BAC Information

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BAC

Clone NameB6Ng01-041M04
Chromosome9 (Build37)
Map Location 66,378,167 - 66,515,512
singlet/doubletdoublet
Overlap geneUsp3
Upstream genePlekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22
Downstream geneCar12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041M04.bB6Ng01-041M04.g
ACCDH868330DH868331
length976995
definitionDH868330|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M04, 5' end.DH868331|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,514,539 - 66,515,512)(66,378,167 - 66,379,164)
sequence
gaattcctatccacgtgctccggtcaaagactcaggggctacactcttgc
tttctcccactccatgcttcagccatcagttagtcctgacagcttaacct
gctaaatgcagccagagtttgtttacaatatgtacatgattcccatataa
ttgctggcaactcctgagaccggggtccagaaccggtggacgcctttatc
ggaatagtgttgttaagtgcataaaataaaatatgaaggactaccaagaa
aactgatcattctgaaatacggagcccagaataacccaaaaagcaagtct
atggtgtatggatggatgtgttgcatggctacagcattaaatgagatgat
ctggcagcaagcccacgcccctgtgagtgatagagctcatgaccacattt
ccagacacctgcaagcactctgtgtaacacgtaaccaccacggtgctgcc
cacagcggcctgggccctcttatatgagttaataatgaagagagttctca
gagacacgcccacagactggcctaataaaaacagtgactgaactgagact
cttgtttcagctgattctagactgagtcaagccaatgctaactagggcag
tggcctacatttatcattgaaggagatctaaaattaagttagagagctgg
gaccatggctcattggtaaaatacctgcctgaaactgaggctaagagcaa
caaaagtaaagacacgtacacacacacacacacacacacacacacacaca
cacacgttaagggaactcgttgggccccacacagctggtgcctcagcctg
ggtttctccgcagcctctttaacaacatcccactgacatcagtgaaagag
taaaatcctccccatagccaacaaggccctgtgtggtctgagccctgtct
actgtctgccctctctccggccagtgccctcattcactgcattctggtct
gggccatgggacctttacccagtatg
gaattcatgggcatcctgctgctgataaccccttgaagtaaacaaaaata
gtgtgaggatgttctgtctgtccattaaacatcatgaaggtctgcagccc
catgctcacaagcatgcctccagtagcccacaccctctgcctcacaattt
ctgtatgggatacctatttctcttaatttcaaaaaccacagaatattagg
gctaattgggtttgttgtgactttcactgatctttttactttagagataa
attgagggacaagtggaggtggtagcatgtgatttacctaaaatcctaga
aaagtcatagagactgcatacaaatttgcaccttttaaatggaccctgaa
atttcccgctctctcataggtctttcctagaaaagacccaaatctttaaa
ttttaaagcttaatctaatttgaaaactacatttaagcctacactaaaag
atctaagaaatttagagcacttatatatgtttaaaaactcattcttccat
ctaagaattaaagttaatctgggcccagtagggagatggctcagttgata
aaatgcttgctttgcaagcaagcagacctgagagcagtcccccagaaccc
acgtaaaaacagctggacacagcaccacacaacacgtctgtcatctctgc
actgctgaagaaaaaacaaaacacaaaaggaccccctaggattcaaatgc
ctggtcaaccagcatagctgaattggtgagcttctagttcaatgagagat
cccatatcaaacagaaaaaggaagaaagaaaagaagctaatttttaaata
tttttttaaattttttaattagatattttcttcttttacatttcaatgct
atcccaaaagtccctaataccctccttgcgcctgctcccctacccactca
ctcccactacttggcctggcaatccctgtactggggcatataaagtttgc
aagactaggggcctctcttccctgtgatggctgactaggccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66514539_66515512
seq2: B6Ng01-041M04.b_46_1021 (reverse)

seq1  CATACTGGGTAAAGGTCCCATGGCCCAGACCAGAATGCAGTGAGTGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATACTGGGTAAAGGTCCCATGGCCCAGACCAGAATGCAGTGAATGAGGG  50

seq1  C-CTGGCCGGAGGGGAGGGCAGACAGTAGACAGGGCTCAGACCACACAGG  99
      | ||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCGGA-GAGAGGGCAGACAGTAGACAGGGCTCAGACCACACAGG  99

seq1  GCCTTGTTGGCTATGGGGAGGATTTTACTC-TTCACTGATGTCAGTGGGA  148
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCTTGTTGGCTATGGGGAGGATTTTACTCTTTCACTGATGTCAGTGGGA  149

seq1  TGTTGTTAAAGAGGCTGCGGAGAAACCCAGGCCTGAGGCACCAGCTGTGT  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTGTTAAAGAGGCTGCGGAGAAACCCAGG-CTGAGGCACCAGCTGTGT  198

seq1  GGGGCCCAACGAGTT-CCTTAACGTGTGTGTGTGTGTGTGTGTGTGTGTG  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGGCCCAACGAGTTCCCTTAACGTGTGTGTGTGTGTGTGTGTGTGTGTG  248

seq1  TGTGTGTGTGTACGTGTCTTTAC-TTTGTTGCTCTTAGCCTCAGTTTCAG  296
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGTGTGTGTACGTGTCTTTACTTTTGTTGCTCTTAGCCTCAGTTTCAG  298

seq1  GCAGGTATTTTACCAATGAGCCATGGTCCCAGCTCTCTAACTTAATTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATTTTACCAATGAGCCATGGTCCCAGCTCTCTAACTTAATTTTA  348

seq1  GATCTCCTTCAATGATAAATGTAGGCCACTGCCCTAGTTAGCATTGGCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTTCAATGATAAATGTAGGCCACTGCCCTAGTTAGCATTGGCTT  398

seq1  GACTCAGTCTAGAATCAGCTGAAACAAGAGTCTCAGTTCAGTCACTGTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTCTAGAATCAGCTGAAACAAGAGTCTCAGTTCAGTCACTGTTT  448

seq1  TTATTAGGCCAGTCTGTGGGCGTGTCTCTGAGAACTCTCTTCATTATTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGCCAGTCTGTGGGCGTGTCTCTGAGAACTCTCTTCATTATTAA  498

seq1  CTCATATAAGAGGGCCCAGGCCGCTGTGGGCAGCACCGTGGTGGTTACGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATAAGAGGGCCCAGGCCGCTGTGGGCAGCACCGTGGTGGTTACGT  548

seq1  GTTACACAGAGTGCTTGCAGGTGTCTGGAAATGTGGTCATGAGCTCTATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAGAGTGCTTGCAGGTGTCTGGAAATGTGGTCATGAGCTCTATC  598

seq1  ACTCACAGGGGCGTGGGCTTGCTGCCAGATCATCTCATTTAATGCTGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGGGGCGTGGGCTTGCTGCCAGATCATCTCATTTAATGCTGTAG  648

seq1  CCATGCAACACATCCATCCATACACCATAGACTTGCTTTTTGGGTTATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAACACATCCATCCATACACCATAGACTTGCTTTTTGGGTTATTC  698

seq1  TGGGCTCCGTATTTCAGAATGATCAGTTTTCTTGGTAGTCCTTCATATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCGTATTTCAGAATGATCAGTTTTCTTGGTAGTCCTTCATATTT  748

seq1  TATTTTATGCACTTAACAACACTATTCCGATAAAGGCGTCCACCGGTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGCACTTAACAACACTATTCCGATAAAGGCGTCCACCGGTTCT  798

seq1  GGACCCCGGTCTCAGGAGTTGCCAGCAATTATATGGGAATCATGTACATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCGGTCTCAGGAGTTGCCAGCAATTATATGGGAATCATGTACATA  848

seq1  TTGTAAACAAACTCTGGCTGCATTTAGCAGGTTAAGCTGTCAGGACTAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACAAACTCTGGCTGCATTTAGCAGGTTAAGCTGTCAGGACTAAC  898

seq1  TGATGGCTGAAGCATGGAGTGGGAGAAAGCAAGAGTGTAGCCCCTGAGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTGAAGCATGGAGTGGGAGAAAGCAAGAGTGTAGCCCCTGAGTC  948

seq1  TTTGACCGGAGCACGTGGATAGGAATTC  974
      ||||||||||||||||||||||||||||
seq2  TTTGACCGGAGCACGTGGATAGGAATTC  976

seq1: chr9_66378167_66379164
seq2: B6Ng01-041M04.g_70_1064

seq1  GAATTCATGGGCATCCTGCTGCTGATAACCCCTTGAAGTAAACAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGCATCCTGCTGCTGATAACCCCTTGAAGTAAACAAAAATA  50

seq1  GTGTGAGGATGTTCTGTCTGTCCATTAAACATCATGAAGGTCTGCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGATGTTCTGTCTGTCCATTAAACATCATGAAGGTCTGCAGCCC  100

seq1  CATGCTCACAAGCATGCCTCCAGTAGCCCACACCCTCTGCCTCACAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCACAAGCATGCCTCCAGTAGCCCACACCCTCTGCCTCACAATTT  150

seq1  CTGTATGGGATACCTATTTCTCTTAATTTCAAAAACCACAGAATATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGGATACCTATTTCTCTTAATTTCAAAAACCACAGAATATTAGG  200

seq1  GCTAATTGGGTTTGTTGTGACTTTCACTGATCTTTTTACTTTAGAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGGGTTTGTTGTGACTTTCACTGATCTTTTTACTTTAGAGATAA  250

seq1  ATTGAGGGACAAGTGGAGGTGGTAGCATGTGATTTACCTAAAATCCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGACAAGTGGAGGTGGTAGCATGTGATTTACCTAAAATCCTAGA  300

seq1  AAAGTCATAGAGACTGCATACAAATTTGCACCTTTTAAATGGACCCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATAGAGACTGCATACAAATTTGCACCTTTTAAATGGACCCTGAA  350

seq1  ATTTCCCGCTCTCTCATAGGTCTTTCCTAGAAAAGACCCAAATCTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCGCTCTCTCATAGGTCTTTCCTAGAAAAGACCCAAATCTTTAAA  400

seq1  TTTTAAAGCTTAATCTAATTTGAAAACTACATTTAAGCCTACACTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGCTTAATCTAATTTGAAAACTACATTTAAGCCTACACTAAAAG  450

seq1  ATCTAAGAAATTTAGAGCACTTATATATGTTTAAAAACTCATTCTTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAAATTTAGAGCACTTATATATGTTTAAAAACTCATTCTTCCAT  500

seq1  CTAAGAATTAAAGTTAATCTGGGCCCAGTAGGGAGATGGCTCAGTTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATTAAAGTTAATCTGGGCCCAGTAGGGAGATGGCTCAGTTGATA  550

seq1  AAATGCTTGCTTTGCAAGCAAGCAGACCTGAGAGCAGTCCCCCAGAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTGCTTTGCAAGCAAGCAGACCTGAGAGCAGTCCCCCAGAACCC  600

seq1  ACGT-AAAACAGCTGGACACAGCACCACACAACACGTCTGTCATCTCTGC  649
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAAACAGCTGGACACAGCACCACACAACACGTCTGTCATCTCTGC  650

seq1  ACTGCTGAAGAAAAAACAAAACACAAAAGGACCCCCTAGGATTCAAATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAAGAAAAAACAAAACACAAAAGGACCCCCTAGGATTCAAATGC  700

seq1  CTGGTCAACCAGCATAGCTGAATTGGTGAGCTTCTAGTTCAATGAGAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAACCAGCATAGCTGAATTGGTGAGCTTCTAGTTCAATGAGAGAT  750

seq1  CCCATATCAAACAGAAAAAGGAAGAAAGAAAAGAAGCTAATTTTTAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCAAACAGAAAAAGGAAGAAAGAAAAGAAGCTAATTTTTAAATA  800

seq1  -TTTTTTAAATTTTTTAATTAGATATTTTCTTCTTTTACATTTCAAATGC  848
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTTTTAAATTTTTTAATTAGATATTTTCTTCTTTTACATTTC-AATGC  849

seq1  TATCCCAAAAGTCCCTAATACCCTCCTTGCGCCCTGCTCCCCTACCCACT  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATCCCAAAAGTCCCTAATACCCTCCTTGCG-CCTGCTCCCCTACCCACT  898

seq1  CACTCCCACTACTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGT  948
      |||||||||||||||| ||||||| | |||||||||||||||||||||||
seq2  CACTCCCACTACTTGG-CCTGGCAAT-CCCTGTACTGGGGCATATAAAGT  946

seq1  TTGCAAGACCAAGGGGCCTCTCTTCCCTGTGATGGCTGACTAGGCCATCT  998
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGA-CTAGGGGCCTCTCTTCCCTGTGATGGCTGACTAGGCCATCT  995