BAC Information

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BAC

Clone NameB6Ng01-043A08
Chromosome9 (Build37)
Map Location 74,761,689 - 74,900,400
singlet/doubletdoublet
Overlap geneBC031353, Arpp19
Upstream geneUnc13c, Wdr72, Nr1h2-ps, LOC100040764, Onecut1
Downstream geneLOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043A08.bB6Ng01-043A08.g
ACCDH869212DH869213
length1,1651,131
definitionDH869212|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A08, 5' end.DH869213|Mus musculus domesticus DNA, BAC clone: B6Ng01-043A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,899,211 - 74,900,400)(74,761,689 - 74,762,843)
sequence
gaattctttgacattatcacccatactatggtacatacttgaaatacttt
acagtttaatttaaaacattgtaatcgcttcttttcatacatattcattt
catacatgaaccatgtgaaatattgacagagatacatgcacctggaaata
caggaataaagacacagacattcaactcagcttgtcagcacactgagctc
acagggaaaacatgtgaagatagcactcagcaacttacccctttctgcaa
tcttttccttaaaaaatcagaccctccaggcttttgtcccaagtgaggat
accttgcctttaactttgcttcttcagctttctctggactagttacttta
tcttccatttcctgaaataatttcaagtaaattatttctgttacaactga
attttgaaaataattcaccttttaatatctagtctctggctttcttgttg
aactccaagcaatacagcctttaagaaatcaagcccaggaacctttcaaa
cgcctctatcttttttctcgaatgtcccatgtgatagctctattatagct
gtgatgcatgtataacaccccacacactggataaaaataccgagatagct
cagctctcaagtcttgcttgcagttactttccagtcatgtataatacatt
caaaattagtcaccttctatggaactcttcagctctttgtctatatttag
agaattttcctaatactatcaaaaatctaaaagttcgttgtgatttcctt
atttaaaatcacgtatgattttaaactccttagactctttactagacatt
aacaacagcccaaatactagcatattttccctaagtaaatcaatttagaa
gaccttgatatcgataatggtatttttttttcatcaatcctcacatctgg
ctgtgtgtgagagttcatccctgtaattacagcacccaggaatctgaggc
agaagactatagcaagttcaaggctggcctcagtgagaaagttcctgttc
tacaacaaaaggggaaattctgtcatgtcaaaaaaacaaaaacaaaaacc
ccacatactttagttttgagctgtttttgaaagtcgtcattaatgtaccc
cctccacccaggcactgggggccatgtaccctagtatgttctatctcctt
atgcccctggctctt
gaattcagccatctgggatgctggacaagaggacggaacaactgagacca
ctgggtgaggggaagctggaagtggggctacatgaagcacagtctttcag
agtgcagtggacactggtggaagatggccagagaggcaagagaagaaggc
agtggagatgacctagcattgggtcttgtaggtccagggacctcactttc
cttccagctcataaatagtttttgaggtgctgggttgtaatctgggattc
atgtgataagcgaacattttcctaccaatctacttttatttttagttttt
tttttaaagattgattggtttatttttatgtatatgagtacaccgtggct
gcactgatggttgtgggccatcatgtggttgctgggaatgaaggttgctt
gctccggtcagccccgctcactccagcctaaagatttatttattattata
tctaagctgtcttcagacgcaccagaagaggccgtcagatctcattatag
atggttgtgaaccatatggttgctgggatttgaactcgggacctttggaa
gagcagtcagggctcttaaccactgaaccatctctccagcccctcctacc
aatctactatctggacccctaaataattttttaaagtatttgttattcca
gaaaacaatatttttaaattgtattttattttatgtacattggtgtgatg
gtgttatataccctggagctggcattacagacagtttttgagctgccaca
tggttgctgggaattaaacccaggtcctctggaagaatagccagtgcttt
taaccactgagccatctctccagccccagaagtacgtattctttttttta
aaagcttttttttttttaacttattcacttacatcctgctcactgcccct
cccactcataccctcctacagtcctccccccccctctgagcagtgagggc
caccctaggaatccacctggcacctcagtctctgtgaagctaagcacatc
ctctccactgaggccagacaggcagcccagctagaagacctatccacaga
ccgcacggctttgggatagctgctcatgttgggacccatgagaacaagct
gcacacctggctcatgtgtgggggagcctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74899211_74900400
seq2: B6Ng01-043A08.b_41_1205 (reverse)

seq1  AAGA-CCAGCGGCATAAACGAGTGATAGAACATTAACTAGCGTACATGGG  49
      |||| |||| |||||||    | ||||||||||  ||||| |||||| ||
seq2  AAGAGCCAGGGGCATAA---GGAGATAGAACAT--ACTAGGGTACAT-GG  44

seq1  CCCCCAAGTTGCACTGGGGTGGAGGGGGTACATTTAATGACGACCTTTCC  99
      ||||||   ||| || |||||||||||||||| |||||||||| ||||| 
seq2  CCCCCA--GTGC-CT-GGGTGGAGGGGGTACA-TTAATGACGA-CTTTC-  87

seq1  AAAAAACAGCCTCCAAAACCTAAAAGTATGTGGGGTTTTTTTGTTTTTTG  149
       |||||||||   ||||||   ||||||||||||||||||    ||||||
seq2  -AAAAACAGC--TCAAAAC--TAAAGTATGTGGGGTTTTT---GTTTTTG  129

seq1  TTTTTTTGACATGAACAGAATTTCCCCTTTTGTTGGTAGAAACAGGAACT  199
      ||||||||||||| |||||||||||||||||||| |||| ||||||||||
seq2  TTTTTTTGACATG-ACAGAATTTCCCCTTTTGTT-GTAG-AACAGGAACT  176

seq1  TTCTCACTTGAGGCCAGCCTTGAACTTGCTATAGTCTTCCTGCCTCAGAT  249
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTCAC-TGAGGCCAGCCTTGAACTTGCTATAGTCTT-CTGCCTCAGAT  224

seq1  TCCTGGGTGCTGTAATTACAGGGATGAACTCTCACACACAGCCAGATGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTGCTGTAATTACAGGGATGAACTCTCACACACAGCCAGATGTG  274

seq1  AGGATTGATGAAAAAAAAATACCATTATCGATATCAAGGTCTTCTAAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGATGAAAAAAAAATACCATTATCGATATCAAGGTCTTCTAAATT  324

seq1  GATTTACTTAGGGAAAATATGCTAGTATTTGGGCTGTTGTTAATGTCTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTTAGGGAAAATATGCTAGTATTTGGGCTGTTGTTAATGTCTAG  374

seq1  TAAAGAGTCTAAGGAGTTTAAAATCATACGTGATTTTAAATAAGGAAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCTAAGGAGTTTAAAATCATACGTGATTTTAAATAAGGAAATC  424

seq1  ACAACGAACTTTTAGATTTTTGATAGTATTAGGAAAATTCTCTAAATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGAACTTTTAGATTTTTGATAGTATTAGGAAAATTCTCTAAATATA  474

seq1  GACAAAGAGCTGAAGAGTTCCATAGAAGGTGACTAATTTTGAATGTATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAGCTGAAGAGTTCCATAGAAGGTGACTAATTTTGAATGTATTA  524

seq1  TACATGACTGGAAAGTAACTGCAAGCAAGACTTGAGAGCTGAGCTATCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACTGGAAAGTAACTGCAAGCAAGACTTGAGAGCTGAGCTATCTC  574

seq1  GGTATTTTTATCCAGTGTGTGGGGTGTTATACATGCATCACAGCTATAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTATCCAGTGTGTGGGGTGTTATACATGCATCACAGCTATAAT  624

seq1  AGAGCTATCACATGGGACATTCGAGAAAAAAGATAGAGGCGTTTGAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATCACATGGGACATTCGAGAAAAAAGATAGAGGCGTTTGAAAGG  674

seq1  TTCCTGGGCTTGATTTCTTAAAGGCTGTATTGCTTGGAGTTCAACAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTTGATTTCTTAAAGGCTGTATTGCTTGGAGTTCAACAAGAA  724

seq1  AGCCAGAGACTAGATATTAAAAGGTGAATTATTTTCAAAATTCAGTTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGACTAGATATTAAAAGGTGAATTATTTTCAAAATTCAGTTGTA  774

seq1  ACAGAAATAATTTACTTGAAATTATTTCAGGAAATGGAAGATAAAGTAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATAATTTACTTGAAATTATTTCAGGAAATGGAAGATAAAGTAAC  824

seq1  TAGTCCAGAGAAAGCTGAAGAAGCAAAGTTAAAGGCAAGGTATCCTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGAGAAAGCTGAAGAAGCAAAGTTAAAGGCAAGGTATCCTCACT  874

seq1  TGGGACAAAAGCCTGGAGGGTCTGATTTTTTAAGGAAAAGATTGCAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAAAAGCCTGGAGGGTCTGATTTTTTAAGGAAAAGATTGCAGAAA  924

seq1  GGGGTAAGTTGCTGAGTGCTATCTTCACATGTTTTCCCTGTGAGCTCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAGTTGCTGAGTGCTATCTTCACATGTTTTCCCTGTGAGCTCAGT  974

seq1  GTGCTGACAAGCTGAGTTGAATGTCTGTGTCTTTATTCCTGTATTTCCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACAAGCTGAGTTGAATGTCTGTGTCTTTATTCCTGTATTTCCAG  1024

seq1  GTGCATGTATCTCTGTCAATATTTCACATGGTTCATGTATGAAATGAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTATCTCTGTCAATATTTCACATGGTTCATGTATGAAATGAATA  1074

seq1  TGTATGAAAAGAAGCGATTACAATGTTTTAAATTAAACTGTAAAGTATTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAAAGAAGCGATTACAATGTTTTAAATTAAACTGTAAAGTATTT  1124

seq1  CAAGTATGTACCATAGTATGGGTGATAATGTCAAAGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGTACCATAGTATGGGTGATAATGTCAAAGAATTC  1165

seq1: chr9_74761689_74762843
seq2: B6Ng01-043A08.g_67_1197

seq1  GAATTCAGCCATCTGGGATGCTGGACAAGAGGACGGAACAACTGAGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCATCTGGGATGCTGGACAAGAGGACGGAACAACTGAGACCA  50

seq1  CTGGGTGAGGGGAAGCTGGAAGTGGGGCTACATGAAGCACAGTCTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAGGGGAAGCTGGAAGTGGGGCTACATGAAGCACAGTCTTTCAG  100

seq1  AGTGCAGTGGACACTGGTGGAAGATGGCCAGAGAGGCAAGAGAAGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTGGACACTGGTGGAAGATGGCCAGAGAGGCAAGAGAAGAAGGC  150

seq1  AGTGGAGATGACCTAGCATTGGGTCTTGTAGGTCCAGGGACCTCACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATGACCTAGCATTGGGTCTTGTAGGTCCAGGGACCTCACTTTC  200

seq1  CTTCCAGCTCATAAATAGTTTTTGAGGTGCTGGGTTGTAATCTGGGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCTCATAAATAGTTTTTGAGGTGCTGGGTTGTAATCTGGGATTC  250

seq1  ATGTGATAAGCGAACATTTTCCTACCAATCTACTTTTATTTTTAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAAGCGAACATTTTCCTACCAATCTACTTTTATTTTTAGTTTTT  300

seq1  TTTTTAAAGATTGATTGGTTTATTTTTATGTATATGAGTACACCGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGATTGATTGGTTTATTTTTATGTATATGAGTACACCGTGGCT  350

seq1  GCACTGATGGTTGTGGGCCATCATGTGGTTGCTGGGAATGAAGGTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGATGGTTGTGGGCCATCATGTGGTTGCTGGGAATGAAGGTTGCTT  400

seq1  GCTCCGGTCAGCCCCGCTCACTCCAGCCTAAAGATTTATTTATTATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGGTCAGCCCCGCTCACTCCAGCCTAAAGATTTATTTATTATTATA  450

seq1  TCTAAGCTGTCTTCAGACGCACCAGAAGAGGCCGTCAGATCTCATTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTGTCTTCAGACGCACCAGAAGAGGCCGTCAGATCTCATTATAG  500

seq1  ATGGTTGTGAACCATATGGTTGCTGGGATTTGAACTCGGGACCTTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAACCATATGGTTGCTGGGATTTGAACTCGGGACCTTTGGAA  550

seq1  GAGCAGTCAGGGCTCTTAACCACTGAACCATCTCTCCAGCCCCTCCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGGGCTCTTAACCACTGAACCATCTCTCCAGCCCCTCCTACC  600

seq1  AATCTACTATCTGGACCCCTAAATAATTTTTTAAAGTATTTGTTATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTATCTGGACCCCTAAATAATTTTTTAAAGTATTTGTTATTCCA  650

seq1  GAAAACAATATTTTTAAATTGTATTTTATTTTATGTACATTGGTGTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATATTTTTAAATTGTATTTTATTTTATGTACATTGGTGTGATG  700

seq1  GTGTTATATACCCTGGAGCTGGCATTACAGACAG-TTTTGAGCTGCCACA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTTATATACCCTGGAGCTGGCATTACAGACAGTTTTTGAGCTGCCACA  750

seq1  TGGTTGCTGGGAATTAAACCCAGGTCCTCTGGAAGAATAGCCAGTGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGAATTAAACCCAGGTCCTCTGGAAGAATAGCCAGTGCTTT  800

seq1  TAACCACTGAGCCATCTCTCCAGCCCCAGAAGTACGTATTCTTTTTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACCACTGAGCCATCTCTCCAGCCCCAGAAGTACGTATTC-TTTTTTTT  849

seq1  AAAAGCTTTTTTTTTTTTAAACTTATTCACTTACATCCTGCTCACTGCCC  899
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  AAAAGCTTTTTTTTTTTT-AACTTATTCACTTACATCCTGCTCACTG-CC  897

seq1  CCTCCCACTCATACCCTCCTACAGTCCTCCCCCCCCCCTCTGAGCAGGTG  949
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CCTCCCACTCATACCCTCCTACAGTCCT-CCCCCCCCCTCTGAGCA-GTG  945

seq1  AGGGCCACCCTAGGAAATCCACCCTGGCACCTCAAGTCTCTGTGAAGCTA  999
      |||||||||||||| |||||| ||||||||||| ||||||||||||||||
seq2  AGGGCCACCCTAGG-AATCCA-CCTGGCACCTC-AGTCTCTGTGAAGCTA  992

seq1  AGCACATCCTCTCCCACTGAGGCCAGACAAGGCAGCCCAGCTAGAAGAAC  1049
      |||||||||||| ||||||||||||||| |||||||||||||||||| ||
seq2  AGCACATCCTCT-CCACTGAGGCCAGAC-AGGCAGCCCAGCTAGAAG-AC  1039

seq1  CTATCCCACAGACACGCAACAGCTTTTGGGATAGCCTGCTCCAGTTGTTT  1099
      |||| |||||||| ||| || || |||||||||| ||||||  |    ||
seq2  CTAT-CCACAGAC-CGC-ACGGC-TTTGGGATAG-CTGCTCATG----TT  1080

seq1  GGGACCCACATGAAGACCAAGCTGCACACCTGCTACATATGTGTGGGGAG  1149
      ||||||  |||| ||| |||||||||||||||   |  ||||||||||  
seq2  GGGACC--CATG-AGAACAAGCTGCACACCTG--GCTCATGTGTGGGGGA  1125

seq1  GCCTAG  1155
      ||||||
seq2  GCCTAG  1131