BAC Information

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BAC

Clone NameB6Ng01-043F17
Chromosome9 (Build37)
Map Location 78,164,951 - 78,328,290
singlet/doubletdoublet
Overlap geneEG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a
Downstream geneSlc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043F17.bB6Ng01-043F17.g
ACCDH869446DH869447
length1,0771,078
definitionDH869446|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F17, 5' end.DH869447|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,164,951 - 78,165,995)(78,327,200 - 78,328,290)
sequence
gaattcctaggaagctatttgtctcagtttgtgttgaaatcccacaatta
ttaagttggtattaataacagtgaagggatgccacagcaacagagcaggt
gaacttgccaacatgagtgaggtaaagcaggcaaagaagcaaagtttcct
tcttcagtgtccttctgtccaggctgataccaacaggtgtcaccgacatc
tagggtgggccttccctcacagaatcttatcaagaaggggctggagagat
ggctttcctgttaagatcgagggatactttcacaaaggatgcagatttga
ttcccagcacccatgtcggctcacaatctgtgggtccagttccaagggat
ccgacaccctattctggcctttataggtaccagacacacacatgaaaggc
acacatatgaatgcagaacactcatacatgtacaagtaaatattaagaag
aaaagagaaagcccctgacagagtgcccagcagttgtgttttagttgacc
ccaggtgcagccaagctgacagccaagactaagcatggaggccacctgga
ggagggaggggctccctactcagggagctgaggaatttcacaaggctcct
cagtttctcaaggggtcttgggtttggtttgttcaaactgcagttgctgg
ggaggaggggtccatggtggctctgagtgccagtcagagtagagagctct
gcagatgcagttccccagcctgctggtgggtctttctagtagctgagacc
ctgcttaggagctgtcatgtcatgcttccattagaaactcccacaaacac
aaacatcagttcaacaactagttacagggatttatttatttttttattta
tttatttattttattttcgtcctcaatgcccaagctggggtgagagtcaa
gttgcaagcactttcataaaatttaaatatatgattactagctatgcatg
aactgtctccctccacgtccctgctgattttactggaatctttggctctt
ccaggatgaaagcatatggttctgctttcccttcaaggtatttgttttat
tttttaattagtaccaaatatggacgt
gaattctttaagcagggagtagaacctaggtcttgggtgtactaattaga
agtcactttgcagatgggaaagggctccttcaagtacgcctgggtcttag
acaaactgaaagctgagcgtgagcgtggtatcactattgacatctccctg
tggaaattcgagaccagcaaatactatgtgaccatcattgatgccccagg
acacagagacttcatcaaaaacatgattacaggcacatcccaggtgtgta
aaatttacccattcctgactcaggatattttttagtggggtgctttctct
gagataatggtatatgattgtcttgtttcttacaggctgactgtgctgtc
ctgattgttgctgctggtgttggtgaatttgaagctggtatctccaagaa
cgggcagacccgcgagcatgctcttctggcttacaccctgggtgtgaaac
agctgattgttggtgtcaacaaaatggattccaccgagccaccatacagt
cagaagagatacgaggaaatcgttaaggaagtcagcacctacattaagaa
aattggctacaaccctgacacagtagcatttgtgccaatttctggttgga
atggtgacaacatgctggagccaagtgctaatgtaagtgacttttaaggt
agttgaatggagaaagccgcaataagtaaggaggttataattgactgcct
gtgttttagatgccttggtttcaagggatggaaagtcacccgcaaagatg
gcagtgccagtggcaccacgctgctggaagctttggattgtatcctacca
ccaactcgtccaactgacaagcccctgcgactgcccctccaggatgtcta
taaaattggaggtaagtagatattaagtagaatgttgacgtgaatttgaa
gtcttatgttttgtgtataatactatacaacatactattttagcattgca
ctgtccctgtgggccggttgagactggtgtctccagcctggcatgtgtta
cctttgctctcagtcaatgttacaactgaagtcagtctgttgaaagcacc
atgagcttttgagtaaagctctttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78164951_78165995
seq2: B6Ng01-043F17.b_85_1121

seq1  CCCACAATTATTAAGTTGGTATTAATAACAGTGAAGGGATGCCACAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATTATTAAGTTGGTATTAATAACAGTGAAGGGATGCCACAGCAA  50

seq1  CAGAGCAGGTGAACTTGCCAACATGAGTGAGGTAAAGCAGGCAAAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGGTGAACTTGCCAACATGAGTGAGGTAAAGCAGGCAAAGAAGC  100

seq1  AAAGTTTCCTTCTTCAGTGTCCTTCTGTCCAGGCTGATACCAACAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCCTTCTTCAGTGTCCTTCTGTCCAGGCTGATACCAACAGGTGT  150

seq1  CACCGACATCTAGGGTGGGCCTTCCCTCACAGAATCTTATCAAGAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACATCTAGGGTGGGCCTTCCCTCACAGAATCTTATCAAGAAGGGG  200

seq1  CTGGAGAGATGGCTTTCCTGTTAAGATCGAGGGATACTTTCACAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGGCTTTCCTGTTAAGATCGAGGGATACTTTCACAAAGGAT  250

seq1  GCAGATTTGATTCCCAGCACCCATGTCGGCTCACAATCTGTGGGTCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTGATTCCCAGCACCCATGTCGGCTCACAATCTGTGGGTCCAGT  300

seq1  TCCAAGGGATCCGACACCCTATTCTGGCCTTTATAGGTACCAGACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGATCCGACACCCTATTCTGGCCTTTATAGGTACCAGACACACA  350

seq1  CATGAAAGGCACACATATGAATGCAGAACACTCATACATGTACAAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGCACACATATGAATGCAGAACACTCATACATGTACAAGTAAA  400

seq1  TATTAAGAAGAAAAGAGAAAGCCCCTGACAGAGTGCCCAGCAGTTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAAGAAAAGAGAAAGCCCCTGACAGAGTGCCCAGCAGTTGTGTT  450

seq1  TTAGTTGACCCCAGGTGCAGCCAAGCTGACAGCCAAGACTAAGCATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGACCCCAGGTGCAGCCAAGCTGACAGCCAAGACTAAGCATGGAG  500

seq1  GCCACCTGGAGGAGGGAGGGGCTCCCTACTCAGGGAGCTGAGGAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGGAGGAGGGAGGGGCTCCCTACTCAGGGAGCTGAGGAATTTCA  550

seq1  CAAGGCTCCTCAGTTTCTCAAGGGGTCTTGGGTTTGGTTTGTTCAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCCTCAGTTTCTCAAGGGGTCTTGGGTTTGGTTTGTTCAAACTG  600

seq1  CAGTTGCTGGGGAGGAGGGGTCCATGGTGGCTCTGAGTGCCAGTCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGGGGAGGAGGGGTCCATGGTGGCTCTGAGTGCCAGTCAGAGT  650

seq1  AGAGAGCTCTGCAGATGCAGTTCCCCAGCCTGCTGGTGGGTCTTTCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTCTGCAGATGCAGTTCCCCAGCCTGCTGGTGGGTCTTTCTAGT  700

seq1  AGCTGAGACCCTGCTTAGGAGCTGTCATGTCATGCTTCCATTAGAAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGACCCTGCTTAGGAGCTGTCATGTCATGCTTCCATTAGAAACTC  750

seq1  CCACAAACACAAACATCAGTTCAACAACTAGTTACAGGGATTTATTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACACAAACATCAGTTCAACAACTAGTTACAGGGATTTATTTATT  800

seq1  TATTTATTTATTTATTTA-TTTATTTTCGTCCTCAATGCCCAAGCTGGGG  849
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTATTTATTTATTTATTTTATTTTCGTCCTCAATGCCCAAGCTGGGG  850

seq1  TGAGAGTCAAGTGGCAAGCACATTTCATAAAAATTTAAATATATGATTAC  899
      |||||||||||| |||||||| |||||| |||||||||||||||||||||
seq2  TGAGAGTCAAGTTGCAAGCAC-TTTCAT-AAAATTTAAATATATGATTAC  898

seq1  TAGCTATGCATGAACTGTTCTCCCTCCACGTCCCTGCTGATTTTTACTGG  949
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TAGCTATGCATGAACTG-TCTCCCTCCACGTCCCTGCTGA-TTTTACTGG  946

seq1  AATACTTTGGCTCTTTCATGAATGAAAGCATATTGTTTTCTGCTTTCCCC  999
      ||| ||||||||||| || | |||||||||||| |  ||||||||| |||
seq2  AAT-CTTTGGCTCTTCCA-GGATGAAAGCATATGG--TTCTGCTTT-CCC  991

seq1  TTGCAAGTATTTGTTTATATTTTTAAATTAGTACCAAATAT-GACGT  1045
      ||  | |||||||||| ||||||| |||||||||||||||| |||||
seq2  TTCAAGGTATTTGTTT-TATTTTTTAATTAGTACCAAATATGGACGT  1037

seq1: chr9_78327200_78328290
seq2: B6Ng01-043F17.g_68_1145 (reverse)

seq1  CCAGGAAGAGCTTCACTCAAAGCTTCATGGTGCATTTCAACAGACTTGAC  50
      |||| |||||||| |||||||   ||||||||| ||||||||||| ||||
seq2  CCAGAAAGAGCTTTACTCAAAAGCTCATGGTGC-TTTCAACAGAC-TGAC  48

seq1  TTCAGTTGTTACATTGACTG-GAGCAAAGGTAACCACCATGCCAGGCTTG  99
      ||||||||| |||||||||| |||||||||||||   ||||||||||| |
seq2  TTCAGTTGTAACATTGACTGAGAGCAAAGGTAAC--ACATGCCAGGCTGG  96

seq1  AGAACACCAGTCTCCACTCGGCCCACAGGGACAGTGCCAATGCCTAAAAT  149
      || ||||||||||| || |||||||||||||||||| ||||| |||||||
seq2  AG-ACACCAGTCTCAAC-CGGCCCACAGGGACAGTG-CAATG-CTAAAAT  142

seq1  AGTATTGTTTTGTATAAGTATTTAATACACAAAACATAAGACTTCAAATT  199
      ||||   | |||||| ||||||  ||||||||||||||||||||||||||
seq2  AGTA---TGTTGTAT-AGTATT--ATACACAAAACATAAGACTTCAAATT  186

seq1  CACGTCAACATTCTACTTAATATTCTACTTACCTCCAATTTTATAGACAT  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACGTCAACATTCTACTTAATA-TCTACTTACCTCCAATTTTATAGACAT  235

seq1  CCTGGAGGGGCAGTCGCAGGGGCTTGTCAGTTGGACGAGTTGGTGGTAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGGGCAGTCGCAGGGGCTTGTCAGTTGGACGAGTTGGTGGTAGG  285

seq1  ATACAATCCAAAGCTTCCAGCAGCGTGGTGCCACTGGCACTGCCATCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCCAAAGCTTCCAGCAGCGTGGTGCCACTGGCACTGCCATCTTT  335

seq1  GCGGGTGACTTTCCATCCCTTG-AACCAAGGCATCTAAAACACAGGCAGT  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCGGGTGACTTTCCATCCCTTGAAACCAAGGCATCTAAAACACAGGCAGT  385

seq1  CAATTATAACCTCCTTACTTATTGCGGCTTTCTCCATTCAACTACCTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAACCTCCTTACTTATTGCGGCTTTCTCCATTCAACTACCTTAA  435

seq1  AAGTCACTTACATTAGCACTTGGCTCCAGCATGTTGTCACCATTCCAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTACATTAGCACTTGGCTCCAGCATGTTGTCACCATTCCAACC  485

seq1  AGAAATTGGCACAAATGCTACTGTGTCAGGGTTGTAGCCAATTTTCTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGGCACAAATGCTACTGTGTCAGGGTTGTAGCCAATTTTCTTAA  535

seq1  TGTAGGTGCTGACTTCCTTAACGATTTCCTCGTATCTCTTCTGACTGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGCTGACTTCCTTAACGATTTCCTCGTATCTCTTCTGACTGTAT  585

seq1  GGTGGCTCGGTGGAATCCATTTTGTTGACACCAACAATCAGCTGTTTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCGGTGGAATCCATTTTGTTGACACCAACAATCAGCTGTTTCAC  635

seq1  ACCCAGGGTGTAAGCCAGAAGAGCATGCTCGCGGGTCTGCCCGTTCTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGTGTAAGCCAGAAGAGCATGCTCGCGGGTCTGCCCGTTCTTGG  685

seq1  AGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCAGGACAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCAGGACAGCA  735

seq1  CAGTCAGCCTGTAAGAAACAAGACAATCATATACCATTATCTCAGAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCCTGTAAGAAACAAGACAATCATATACCATTATCTCAGAGAAA  785

seq1  GCACCCCACTAAAAAATATCCTGAGTCAGGAATGGGTAAATTTTACACAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCACTAAAAAATATCCTGAGTCAGGAATGGGTAAATTTTACACAC  835

seq1  CTGGGATGTGCCTGTAATCATGTTTTTGATGAAGTCTCTGTGTCCTGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTGCCTGTAATCATGTTTTTGATGAAGTCTCTGTGTCCTGGGG  885

seq1  CATCAATGATGGTCACATAGTATTTGCTGGTCTCGAATTTCCACAGGGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGATGGTCACATAGTATTTGCTGGTCTCGAATTTCCACAGGGAG  935

seq1  ATGTCAATAGTGATACCACGCTCACGCTCAGCTTTCAGTTTGTCTAAGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATAGTGATACCACGCTCACGCTCAGCTTTCAGTTTGTCTAAGAC  985

seq1  CCAGGCGTACTTGAAGGAGCCCTTTCCCATCTGCAAAGTGACTTCTAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGTACTTGAAGGAGCCCTTTCCCATCTGCAAAGTGACTTCTAATT  1035

seq1  AGTACACCCAAGACCTAGGTTCTACTCCCTGCTTAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACCCAAGACCTAGGTTCTACTCCCTGCTTAAAGAATTC  1078