143

seq1  GAATTCCAGAATCCTGGAGGACAGTCAGCTTCATTGCAGCCTATGTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATCCTGGAGGACAGTCAGCTTCATTGCAGCCTATGTGTTC  50

seq1  AAGAAGATTGAAGCATCAAACTCTTAAATAATTGTGACTCAGAAAAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATTGAAGCATCAAACTCTTAAATAATTGTGACTCAGAAAAGGGG  100

seq1  AGCTGGTTTTCTTCCTAGCATTAAACAGTGACACACTGGTTCCACCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTTTCTTCCTAGCATTAAACAGTGACACACTGGTTCCACCACCA  150

seq1  ATGGGGTAGTCTGCTTTCTCATTGTCCCATCAAGCTCATCGTCATTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTAGTCTGCTTTCTCATTGTCCCATCAAGCTCATCGTCATTGCCT  200

seq1  TCTGAACTGGGGCCTGAATGTTGTATCCATCTTTCTCTTGTATAAGCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGGGGCCTGAATGTTGTATCCATCTTTCTCTTGTATAAGCGGG  250

seq1  TTTGGGGCAGCAGAAAGGGTAGAAGAGAAAGAAATGCATTCTCTCATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCAGCAGAAAGGGTAGAAGAGAAAGAAATGCATTCTCTCATCAT  300

seq1  GGAAACATCCAGAAGCTGCCCTTACAAATTGCACTTCCATTCCATCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATCCAGAAGCTGCCCTTACAAATTGCACTTCCATTCCATCAAAG  350

seq1  GAAACTAAATAATGGAGTTCCTACTTGTGAAGAAGAGGAAACTGATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAATAATGGAGTTCCTACTTGTGAAGAAGAGGAAACTGATATTG  400

seq1  CAATACAAGTAGCTGTGGTTGGCAGAACAATCATCTACACATGTCCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGTAGCTGTGGTTGGCAGAACAATCATCTACACATGTCCTAGG  450

seq1  TTGCAGGGCATTCATGTAGAAAAGAAGGGCTATACACTTGTGGTTAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGCATTCATGTAGAAAAGAAGGGCTATACACTTGTGGTTAAGGT  500

seq1  AATGATCTAAGATGAGGAATTAGTCTGCATTATGCAAGTGAGTCCAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTAAGATGAGGAATTAGTCTGCATTATGCAAGTGAGTCCAATCT  550

seq1  AATATTCTTAGATTCAATCTAAATTCTTAGAATTAATCTAAAATCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTAGATTCAATCTAAATTCTTAGAATTAATCTAAAATCTTATA  600

seq1  AGTCAATGATAGAGTATTTGCCTAGCATACCAAAGTCACTCAACCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGATAGAGTATTTGCCTAGCATACCAAAGTCACTCAACCTTCCT  650

seq1  AGTGTTGTGACACTTTAACACCTCTTGTGGTGACCCTAATCATAAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTGACACTTTAACACCTCTTGTGGTGACCCTAATCATAAAATTA  700

seq1  TTTTGTTGTTACTTCATAACTGTTATTTTGCTACCGTGATGAATCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTACTTCATAACTGTTATTTTGCTACCGTGATGAATCATAAT  750

seq1  GTAAGCATTTGATATGAAGGATATGAGATCGCATAGGGGTTGAAACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATTTGATATGAAGGATATGAGATCGCATAGGGGTTGAAACCCAC  800

seq1  AAGTTGAGAATTGTTGCTATAGTTTCTATCCTTCGGGGTTGGAGGCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGAATTGTTGCTATAGTTTCTATCCTTCGGGGTTGGAGGCAGGG  850

seq1  AAGAGACCGAGAGGGGGGATGCTGACTTACCCAGCTGTGATCAGAATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCGAGAGGGGGGATGCTGACTTACCCAGCTGTGATCAGAATGGA  900

seq1  GATAATGACTTCCAGGGGAGGCCCTGAAAGATTCAATGTGAGAACTCAAC  950
      ||| ||||||| | ||||||| |||||||||||||||||||| |||||||
seq2  GAT-ATGACTTTCCGGGGAGG-CCTGAAAGATTCAATGTGAG-ACTCAAC  947

seq1  CCACTGATGTAGAAATGAGACCATGAACCTAGGAACATAGGCAACATTTA  1000
      |||||||||||| ||||||| |||||  ||||||   ||||| ||| |||
seq2  CCACTGATGTAG-AATGAGA-CATGA--CTAGGA--CTAGGC-ACA-TTA  989

seq1  GAGACCAAAAGAGGGAAGAAAACATTTTTCTCTGGAATTTCCAGAAAGGA  1050
      |||||| |||||||||   |||| ||||||| |||||||  ||| |||||
seq2  GAGACC-AAAGAGGGA--GAAACTTTTTTCTTTGGAATT--CAG-AAGGA  1033

seq1  CATTAGTTTAACCAATAGCCCAAATAGAACCACACTGAACTTCTGACCAA  1100
      | ||||||||| |||||| |||| ||| ||||||||| |||||||| |||
seq2  C-TTAGTTTAA-CAATAGGCCAATTAG-ACCACACTG-ACTTCTGA-CAA  1078

seq1  CAGACTTCAAAGACAATTCACT  1122
      | ||||   ||||||| |||||
seq2  CGGACT--CAAGACAA-TCACT  1097

seq1: chr9_83208639_83208859
seq2: B6Ng01-041J20.g_74_294 (reverse)

seq1  CCCCTCTCTCTTCCCCTCTCCCCCTCCATGGGCATAAAATCCAGAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCTTCCCCTCTCCCCCTCCATGGGCATAAAATCCAGAGCCTT  50

seq1  CTGAATGGCAGATAAACCTTCTACAACCGGTCTTAGCCCCTAATACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGCAGATAAACCTTCTACAACCGGTCTTAGCCCCTAATACACCT  100

seq1  TGTGATAATGAATTTGCAGACATTTCAATTTCCTTGTTGATACTAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAATGAATTTGCAGACATTTCAATTTCCTTGTTGATACTAAAATT  150

seq1  CGTCCCTGTCATCAGCCAGCTGAGGATTTTATAGCATCATCAAAACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCTGTCATCAGCCAGCTGAGGATTTTATAGCATCATCAAAACTGTC  200

seq1  TGCCCTCTATTGTTTTGAGTG  221
      |||||||||||||||||||||
seq2  TGCCCTCTATTGTTTTGAGTG  221