BAC Information

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BAC

Clone NameB6Ng01-042B21
Chromosome9 (Build37)
Map Location 19,908,145 - 20,015,289
singlet/doubletdoublet
Overlap geneOlfr869, Olfr870
Upstream geneOlfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868
Downstream geneOlfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042B21.bB6Ng01-042B21.g
ACCDH868582DH868583
length7581,077
definitionDH868582|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B21, 5' end.DH868583|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,908,145 - 19,908,890)(20,014,207 - 20,015,289)
sequence
gaattcatctgtgttcaaatgaaaatgagcacacaacacatcagaacctg
tggttgaatgaatttctgatgggaaagtttaaacttagaactcaaaacat
tggtattacaaatctaatctataacaaattaataactgaatgatttatgg
aagcctgagaacataaaaggaaaccaacccaaactaatgaataaaaacaa
atagtaaggtcagggaaaaaaatcaatgaaatagaaacaaagaaaaataa
aatggttaaaatgaagagctgattcttgagaaacatgaagaatattgata
accatttagccaaattaagcaaaagaaataggaaaaatacaaagatgaat
caaattatataaacaacacagaagaatgtacagatacctggcaggtattt
ttgtttaagccaggtttttccctgctcattgtgatgtgcccattttatct
tcccttgtttgaacattggtagtttatatgcacttagaaatttatacatt
tattttagaactcctagtttgttggaataagtttttaaagtatgggctta
tgatattttggattgtactggtatatgttggtgtgataaaaagatctgta
aagaggaatgggtgataacagaggtgggtaagagataatgatggatgagg
agtgagaattaaacatggtacaatatgtgtgtgcaagtacttaatttggt
caaaagaaatatacacaaacagaaaaaaaagaatttaaaattagggcaag
tcatttgt
gaattcttacctacagtaaaagcaacaaccaaactattattttaaaaatt
gtcacattataaataacatattcttaagaagctcacatataaaaaaacaa
tctacttgttctgtttcttgtgtctggtattgctggagaaaaatgttgag
ttacatcagtaaatttcaaagacttgagttaggcttttaatgttttttga
aaatcttgtggaagctcttcaagaaaagtttccttgggaaggcctgtctt
tgatgctgtgaaaataaagatgcagttttgttctttaactcacattttca
tctcccagaagtagagatggatgtaagaagtggcagttataatgtcaaac
aattgaaaactaggatagtttatttgctaagtgggttcagagggcatctt
tgaatgtaatcagggttggtgatgtcaggattggagtccccaaggatgtt
tgtctgacaaaagaattatctagttggtggtttgagaataaggattttta
gcagggaaaattaaaggaccagatgcaagaatcaaccaaggaatcaagtg
ttcttagcaaaattgtttaagggcacagtggtaaaagggaaggcaaagaa
tggcatgagagaaatagtccaggacaacttctaaaatacatagatgaaca
cagagaagtagtgatggatggattatacacaaggctgtatactgactgca
ctgaaaaatcatgttgtaaattattattttccttgagtttggagccaaca
atagatttaggacagactaaggatgactaatttttaaaaattatttctta
gccattttgatattgtatattttctgttgagaactcaaggagtgtaagtg
tagagggatagcaatatgaaattttcacatatttgaactgcaaggagaaa
ctcacgctttctgtatcaaaagataaaaaataagaaagggctggactagt
agaaaatgatgtcaatatcttgctacagagaccgattgagcatgagacct
actcagtgaataaagaaaaatattgagccatgactcttcaaggtttccaa
atctacatggtgtgaggtagaaaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19908145_19908890
seq2: B6Ng01-042B21.b_42_796

seq1  GAATTCATCTGTGTTCAAATGAAAATGAGCACACAACACATCAGAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTGTTCAAATGAAAATGAGCACACAACACATCAGAACCTG  50

seq1  TGGTTGAATGAATTTCTGATGGGAAAGTTTAAACTTAGAACTCAAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAATGAATTTCTGATGGGAAAGTTTAAACTTAGAACTCAAAACAT  100

seq1  TGGTATTACAAATCTAATCTATAACAAATTAATAACTGAATGATTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTACAAATCTAATCTATAACAAATTAATAACTGAATGATTTATGG  150

seq1  AAGCCTGAGAACATAAAAGGAAACCAACCCAAACTAATGAATAAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAGAACATAAAAGGAAACCAACCCAAACTAATGAATAAAAACAA  200

seq1  ATAGTAAGGTCAGGGAAAAAAATCAATGAAATAGAAACAAAGAAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGGTCAGGGAAAAAAATCAATGAAATAGAAACAAAGAAAAATAA  250

seq1  AATGGTTAAAATGAAGAGCTGATTCTTGAGAAACATGAAGAATATTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAAAATGAAGAGCTGATTCTTGAGAAACATGAAGAATATTGATA  300

seq1  ACCATTTAGCCAAATTAAGCAAAAGAAATAGGAAAAATACAAAGATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAGCCAAATTAAGCAAAAGAAATAGGAAAAATACAAAGATGAAT  350

seq1  CAAATTATATAAACAACACAGAAGAATGTACAGATACCTGGCAGGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATATAAACAACACAGAAGAATGTACAGATACCTGGCAGGTATTT  400

seq1  TTGTTTAAGCCAGGTTTTTCCCTGCTCATTGTGATGTGCCCATTTTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGCCAGGTTTTTCCCTGCTCATTGTGATGTGCCCATTTTATCT  450

seq1  TCCCTTGTTTGAACATTGGTAGTTTATATGCACTTAGAAATTTATACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTTTGAACATTGGTAGTTTATATGCACTTAGAAATTTATACATT  500

seq1  TATTTTAGAACTCCTAGTTTGTTGGAATAAGTTTTTAAAGTATGGGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAACTCCTAGTTTGTTGGAATAAGTTTTTAAAGTATGGGCTTA  550

seq1  TGATATTTTGGATTGTACTGGTATATGTTGGTGTGATAAAAAGATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTGGATTGTACTGGTATATGTTGGTGTGATAAAAAGATCTGTA  600

seq1  AAGAGGAATGGGTGATAACAGAGGTGGGTAAGAGATAATGATGGATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATGGGTGATAACAGAGGTGGGTAAGAGATAATGATGGATGAGG  650

seq1  AGTGAGAATT-AACATGGTACAATATGTGTGTGCAAGTAC-TAATTT-GT  697
      |||||||||| ||||||||||||||||||||||||||||| |||||| ||
seq2  AGTGAGAATTAAACATGGTACAATATGTGTGTGCAAGTACTTAATTTGGT  700

seq1  CAAA--GAATATACACAAACAG-AAAAAAAGAATT--AAAATAAGGCAAG  742
      ||||   ||||||||||||||| ||||||||||||  ||| || ||||||
seq2  CAAAAGAAATATACACAAACAGAAAAAAAAGAATTTAAAATTAGGGCAAG  750

seq1  -CATT  746
       ||||
seq2  TCATT  755

seq1: chr9_20014207_20015289
seq2: B6Ng01-042B21.g_68_1144 (reverse)

seq1  GTCCTTTCTACCTCACACCATGTAGATTTGAAAACTTTTGAGAGTCATTG  50
      |||||||||||||||||||||||||||||| |||| ||  ||||||| ||
seq2  GTCCTTTCTACCTCACACCATGTAGATTTGGAAACCTTGAAGAGTCA-TG  49

seq1  GCTCCATTATTTTTCTTTATTCACTTGAGTAGGTCTCATGCTCAATCGGT  100
      ||| || ||||||||||||||||| |||||||||||||||||||||||||
seq2  GCT-CAATATTTTTCTTTATTCAC-TGAGTAGGTCTCATGCTCAATCGGT  97

seq1  CTCTGTTAGCAAGATATTGACATCATTTTTCTACTAGTTCCAGCCCTTTC  150
      ||||| ||||||||||||||||||| ||||||||||| ||||||||||||
seq2  CTCTG-TAGCAAGATATTGACATCA-TTTTCTACTAG-TCCAGCCCTTTC  144

seq1  TTATTTTTTATCTTTTGATACAGAAAGCGTGAGTTTCTCCTTGCAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATCTTTTGATACAGAAAGCGTGAGTTTCTCCTTGCAGTTCA  194

seq1  AATATGTGAAAATTTCATATTGCTATCCCTCTACACTTACACTCCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGAAAATTTCATATTGCTATCCCTCTACACTTACACTCCTTGAG  244

seq1  TTCTCAACAGAAAATATACAATATCAAAATGGCTAAGAAATAATTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACAGAAAATATACAATATCAAAATGGCTAAGAAATAATTTTTAA  294

seq1  AAATTAGTCATCCTTAGTCTGTCCTAAATCTATTGTTGGCTCCAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTCATCCTTAGTCTGTCCTAAATCTATTGTTGGCTCCAAACTCA  344

seq1  AGGAAAATAATAATTTACAACATGATTTTTCAGTGCAGTCAGTATACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAATAATTTACAACATGATTTTTCAGTGCAGTCAGTATACAGC  394

seq1  CTTGTGTATAATCCATCCATCACTACTTCTCTGTGTTCATCTATGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATAATCCATCCATCACTACTTCTCTGTGTTCATCTATGTATTT  444

seq1  TAGAAGTTGTCCTGGACTATTTCTCTCATGCCATTCTTTGCCTTCCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTGTCCTGGACTATTTCTCTCATGCCATTCTTTGCCTTCCCTTT  494

seq1  TACCACTGTGCCCTTAAACAATTTTGCTAAGAACACTTGATTCCTTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGTGCCCTTAAACAATTTTGCTAAGAACACTTGATTCCTTGGTT  544

seq1  GATTCTTGCATCTGGTCCTTTAATTTTCCCTGCTAAAAATCCTTATTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGCATCTGGTCCTTTAATTTTCCCTGCTAAAAATCCTTATTCTC  594

seq1  AAACCACCAACTAGATAATTCTTTTGTCAGACAAACATCCTTGGGGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCAACTAGATAATTCTTTTGTCAGACAAACATCCTTGGGGACTC  644

seq1  CAATCCTGACATCACCAACCCTGATTACATTCAAAGATGCCCTCTGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGACATCACCAACCCTGATTACATTCAAAGATGCCCTCTGAACC  694

seq1  CACTTAGCAAATAAACTATCCTAGTTTTCAATTGTTTGACATTATAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCAAATAAACTATCCTAGTTTTCAATTGTTTGACATTATAACTG  744

seq1  CCACTTCTTACATCCATCTCTACTTCTGGGAGATGAAAATGTGAGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTTACATCCATCTCTACTTCTGGGAGATGAAAATGTGAGTTAAA  794

seq1  GAACAAAACTGCATCTTTATTTTCACAGCATCAAAGACAGGCCTTCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAACTGCATCTTTATTTTCACAGCATCAAAGACAGGCCTTCCCAA  844

seq1  GGAAACTTTTCTTGAAGAGCTTCCACAAGATTTTCAAAAAACATTAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTTTCTTGAAGAGCTTCCACAAGATTTTCAAAAAACATTAAAAG  894

seq1  CCTAACTCAAGTCTTTGAAATTTACTGATGTAACTCAACATTTTTCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCAAGTCTTTGAAATTTACTGATGTAACTCAACATTTTTCTCCA  944

seq1  GCAATACCAGACACAAGAAACAGAACAAGTAGATTGTTTTTTTATATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCAGACACAAGAAACAGAACAAGTAGATTGTTTTTTTATATGTG  994

seq1  AGCTTCTTAAGAATATGTTATTTATAATGTGACAATTTTTAAAATAATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTAAGAATATGTTATTTATAATGTGACAATTTTTAAAATAATAG  1044

seq1  TTTGGTTGTTGCTTTTACTGTAGGTAAGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  TTTGGTTGTTGCTTTTACTGTAGGTAAGAATTC  1077