BAC Information

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BAC

Clone NameB6Ng01-041N10
Chromosome9 (Build37)
Map Location 89,389,603 - 89,530,698
singlet/doubletdoublet
Overlap geneAF529169
Upstream gene2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneTmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041N10.bB6Ng01-041N10.g
ACCDH868383DH868384
length1,051864
definitionDH868383|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N10, 5' end.DH868384|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,389,603 - 89,390,241)(89,529,835 - 89,530,698)
sequence
gaattccttttctttggaggtctgagctctgaaaggttctggaaagaacc
agaatgagctggtgtcagaggtaaggaaagcaccatcctccagcacaata
gcatcccacaggctcacctagagtgaatgcctcacacgtcaatagttgtt
acgcatccatgaggggtgtatttcaagaaccccagaaaatgcctgaaatt
gatgaccctcctgagcatagtaagttactaacaacaatagtaataaaatt
gaacaggtatggagactggagagatggttcagtggttaagagcactgact
gctctttcagaggtcctgagttcaaatcccagcaaccacatggtggctca
caaccatctgtaatgggatctgatgccctcttctggtgtgtctgaagaca
gcaatagtgtactcatacacataaaataaataagttaattttaaaaattg
aacagttatactattaaaaaatgcaagcatcactacctttattctttaag
actattcttaagttgtaagggtccatgatttgagaaagaatgatatctgg
gactcaaatagtatgcaaacaacaaagagtgttttattctgcagaagtct
agcatgctggggtctcctattaccagaatatggagacacccaagcgagct
tgcagtcctgatttaatgcacaatagggaatttctgggtaggtgacctct
ctgctaatctgttaggtccatctctacggacattccgttactggggtgta
ggggctggaaacttgctggcgaggatctagaaactgctgctgacccattg
tccttgcctcgggccaggtgactgggaagctcctgaggcctggacttgcc
tggaattgcccagttcttggaaacagatttaggcctagtctccttaactg
ctaattgtaagtctgtcatgggatcagcctagctttctcaaagtaaataa
gggtttatttgaaatcagactacacagtaatctggcactaattcaattat
ccactgctaagtgactaattgatctataacacatggatacactgggcaat
g
gaattcttttctatttctgaaaatgtagagcaagcacacagcaggcccaa
agggcaagaagccatgtttttgtcaggcagaatcctgattagcaggcagt
ttggggtggtggtttgggtcaaaagcctatccctggtagacaaaaattca
catgctggaaatggtttgcagggtcttgcaacatagctgtttctgaaaga
ctgaatactaggttattggtgctgttcacaaagtttatctgcacacctca
tgaagttatgcagtacgaacaaagcatttgttctagtcacagaattatca
tatatttaagatccatgttgtccaacttgatgagttacttttctgtaatg
ccaagaataagtgtagcaactggatagaggtaggattcaccctgtgattc
tcctttgagcttcaaggacagctaggctaagaggtgtttatgagcatatt
gtgataggtacagcttgaagaccctataaacgaatttgcagtcatgtaag
tatttggttcacaggaggcttccaaaatggtgacactagccaaacctagt
agtgatagctatgctaaaataacaccacaccttttttgtgagatatagtt
tttcatatttagtttattcatctgatagtcataagggctttggacacaga
catagttttgattacttttttagggatctctggtggttaatggtcatttg
tcaacttgtgttctgtagtcattttctctaaatggtaacattccctccaa
gaggctaataagattcataaagtagtcaagagttcccaagtctcaaagat
gagactttttgaacaagctgtatagacagaaactttgctaaggagaagag
ttctatgatgggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89389603_89390241
seq2: B6Ng01-041N10.b_47_685

seq1  GAATTCCTTTTCTTTGGAGGTCTGAGCTCTGAAAGGTTCTGGAAAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCTTTGGAGGTCTGAGCTCTGAAAGGTTCTGGAAAGAACC  50

seq1  AGAATGAGCTGGTGTCAGAGGTAAGGAAAGCACCATCCTCCAGCACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCTGGTGTCAGAGGTAAGGAAAGCACCATCCTCCAGCACAATA  100

seq1  GCATCCCACAGGCTCACCTAGAGTGAATGCCTCACACGTCAATAGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCACAGGCTCACCTAGAGTGAATGCCTCACACGTCAATAGTTGTT  150

seq1  ACGCATCCATGAGGGGTGTATTTCAAGAACCCCAGAAAATGCCTGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATCCATGAGGGGTGTATTTCAAGAACCCCAGAAAATGCCTGAAATT  200

seq1  GATGACCCTCCTGAGCATAGTAAGTTACTAACAACAATAGTAATAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCCTCCTGAGCATAGTAAGTTACTAACAACAATAGTAATAAAATT  250

seq1  GAACAGGTATGGAGACTGGAGAGATGGTTCAGTGGTTAAGAGCACTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGTATGGAGACTGGAGAGATGGTTCAGTGGTTAAGAGCACTGACT  300

seq1  GCTCTTTCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  350

seq1  CAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACA  400

seq1  GCAATAGTGTACTCATACACATAAAATAAATAAGTTAATTTTAAAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGTGTACTCATACACATAAAATAAATAAGTTAATTTTAAAAATTG  450

seq1  AACAGTTATACTATTAAAAAATGCAAGCATCACTACCTTTATTCTTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTATACTATTAAAAAATGCAAGCATCACTACCTTTATTCTTTAAG  500

seq1  ACTATTCTTAAGTTGTAAGGGTCCATGATTTGAGAAAGAATGATATCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTTAAGTTGTAAGGGTCCATGATTTGAGAAAGAATGATATCTGG  550

seq1  GACTCAAATAGTATGCAAACAACAAAGAGTGTTTTATTCTGCAGAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAATAGTATGCAAACAACAAAGAGTGTTTTATTCTGCAGAAGTCT  600

seq1  AGCATGCTGGGGTCTCCTATTACCAGAATATGGAGACAC  639
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTGGGGTCTCCTATTACCAGAATATGGAGACAC  639

seq1: chr9_89529835_89530698
seq2: B6Ng01-041N10.g_72_935 (reverse)

seq1  GGCCCATCATAGAACCTCTTCTCCCTAGCAAAGGTTACTGTCTATACAGC  50
      |||||||||||||| ||||||||| ||||||| ||| |||||||||||| 
seq2  GGCCCATCATAGAA-CTCTTCTCCTTAGCAAA-GTTTCTGTCTATACAG-  47

seq1  CTTGTATCAAAAGTCTCATCTTTGAGACTT-GGAACTCTTGACTACTTTA  99
      |||||   |||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGTTCAAAAAGTCTCATCTTTGAGACTTGGGAACTCTTGACTACTTTA  97

seq1  TGAATCTTATTAGCCTCTTGGAGGGAATGTTACCATTTAGAGAAAATGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTATTAGCCTCTTGGAGGGAATGTTACCATTTAGAGAAAATGAC  147

seq1  TACAGAACACAAGTTGAC-AATGACCATTAACCACCAGAGATCCCTAAAG  198
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TACAGAACACAAGTTGACAAATGACCATTAACCACCAGAGATCCCTAAAA  197

seq1  AAGTAATC-AAACTATGTCTGTGTCCAAAGCCCTTATGACTATCAGATGA  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCAAAACTATGTCTGTGTCCAAAGCCCTTATGACTATCAGATGA  247

seq1  ATAAACTAAATATGAAAAACTATATCTCACAAAAAAGGTGTGGTGTTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAAATATGAAAAACTATATCTCACAAAAAAGGTGTGGTGTTATT  297

seq1  TTAGCATAGCTATCACTACTAGGTTTGGCTAGTGTCACCATTTTGGAAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGCTATCACTACTAGGTTTGGCTAGTGTCACCATTTTGGAAGC  347

seq1  CTCCTGTGAACCAAATACTTACATGACTGCAAATTCGTTTATAGGGTCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGAACCAAATACTTACATGACTGCAAATTCGTTTATAGGGTCTT  397

seq1  CAAGCTGTACCTATCACAATATGCTCATAAACACCTCTTAGCCTAGCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTACCTATCACAATATGCTCATAAACACCTCTTAGCCTAGCTGT  447

seq1  CCTTGAAGCTCAAAGGAGAATCACAGGGTGAATCCTACCTCTATCCAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGCTCAAAGGAGAATCACAGGGTGAATCCTACCTCTATCCAGTT  497

seq1  GCTACACTTATTCTTGGCATTACAGAAAAGTAACTCATCAAGTTGGACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTTATTCTTGGCATTACAGAAAAGTAACTCATCAAGTTGGACAA  547

seq1  CATGGATCTTAAATATATGATAATTCTGTGACTAGAACAAATGCTTTGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCTTAAATATATGATAATTCTGTGACTAGAACAAATGCTTTGTT  597

seq1  CGTACTGCATAACTTCATGAGGTGTGCAGATAAACTTTGTGAACAGCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTGCATAACTTCATGAGGTGTGCAGATAAACTTTGTGAACAGCACC  647

seq1  AATAACCTAGTATTCAGTCTTTCAGAAACAGCTATGTTGCAAGACCCTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTAGTATTCAGTCTTTCAGAAACAGCTATGTTGCAAGACCCTGC  697

seq1  AAACCATTTCCAGCATGTGAATTTTTGTCTACCAGGGATAGGCTTTTGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTTCCAGCATGTGAATTTTTGTCTACCAGGGATAGGCTTTTGAC  747

seq1  CCAAACCACCACCCCAAACTGCCTGCTAATCAGGATTCTGCCTGACAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCACCACCCCAAACTGCCTGCTAATCAGGATTCTGCCTGACAAAA  797

seq1  ACATGGCTTCTTGCCCTTTGGGCCTGCTGTGTGCTTGCTCTACATTTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTTCTTGCCCTTTGGGCCTGCTGTGTGCTTGCTCTACATTTTCA  847

seq1  GAAATAGAAAAGAATTC  864
      |||||||||||||||||
seq2  GAAATAGAAAAGAATTC  864