BAC Information

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BAC

Clone NameB6Ng01-041L20
Chromosome9 (Build37)
Map Location 68,231,961 - 68,386,092
singlet/doubletdoublet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041L20.bB6Ng01-041L20.g
ACCDH868314DH868315
length9511,026
definitionDH868314|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L20, 5' end.DH868315|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,385,471 - 68,386,092)(68,231,961 - 68,232,992)
sequence
gaattctcatggtgtctggagccattttagagtggatcttataggtctct
aaacctgatttagttggtgccactaactgaatatacaattgacacatata
gatgctaataaacttggagaatcttaagatccattctgacagggatggcc
aagtggaagctactaaagttgtccccacctactaaagcaatatctcattt
cttataggctaacagaaatgagtgacagcctcgagggacttggaagatgt
agggcaagctgattcccatcacatcacatctgataatgctgaagacacat
agatcctgaggatgaccaacagttaccagaaacctaatcagtggaaggac
agcttttcccatggacactggtgagttttccccttagcctcatctatctt
cacataatagacttgcaagcaaaagagcaatggtgacatgggtagagatg
acacgtgggcttcatgactttctgttcacaaagtgcaatctagttcctct
attacaagtgtctcacgtgcccacaagtcatcaaactcctgatagagcat
cattcccagaggaatcagcagtcaactggtggcaggagatttacattaga
ccacttatactataggagaagcaaagctgtaatccttttggagtaaacaa
ttgttctgaaaacagagttgccttccctacctgcaatatttctgctagag
ttatcatccagcaacttatgtatgccatgttccccatcagaatatttagc
acaatgtagcatcaatcgaaggacctcattctacagggaatgcagtccgg
tcctaggctcattctcatggtctgaccatgccctccagatactactccag
tcactggcctggtataccctaaatcaacagcaaataaacagagctgtttc
tctcacagacagtgggctgtaggagctgtgggagggttagaatagtaaag
g
gaattcttagatatgtctgatgttctacaagacattcggaattcaaatat
gcagacaactggcctctgaagcttacagactaatgagggaccttggtgaa
tgagctatggtgtggtaaatgctatctatcacagagaatgtgtaaagaat
agaccagagagaggccagtctgcctgtgggagttggagagctgttcccag
agaagattatctttctgtctgtcgagtcttaaagaaggaaagagaaaaga
ctggatttagcattataatatggtgttcaaggaagagaacagtgtttaaa
atcagctaatctctctttctttctgtctctctgtctgcctctgtctcttt
gtctgtctctctctgctcatggaggcttaacattgatatcaggtatccaa
ttagctttctcaatcactctccaacttattttttttttagaagcagaaac
atctctgtctgagcttggagctttctcatttggctaggctgactggctag
cgattcccttgattctcttgtctctgtcttcacagcaatgggctatgtgc
accatcacaccaagcttttgcaaggttgctggggctcaaacttagctcct
catgcttacaggctatcttccttgccctgagaagcaattaatcttaaaac
acaagaataagtttgaggaatggtttatctgatttaagaaaataagtgag
ttcatatttagaactgaaagaaaaatcaaactgaaaaagtagatgggggc
atatatcagaattggtcaattttctctatagagatagtatttctggcctt
tgggagattctgaaagcaatcagagacagtacctaaattaatgggtgtgc
ttgtatccaatagaattttactgacaaaagaagtaagtgggccagatctg
acccacatgcatagtttgccaacaccttgcctagatatgacgggtcatta
atgttgaggttctactcaaggagtctcaagcatggcacagtaaatttggt
gttctaggaactatactgtgtgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68385471_68386092
seq2: B6Ng01-041L20.b_44_665 (reverse)

seq1  GCTTCTCCTATAGTATAAGTGGTCTAATGTAAATCTCCTGCCACCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTATAGTATAAGTGGTCTAATGTAAATCTCCTGCCACCAGTTG  50

seq1  ACTGCTGATTCCTCTGGGAATGATGCTCTATCAGGAGTTTGATGACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGATTCCTCTGGGAATGATGCTCTATCAGGAGTTTGATGACTTGT  100

seq1  GGGCACGTGAGACACTTGTAATAGAGGAACTAGATTGCACTTTGTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGTGAGACACTTGTAATAGAGGAACTAGATTGCACTTTGTGAACA  150

seq1  GAAAGTCATGAAGCCCACGTGTCATCTCTACCCATGTCACCATTGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCATGAAGCCCACGTGTCATCTCTACCCATGTCACCATTGCTCTT  200

seq1  TTGCTTGCAAGTCTATTATGTGAAGATAGATGAGGCTAAGGGGAAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCAAGTCTATTATGTGAAGATAGATGAGGCTAAGGGGAAAACTC  250

seq1  ACCAGTGTCCATGGGAAAAGCTGTCCTTCCACTGATTAGGTTTCTGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTCCATGGGAAAAGCTGTCCTTCCACTGATTAGGTTTCTGGTAA  300

seq1  CTGTTGGTCATCCTCAGGATCTATGTGTCTTCAGCATTATCAGATGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTCATCCTCAGGATCTATGTGTCTTCAGCATTATCAGATGTGAT  350

seq1  GTGATGGGAATCAGCTTGCCCTACATCTTCCAAGTCCCTCGAGGCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGAATCAGCTTGCCCTACATCTTCCAAGTCCCTCGAGGCTGTCA  400

seq1  CTCATTTCTGTTAGCCTATAAGAAATGAGATATTGCTTTAGTAGGTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTGTTAGCCTATAAGAAATGAGATATTGCTTTAGTAGGTGGGG  450

seq1  ACAACTTTAGTAGCTTCCACTTGGCCATCCCTGTCAGAATGGATCTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTAGTAGCTTCCACTTGGCCATCCCTGTCAGAATGGATCTTAAG  500

seq1  ATTCTCCAAGTTTATTAGCATCTATATGTGTCAATTGTATATTCAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAAGTTTATTAGCATCTATATGTGTCAATTGTATATTCAGTTAG  550

seq1  TGGCACCAACTAAATCAGGTTTAGAGACCTATAAGATCCACTCTAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCAACTAAATCAGGTTTAGAGACCTATAAGATCCACTCTAAAATG  600

seq1  GCTCCAGACACCATGAGAATTC  622
      ||||||||||||||||||||||
seq2  GCTCCAGACACCATGAGAATTC  622

seq1: chr9_68231961_68232992
seq2: B6Ng01-041L20.g_69_1094

seq1  GAATTCTTAGATATGTCTGATGTTCTACAAGACATTCGGAATTCAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATATGTCTGATGTTCTACAAGACATTCGGAATTCAAATAT  50

seq1  GCAGACAACTGGCCTCTGAAGCTTACAGACTAATGAGGGACCTTGGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAACTGGCCTCTGAAGCTTACAGACTAATGAGGGACCTTGGTGAA  100

seq1  TGAGCTATGGTGTGGTAAATGCTATCTATCACAGAGAATGTGTAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATGGTGTGGTAAATGCTATCTATCACAGAGAATGTGTAAAGAAT  150

seq1  AGACCAGAGAGAGGCCAGTCTGCCTGTGGGAGTTGGAGAGCTGTTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAGAGAGGCCAGTCTGCCTGTGGGAGTTGGAGAGCTGTTCCCAG  200

seq1  AGAAGATTATCTTTCTGTCTGTCGAGTCTTAAAGAAGGAAAGAGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTATCTTTCTGTCTGTCGAGTCTTAAAGAAGGAAAGAGAAAAGA  250

seq1  CTGGATTTAGCATTATAATATGGTGTTCAAGGAAGAGAACAGTGTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTAGCATTATAATATGGTGTTCAAGGAAGAGAACAGTGTTTAAA  300

seq1  ATCAGCTAATCTCTCTTTCTTTCTGTCTCTCTGTCTGCCTCTGTCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAATCTCTCTTTCTTTCTGTCTCTCTGTCTGCCTCTGTCTCTTT  350

seq1  GTCTGTCTCTCTCTGCTCATGGAGGCTTAACATTGATATCAGGTATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTCTCTCTGCTCATGGAGGCTTAACATTGATATCAGGTATCCAA  400

seq1  TTAGCTTTCTCAATCACTCTCCAACTTATTTTTTTTTTAGAAGCAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTCTCAATCACTCTCCAACTTATTTTTTTTTTAGAAGCAGAAAC  450

seq1  ATCTCTGTCTGAGCTTGGAGCTTTCTCATTTGGCTAGGCTGACTGGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTCTGAGCTTGGAGCTTTCTCATTTGGCTAGGCTGACTGGCTAG  500

seq1  CGATTCCCTTGATTCTCTTGTCTCTGTCTTCACAGCAATGGGCTATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCCCTTGATTCTCTTGTCTCTGTCTTCACAGCAATGGGCTATGTGC  550

seq1  ACCATCACACCAAGCTTTTGCAAGGTTGCTGGGGCTCAAACTTAGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACACCAAGCTTTTGCAAGGTTGCTGGGGCTCAAACTTAGCTCCT  600

seq1  CATGCTTACAGGCTATCTTCCTTGCCCTGAGAAGCAATTAATCTTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTACAGGCTATCTTCCTTGCCCTGAGAAGCAATTAATCTTAAAAC  650

seq1  ACAAGAATAAGTTTGAGGAATGGTTTATCTGATTTAAGAAAATAAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATAAGTTTGAGGAATGGTTTATCTGATTTAAGAAAATAAGTGAG  700

seq1  TTCATATTTAGAACTGAAAGAAAAATCAAACTGAAAAAGTAGATGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTAGAACTGAAAGAAAAATCAAACTGAAAAAGTAGATGGGGGC  750

seq1  ATATATCAGAATTGGTCAATTTTCTCTATAGAGATAGTATTTCTGGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAGAATTGGTCAATTTTCTCTATAGAGATAGTATTTCTGGCCTT  800

seq1  TGGGAGATTCTGAAAGCAATCAGAGACAGTACCTAAATTAATGGGTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATTCTGAAAGCAATCAGAGACAGTACCTAAATTAATGGGTGTGC  850

seq1  TTGTATTCCAATAGAATTTTACTGACAAAAGAAGTAAGTGGGCCAGATCT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTA-TCCAATAGAATTTTACTGACAAAAGAAGTAAGTGGGCCAGATCT  899

seq1  GACCCACATTGCATAGTTTGCCAACACCTTGCCTAGAATATGACGGGTCA  950
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GACCCACA-TGCATAGTTTGCCAACACCTTGCCTAG-ATATGACGGGTCA  947

seq1  TTAATGTTGAGGTTCTAACTCAAGGGAGTCTTCAAGCATGGCACAGTAAA  1000
      |||||||||||||||| |||||| |||||| |||||||||||||||||||
seq2  TTAATGTTGAGGTTCT-ACTCAA-GGAGTC-TCAAGCATGGCACAGTAAA  994

seq1  TTT-GTGTTCTAGGAACTATACTGTTGTGTTGT  1032
      ||| |||||||||||||||||||| ||||| ||
seq2  TTTGGTGTTCTAGGAACTATACTG-TGTGTGGT  1026