BAC Information

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BAC

Clone NameB6Ng01-042L05
Chromosome18 (Build37)9 (Build37)
Map Location 18,109,687 - 18,110,43576,752,138 - 76,752,692
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L05.bB6Ng01-042L05.g
ACCDH868993DH868994
length995549
definitionDH868993|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L05, 5' end.DH868994|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,109,687 - 18,110,435)(76,752,138 - 76,752,692)
sequence
gaattccctggtggaatttttagggtcacttatatatactatcatatcgt
ctgcaaatagtgatattttgacttcttcctttctaatttgtatccccttg
atctccttttgttgttgaattgctctggctaggacttcaagtactatatt
gcataggtagggagaaagtgggcagccttgtctagttcctggttttagtg
ggattgctttgagtttctctccatttactttgatgtggctactggcttgc
tgtatgttgcttttattatgtttaggtatgggccttgaattcctgatctt
tctatgacttttattatgaaggggtattggattttatcaaatgctttctc
agcatctaaagagatgatcatgtgatttttgtttttgaatttgtttatat
agtggattaagttgatgcatttctgtatattaaaccatccctgcatccct
gggatgaagcctacttggtcacaatggatgatcgttttgatgtattcttg
gattcagtttgtgagaattttattgagtatttttgcatcgatattcataa
gggaaattggtctgaagttatctttctttgttggatctttgtgtggggtt
tagatatcagagtaattgtggcttcatagaatgaattggatagagtacct
tctgtttctattttgtggaacagtttgaggagagttggaattaggtgttc
tttgaaggtctgatagaattctgcactaaacccatctggtcctgggcttt
ttgttggtgtttgcaaataacatgtctttcccttttttcttattttttta
attagatattttctttatatacatttcaatttcaaatgctaccccgaaag
tttcctatactctccccctgacctcctcccctacccaaacactcccactt
ctagactctggcatccccttgtactgcggcagaggccccttgttcctggg
cttttttggttgggagactattaattactgcttctattccttggg
atatattcctttgtttatagaagtgaaatcctatcttttacagaaaataa
gaaaagaattagacattttcacagtatgggaaacatcttgaggattgttt
tgacttgatgtatttactcattgggtaggacgttatttgggtttccaaaa
ggatggcgtaagcatttgttgtcaagtggaaatgtaattatgtaaactcc
atacactgcctcacttaccacattgtcttctggattgatagccgatgaga
cattaatagaccagttttcaattatactacatccagattaatagaagagg
aaaagataatgggtggctaaatgctgaccaaatgaagctcattaaacaat
ttgaaggaaaaaaaatcaagttgtcttctaggcataatagtgtatgactg
taatccagcatttagagagcagaggcaggaaggaattctaggatctcttc
aataggtagaaagttcaaggccaccctaaaatacatgagaccaggcctca
aaagaaagataaaaaggaagaaaggaagggatgaagggaggaagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18109687_18110435
seq2: B6Ng01-042L05.b_51_801 (reverse)

seq1  ACCAA-AAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGA  49
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCAACAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAATTCTATCAGA  50

seq1  CCTCCAAAGAAGATCTAATCCCAGTTCTTCACAAACTATTCCACAAAATA  99
      ||| ||||||| | ||||| |||  ||| | |||||| ||||||||||||
seq2  CCTTCAAAGAACACCTAATTCCAACTCTCCTCAAACTGTTCCACAAAATA  100

seq1  GAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCT  149
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  GAAACAGAAGGTACTCTATCCAATTCATTCTATGAAGCCACAATTACTCT  150

seq1  GATACCTAAA--CCACAAAAAGACCCCACAAAGATAGAGAACTTCAGACC  197
      |||| |||||  ||||| ||||| || ||||||| ||| |||||||||||
seq2  GATATCTAAACCCCACACAAAGATCCAACAAAGAAAGATAACTTCAGACC  200

seq1  AATATCCCTTCTGAATATTGGTGCAAAAATCCTCAATAAAGTTCTTGCTA  247
      ||| |||||| ||||||| | ||||||||| ||||||||| ||||  | |
seq2  AATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCACAA  250

seq1  ACCGAATCCAAGAACACATCAAAACAATCTTCCATCCTGACCAAGTAGGT  297
      || ||||||||||| |||||||||| ||| |||||  |||||||||||| 
seq2  ACTGAATCCAAGAATACATCAAAACGATCATCCATTGTGACCAAGTAGGC  300

seq1  TTCATCCCAGGGATGCAGGGATGGTTCAATATACAGAAATCCATCAATGT  347
      |||||||||||||||||||||||||| ||||||||||||| ||||||  |
seq2  TTCATCCCAGGGATGCAGGGATGGTTTAATATACAGAAATGCATCAACTT  350

seq1  AATCCAGTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT  397
      |||||| |||||||||||| ||||| ||||||| |||||||||||||| |
seq2  AATCCACTATATAAACAAATTCAAAAACAAAAATCACATGATCATCTCTT  400

seq1  TAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGATAAAA  447
      |||||||||||||||||||||| ||||||||| |||| ||||| ||||||
seq2  TAGATGCTGAGAAAGCATTTGATAAAATCCAATACCCCTTCATAATAAAA  450

seq1  GTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGC  497
      ||| | ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCATAGAAAGATCAGGAATTCAAGGCCCATACCTAAACATAATAAAAGC  500

seq1  AATCTACAGCAAACCAGTAGCCAGCATCAAAGTAAATGGTGAGAAGCTTG  547
      ||  |||||||| |||||||||| ||||||||||||||| ||||| ||  
seq2  AACATACAGCAAGCCAGTAGCCA-CATCAAAGTAAATGGAGAGAAACTCA  549

seq1  AAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCC  597
      ||||||||||||||||| |||| |||||||||||||| ||||| ||||||
seq2  AAGCAATCCCACTAAAACCAGGAACTAGACAAGGCTGCCCACTTTCTCCC  599

seq1  TACCCATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACA  647
      |||| || ||| || |||||||||||||||||||||||||||  ||||||
seq2  TACCTATGCAATATAGTACTTGAAGTCCTAGCCAGAGCAATTCAACAACA  649

seq1  AAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAATTATCAC  697
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  AAAGGAGATCAAGGGGATACAAATTAGAAAGGAAGAAGTCAAAATATCAC  699

seq1  TTTTTGCAGATGATATGATAGTATATATACATGACCCTAAAAATTCCACC  747
      | |||||||| ||||||||||||||||||  |||||||||||||||||||
seq2  TATTTGCAGACGATATGATAGTATATATAAGTGACCCTAAAAATTCCACC  749

seq1  AG  749
      ||
seq2  AG  751

seq1: chr9_76752138_76752692
seq2: B6Ng01-042L05.g_66_620

seq1  GAATTCATATATTCCTTTGTTTATAGAAGTGAAATCCTATCTTTTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATTCCTTTGTTTATAGAAGTGAAATCCTATCTTTTACAGA  50

seq1  AAATAAGAAAAGAATTAGACATTTTCACAGTATGGGAAACATCTTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAAGAATTAGACATTTTCACAGTATGGGAAACATCTTGAGGA  100

seq1  TTGTTTTGACTTGATGTATTTACTCATTGGGTAGGACGTTATTTGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGACTTGATGTATTTACTCATTGGGTAGGACGTTATTTGGGTTT  150

seq1  CCAAAAGGATGGCGTAAGCATTTGTTGTCAAGTGGAAATGTAATTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGATGGCGTAAGCATTTGTTGTCAAGTGGAAATGTAATTATGTA  200

seq1  AACTCCATACACTGCCTCACTTACCACATTGTCTTCTGGATTGATAGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATACACTGCCTCACTTACCACATTGTCTTCTGGATTGATAGCCG  250

seq1  ATGAGACATTAATAGACCAGTTTTCAATTATACTACATCCAGATTAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACATTAATAGACCAGTTTTCAATTATACTACATCCAGATTAATAG  300

seq1  AAGAGGAAAAGATAATGGGTGGCTAAATGCTGACCAAATGAAGCTCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAAGATAATGGGTGGCTAAATGCTGACCAAATGAAGCTCATTA  350

seq1  AACAATTTGAAGGAAAAAAAATCAAGTTGTCTTCTAGGCATAATAGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGAAGGAAAAAAAATCAAGTTGTCTTCTAGGCATAATAGTGTA  400

seq1  TGACTGTAATCCAGCATTTAGAGAGCAGAGGCAGGAAGGAATTCTAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTAATCCAGCATTTAGAGAGCAGAGGCAGGAAGGAATTCTAGGAT  450

seq1  CTCTTCAATAGGTAGAAAGTTCAAGGCCACCCTAAAATACATGAGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAATAGGTAGAAAGTTCAAGGCCACCCTAAAATACATGAGACCAG  500

seq1  GCCTCAAAAGAAAGATAAAAAGGAAGAAAGGAAGGGATGAAGGGAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAAAGAAAGATAAAAAGGAAGAAAGGAAGGGATGAAGGGAGGAAG  550

seq1  GGAGA  555
      |||||
seq2  GGAGA  555